2E8RA

Structural study of project id ph0725 from pyrococcus horikoshii ot3
Total Genus 87

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAMKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (12-15)TI3 (39-42)TVIII1 (27-30)S4 (79-84)AH4 (94-104)S2 (29-33)TIV2 (85-88)TIV3 (89-92)S5 (108-111)3H1 (120-123)AH9 (244-254)3H2 (127-129)S6 (130-136)S7 (161-166)AH6 (147-158)TII'1 (140-143)S8 (168-169)AH7 (178-192)3H3 (170-172)S9 (174-175)S12 (234-238)AH8 (221-225)TII1 (208-211)TIV4 (206-209)S11 (215-220)3H4 (258-261)S1 (2-7)AH1 (18-26)TIV1 (34-37)TI4 (87-90)AH5 (116-119)TI5 (198-201)TVIII2 (195-198)S10 (202-207)O1 (261-263)S3 (56-58)AH3 (60-76)AH2 (44-51)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3
rcsb
molecule keywords Probable diphthine synthase
total genus 87
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2e8rA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2e8rA01
1S4DA 2EK4A 2DSIA 2PCIA 2E4NA 2DV4A 2EK7A 2ENIA 2P6DA 2PB6A 2E16A 1WDEA 2PB4A 2EL2A 2DXXA 2P6KA 3NDCA 2EK3A 1WYZA 2DEKA 2P5CA 2DSGA 2EN5A 2HUXA 2PCMA 2EL0A 2PCGA 2ED3A 3NEIA 3FQ6A 2E17A 2E0NA 2DV5A 2P5FA 1VCEA 2HUVA 2EJJA 2EKAA 2EHLA 2HUQA 2E07A 2CBFA 2ELEA 2PB5A 2OWVA 2EL3A 2EH5A 2E8RA 2P9DA 2EL1A 2OWGA 2NPNA 2EHCA 2EGSA 2EGBA 2DXVA 1VA0A 3ND1A 2EH2A 2PCAA 1PJSA 2EH4A 2E8QA 2EMUA 2P2XA 2HUTA 2ED5A 2YBOA 2DXWA 2BB3A 2EJZA 5HW4A 1CBFA 2P6IA 2EGLA 3KWPA 2ZVCA 3FFYA 2E8SA 2DV3A 3I4TA 2PCHA 2E0KA 2OWKA 2E15A 1PJQA 1WNGA 2QBUA 2ELDA 1VHVA 2P6LA 2EK2A 1PJTA 2ZVBA 2HR8A 2EEQA 3NUTA 2YBQA 1V9AA 2EMRA 4E16A 2E8HA 2Z6RA 2PCKA 2EJKA 2E7RA 2OWUA 1VE2A 2DV7A 2OWFA 2DSHA 2E08A 3HH1A 2E4RA
chains in the Genus database with same CATH superfamily
3UV3A 1S4DA 3KELA 2EK4A 2DSIA 2PCIA 2E4NA 2DV4A 3ZGLA 3KEFA 2EK7A 2ENIA 2P6DA 2PB6A 2E16A 1WDEA 2PB4A 4MUXA 2EL2A 2DXXA 2P6KA 3NDCA 4H4CA 2EK3A 1WYZA 2DEKA 2P5CA 3SZOA 4H4EA 2DSGA 3SZUA 2EN5A 2HUXA 2PCMA 3UV7A 2EL0A 2PCGA 2ED3A 3NEIA 3TIXB 3FQ6A 3F7TA 4MV0A 2E17A 2E0NA 2DV5A 2P5FA 1VCEA 3UTDA 2HUVA 3KE9A 2EJJA 2EKAA 4EB3A 2EHLA 2HUQA 2E07A 2CBFA 2ELEA 2PB5A 2OWVA 2EL3A 2EH5A 3SZLA 2E8RA 2P9DA 2EL1A 2OWGA 2NPNA 2EHCA 2EGSA 2EGBA 2DXVA 1VA0A 3ND1A 2EH2A 2PCAA 3UTCA 1PJSA 2EH4A 2E8QA 2EMUA 2P2XA 2HUTA 2ED5A 2YBOA 2DXWA 2BB3A 2EJZA 5HW4A 1CBFA 2P6IA 2EGLA 3KWPA 2KYYA 2ZVCA 3FFYA 2E8SA 2DV3A 3I4TA 2PCHA 2E0KA 2OWKA 2E15A 3T0GA 1PJQA 3T0FA 4H4DA 3UWMA 1WNGA 2QBUA 2ELDA 3KE8A 1VHVA 3ZGNA 2P6LA 4MV5A 2EK2A 1PJTA 3DNFA 2ZVBA 2HR8A 4N7BA 2EEQA 3NUTA 2YBQA 1V9AA 3URKA 2EMRA 4E16A 2E8HA 2Z6RA 3LMMA 2PCKA 2EJKA 2E7RA 2OWUA 1VE2A 3UV6A 2DV7A 4MUYA 3KEMA 2OWFA 2DSHA 2E08A 3HH1A 2E4RA
