2EEQ | Genus

Total Genus 83

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	83
sequence length	265
structure length	265
Chain Sequence	MVLYFIGLGLYDERDITVKGLEIAKKCDMVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Pyrococcus horikoshii
publication title	Mutant Y29M structure of PH0725 from Pyrococcus horikoshii OT3 rcsb
molecule keywords	diphthine synthase
total genus	83
structure length	265
sequence length	265
chains with identical sequence	B
ec nomenclature	ec 2.1.1.98: Diphthine synthase.
pdb deposition date	2007-02-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00590	TP_methylase	Tetrapyrrole (Corrin/Porphyrin) Methylases

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.950.10	Alpha Beta	2-Layer Sandwich	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	2eeqA02
3.40.1010.10	Alpha Beta	3-Layer(aba) Sandwich	Cobalt-precorrin-4 Transmethylase; domain 1	Cobalt-precorrin-4 Transmethylase; Domain 1	2eeqA01

2PCMA 2EMRA 1VHVA 2E16A 2E08A 2P5CA 2PCHA 2DEKA 1VE2A 2E0NA 3NEIA 2DSHA 2E8QA 2EJZA 2PCKA 3FFYA 2DXWA 2EHCA 1WDEA 2E0KA 2EH2A 2E7RA 2ZVCA 2PB4A 2DSGA 2DXXA 2HUQA 2PCAA 2ED3A 2EK3A 2EGLA 1PJTA 2P6DA 2EK2A 2BB3A 2EH4A 1VCEA 2Z6RA 1S4DA 2EL1A 2OWGA 2E4NA 2EL0A 2P6KA 2CBFA 1CBFA 2EL2A 2P6IA 2HUVA 2PCIA 2EN5A 2E8RA 2P2XA 2E07A 5HW4A 2PCGA 2DV7A 2DV4A 2DSIA 2NPNA 2ED5A 3NDCA 2DXVA 2OWFA 2ENIA 2EGBA 2EGSA 2OWVA 2E8HA 2EK4A 2ELDA 3NUTA 2E17A 2OWUA 1WNGA 2DV5A 2P5FA 2DV3A 2EH5A 2YBOA 1VA0A 4E16A 2EHLA 2E8SA 2YBQA 2OWKA 2P9DA 2QBUA 1PJQA 3KWPA 2EEQA 3HH1A 3FQ6A 2EK7A 2ELEA 1V9AA 2EJKA 2PB6A 2EL3A 2E4RA 2ZVBA 2HUXA 1WYZA 1PJSA 2EJJA 3I4TA 2E15A 2HUTA 2PB5A 2EKAA 2EMUA 2P6LA 2HR8A 3ND1A
chains in the Genus database with same CATH superfamily