chains in the Genus database with same CATH topology
3UV3A 1S4DA 3KELA 2EK4A 2DSIA 2PCIA 2E4NA 2DV4A 3ZGLA 3KEFA 2EK7A 2ENIA 2P6DA 2PB6A 2E16A 1WDEA 2PB4A 4MUXA 2EL2A 2DXXA 2P6KA 3NDCA 4H4CA 2EK3A 1WYZA 2DEKA 2P5CA 3SZOA 4H4EA 2DSGA 3SZUA 2EN5A 2HUXA 2PCMA 3UV7A 2EL0A 2PCGA 2ED3A 3NEIA 3TIXB 3FQ6A 3F7TA 4MV0A 2E17A 2E0NA 2DV5A 2P5FA 1VCEA 3UTDA 2HUVA 3KE9A 2EJJA 2EKAA 4EB3A 2EHLA 2HUQA 2E07A 2CBFA 2ELEA 2PB5A 2OWVA 2EL3A 2EH5A 3SZLA 2E8RA 2P9DA 2EL1A 2OWGA 2NPNA 2EHCA 2EGSA 2EGBA 2DXVA 1VA0A 3ND1A 2EH2A 2PCAA 3UTCA 1PJSA 2EH4A 2E8QA 2EMUA 2P2XA 2HUTA 2ED5A 2YBOA 2DXWA 2BB3A 2EJZA 5HW4A 1CBFA 2P6IA 2EGLA 3KWPA 2KYYA 2ZVCA 3FFYA 2E8SA 2DV3A 3I4TA 2PCHA 2E0KA 2OWKA 2E15A 3T0GA 1PJQA 3T0FA 4H4DA 3UWMA 1WNGA 2QBUA 2ELDA 3KE8A 1VHVA 3ZGNA 2P6LA 4MV5A 2EK2A 1PJTA 3DNFA 2ZVBA 2HR8A 4N7BA 2EEQA 3NUTA 2YBQA 1V9AA 3URKA 2EMRA 4E16A 2E8HA 2Z6RA 3LMMA 2PCKA 2EJKA 2E7RA 2OWUA 1VE2A 3UV6A 2DV7A 4MUYA 3KEMA 2OWFA 2DSHA 2E08A 3HH1A 2E4RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S4D A;  2EK4 A;  2DSI A;  2PCI A;  2E4N A;  2DV4 A;  2EK7 A;  2ENI A;  2P6D A;  2PB6 A;  2E16 A;  1WDE A;  2PB4 A;  2EL2 A;  2DXX A;  2P6K A;  3NDC A;  2EK3 A;  1WYZ A;  2DEK A;  2P5C A;  2DSG A;  2EN5 A;  2HUX A;  2PCM A;  2EL0 A;  2PCG A;  2ED3 A;  3NEI A;  3FQ6 A;  2E17 A;  2E0N A;  2DV5 A;  2P5F A;  1VCE A;  2HUV A;  2EJJ A;  2EKA A;  2EHL A;  2HUQ A;  2E07 A;  2CBF A;  2ELE A;  2PB5 A;  2OWV A;  2EL3 A;  2EH5 A;  2E8R A;  2P9D A;  2EL1 A;  2OWG A;  2NPN A;  2EHC A;  2EGS A;  2EGB A;  2DXV A;  1VA0 A;  3ND1 A;  2EH2 A;  2PCA A;  1PJS A;  2EH4 A;  2E8Q A;  2EMU A;  2P2X A;  2HUT A;  2ED5 A;  2YBO A;  2DXW A;  2BB3 A;  2EJZ A;  5HW4 A;  1CBF A;  2P6I A;  2EGL A;  3KWP A;  2ZVC A;  3FFY A;  2E8S A;  2DV3 A;  3I4T A;  2PCH A;  2E0K A;  2OWK A;  2E15 A;  1PJQ A;  1WNG A;  2QBU A;  2ELD A;  1VHV A;  2P6L A;  2EK2 A;  1PJT A;  2ZVB A;  2HR8 A;  2EEQ A;  3NUT A;  2YBQ A;  1V9A A;  2EMR A;  4E16 A;  2E8H A;  2Z6R A;  2PCK A;  2EJK A;  2E7R A;  2OWU A;  1VE2 A;  2DV7 A;  2OWF A;  2DSH A;  2E08 A;  3HH1 A;  2E4R A; 
#chains in the Genus database with same CATH topology
 3UV3 A;  1S4D A;  3KEL A;  2EK4 A;  2DSI A;  2PCI A;  2E4N A;  2DV4 A;  3ZGL A;  3KEF A;  2EK7 A;  2ENI A;  2P6D A;  2PB6 A;  2E16 A;  1WDE A;  2PB4 A;  4MUX A;  2EL2 A;  2DXX A;  2P6K A;  3NDC A;  4H4C A;  2EK3 A;  1WYZ A;  2DEK A;  2P5C A;  3SZO A;  4H4E A;  2DSG A;  3SZU A;  2EN5 A;  2HUX A;  2PCM A;  3UV7 A;  2EL0 A;  2PCG A;  2ED3 A;  3NEI A;  3TIX B;  3FQ6 A;  3F7T A;  4MV0 A;  2E17 A;  2E0N A;  2DV5 A;  2P5F A;  1VCE A;  3UTD A;  2HUV A;  3KE9 A;  2EJJ A;  2EKA A;  4EB3 A;  2EHL A;  2HUQ A;  2E07 A;  2CBF A;  2ELE A;  2PB5 A;  2OWV A;  2EL3 A;  2EH5 A;  3SZL A;  2E8R A;  2P9D A;  2EL1 A;  2OWG A;  2NPN A;  2EHC A;  2EGS A;  2EGB A;  2DXV A;  1VA0 A;  3ND1 A;  2EH2 A;  2PCA A;  3UTC A;  1PJS A;  2EH4 A;  2E8Q A;  2EMU A;  2P2X A;  2HUT A;  2ED5 A;  2YBO A;  2DXW A;  2BB3 A;  2EJZ A;  5HW4 A;  1CBF A;  2P6I A;  2EGL A;  3KWP A;  2KYY A;  2ZVC A;  3FFY A;  2E8S A;  2DV3 A;  3I4T A;  2PCH A;  2E0K A;  2OWK A;  2E15 A;  3T0G A;  1PJQ A;  3T0F A;  4H4D A;  3UWM A;  1WNG A;  2QBU A;  2ELD A;  3KE8 A;  1VHV A;  3ZGN A;  2P6L A;  4MV5 A;  2EK2 A;  1PJT A;  3DNF A;  2ZVB A;  2HR8 A;  4N7B A;  2EEQ A;  3NUT A;  2YBQ A;  1V9A A;  3URK A;  2EMR A;  4E16 A;  2E8H A;  2Z6R A;  3LMM A;  2PCK A;  2EJK A;  2E7R A;  2OWU A;  1VE2 A;  3UV6 A;  2DV7 A;  4MUY A;  3KEM A;  2OWF A;  2DSH A;  2E08 A;  3HH1 A;  2E4R A; 
#chains in the Genus database with same CATH homology
 3UV3 A;  1S4D A;  3KEL A;  2EK4 A;  2DSI A;  2PCI A;  2E4N A;  2DV4 A;  3ZGL A;  3KEF A;  2EK7 A;  2ENI A;  2P6D A;  2PB6 A;  2E16 A;  1WDE A;  2PB4 A;  4MUX A;  2EL2 A;  2DXX A;  2P6K A;  3NDC A;  4H4C A;  2EK3 A;  1WYZ A;  2DEK A;  2P5C A;  3SZO A;  4H4E A;  2DSG A;  3SZU A;  2EN5 A;  2HUX A;  2PCM A;  3UV7 A;  2EL0 A;  2PCG A;  2ED3 A;  3NEI A;  3TIX B;  3FQ6 A;  3F7T A;  4MV0 A;  2E17 A;  2E0N A;  2DV5 A;  2P5F A;  1VCE A;  3UTD A;  2HUV A;  3KE9 A;  2EJJ A;  2EKA A;  4EB3 A;  2EHL A;  2HUQ A;  2E07 A;  2CBF A;  2ELE A;  2PB5 A;  2OWV A;  2EL3 A;  2EH5 A;  3SZL A;  2E8R A;  2P9D A;  2EL1 A;  2OWG A;  2NPN A;  2EHC A;  2EGS A;  2EGB A;  2DXV A;  1VA0 A;  3ND1 A;  2EH2 A;  2PCA A;  3UTC A;  1PJS A;  2EH4 A;  2E8Q A;  2EMU A;  2P2X A;  2HUT A;  2ED5 A;  2YBO A;  2DXW A;  2BB3 A;  2EJZ A;  5HW4 A;  1CBF A;  2P6I A;  2EGL A;  3KWP A;  2KYY A;  2ZVC A;  3FFY A;  2E8S A;  2DV3 A;  3I4T A;  2PCH A;  2E0K A;  2OWK A;  2E15 A;  3T0G A;  1PJQ A;  3T0F A;  4H4D A;  3UWM A;  1WNG A;  2QBU A;  2ELD A;  3KE8 A;  1VHV A;  3ZGN A;  2P6L A;  4MV5 A;  2EK2 A;  1PJT A;  3DNF A;  2ZVB A;  2HR8 A;  4N7B A;  2EEQ A;  3NUT A;  2YBQ A;  1V9A A;  3URK A;  2EMR A;  4E16 A;  2E8H A;  2Z6R A;  3LMM A;  2PCK A;  2EJK A;  2E7R A;  2OWU A;  1VE2 A;  3UV6 A;  2DV7 A;  4MUY A;  3KEM A;  2OWF A;  2DSH A;  2E08 A;  3HH1 A;  2E4R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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