2PCMA 2EMRA 1VHVA 2E16A 2E08A 2P5CA 2PCHA 2DEKA 4H4DA 1VE2A 2E0NA 3NEIA 2DSHA 3KEMA 2E8QA 2EJZA 2PCKA 3FFYA 2DXWA 2EHCA 1WDEA 2E0KA 4MV0A 2EH2A 3LMMA 2E7RA 2ZVCA 2PB4A 2DSGA 2DXXA 2HUQA 2PCAA 2ED3A 2EK3A 2EGLA 3UTDA 2KYYA 1PJTA 2P6DA 2EK2A 3KELA 2BB3A 2EH4A 1VCEA 2Z6RA 1S4DA 2EL1A 2OWGA 3F7TA 2E4NA 2EL0A 2P6KA 2CBFA 1CBFA 2EL2A 2P6IA 3SZLA 2HUVA 3SZUA 2PCIA 2EN5A 2E8RA 2P2XA 4N7BA 2E07A 3KEFA 5HW4A 4MV5A 2PCGA 2DV7A 3UTCA 2DV4A 2DSIA 2NPNA 2ED5A 4MUYA 3NDCA 3T0FA 2DXVA 3TIXB 2OWFA 2ENIA 2EGBA 2EGSA 3T0GA 2OWVA 3DNFA 2E8HA 2EK4A 3UV6A 2ELDA 3NUTA 3UWMA 2E17A 2OWUA 1WNGA 2DV5A 2P5FA 4MUXA 2DV3A 2EH5A 2YBOA 1VA0A 4E16A 2EHLA 3ZGLA 2E8SA 2YBQA 3KE9A 2OWKA 2P9DA 2QBUA 1PJQA 3KWPA 2EEQA 3HH1A 3SZOA 3KE8A 3FQ6A 2EK7A 2ELEA 1V9AA 3ZGNA 2EJKA 4H4EA 2PB6A 2EL3A 2E4RA 2ZVBA 4H4CA 2HUXA 1WYZA 3URKA 1PJSA 2EJJA 3I4TA 2E15A 2HUTA 2PB5A 2EKAA 4EB3A 2EMUA 2P6LA 3UV3A 3UV7A 2HR8A 3ND1A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2PCM A;  2EMR A;  1VHV A;  2E16 A;  2E08 A;  2P5C A;  2PCH A;  2DEK A;  1VE2 A;  2E0N A;  3NEI A;  2DSH A;  2E8Q A;  2EJZ A;  2PCK A;  3FFY A;  2DXW A;  2EHC A;  1WDE A;  2E0K A;  2EH2 A;  2E7R A;  2ZVC A;  2PB4 A;  2DSG A;  2DXX A;  2HUQ A;  2PCA A;  2ED3 A;  2EK3 A;  2EGL A;  1PJT A;  2P6D A;  2EK2 A;  2BB3 A;  2EH4 A;  1VCE A;  2Z6R A;  1S4D A;  2EL1 A;  2OWG A;  2E4N A;  2EL0 A;  2P6K A;  2CBF A;  1CBF A;  2EL2 A;  2P6I A;  2HUV A;  2PCI A;  2EN5 A;  2E8R A;  2P2X A;  2E07 A;  5HW4 A;  2PCG A;  2DV7 A;  2DV4 A;  2DSI A;  2NPN A;  2ED5 A;  3NDC A;  2DXV A;  2OWF A;  2ENI A;  2EGB A;  2EGS A;  2OWV A;  2E8H A;  2EK4 A;  2ELD A;  3NUT A;  2E17 A;  2OWU A;  1WNG A;  2DV5 A;  2P5F A;  2DV3 A;  2EH5 A;  2YBO A;  1VA0 A;  4E16 A;  2EHL A;  2E8S A;  2YBQ A;  2OWK A;  2P9D A;  2QBU A;  1PJQ A;  3KWP A;  2EEQ A;  3HH1 A;  3FQ6 A;  2EK7 A;  2ELE A;  1V9A A;  2EJK A;  2PB6 A;  2EL3 A;  2E4R A;  2ZVB A;  2HUX A;  1WYZ A;  1PJS A;  2EJJ A;  3I4T A;  2E15 A;  2HUT A;  2PB5 A;  2EKA A;  2EMU A;  2P6L A;  2HR8 A;  3ND1 A; 
#chains in the Genus database with same CATH topology
 2PCM A;  2EMR A;  1VHV A;  2E16 A;  2E08 A;  2P5C A;  2PCH A;  2DEK A;  4H4D A;  1VE2 A;  2E0N A;  3NEI A;  2DSH A;  3KEM A;  2E8Q A;  2EJZ A;  2PCK A;  3FFY A;  2DXW A;  2EHC A;  1WDE A;  2E0K A;  4MV0 A;  2EH2 A;  3LMM A;  2E7R A;  2ZVC A;  2PB4 A;  2DSG A;  2DXX A;  2HUQ A;  2PCA A;  2ED3 A;  2EK3 A;  2EGL A;  3UTD A;  2KYY A;  1PJT A;  2P6D A;  2EK2 A;  3KEL A;  2BB3 A;  2EH4 A;  1VCE A;  2Z6R A;  1S4D A;  2EL1 A;  2OWG A;  3F7T A;  2E4N A;  2EL0 A;  2P6K A;  2CBF A;  1CBF A;  2EL2 A;  2P6I A;  3SZL A;  2HUV A;  3SZU A;  2PCI A;  2EN5 A;  2E8R A;  2P2X A;  4N7B A;  2E07 A;  3KEF A;  5HW4 A;  4MV5 A;  2PCG A;  2DV7 A;  3UTC A;  2DV4 A;  2DSI A;  2NPN A;  2ED5 A;  4MUY A;  3NDC A;  3T0F A;  2DXV A;  3TIX B;  2OWF A;  2ENI A;  2EGB A;  2EGS A;  3T0G A;  2OWV A;  3DNF A;  2E8H A;  2EK4 A;  3UV6 A;  2ELD A;  3NUT A;  3UWM A;  2E17 A;  2OWU A;  1WNG A;  2DV5 A;  2P5F A;  4MUX A;  2DV3 A;  2EH5 A;  2YBO A;  1VA0 A;  4E16 A;  2EHL A;  3ZGL A;  2E8S A;  2YBQ A;  3KE9 A;  2OWK A;  2P9D A;  2QBU A;  1PJQ A;  3KWP A;  2EEQ A;  3HH1 A;  3SZO A;  3KE8 A;  3FQ6 A;  2EK7 A;  2ELE A;  1V9A A;  3ZGN A;  2EJK A;  4H4E A;  2PB6 A;  2EL3 A;  2E4R A;  2ZVB A;  4H4C A;  2HUX A;  1WYZ A;  3URK A;  1PJS A;  2EJJ A;  3I4T A;  2E15 A;  2HUT A;  2PB5 A;  2EKA A;  4EB3 A;  2EMU A;  2P6L A;  3UV3 A;  3UV7 A;  2HR8 A;  3ND1 A; 
#chains in the Genus database with same CATH homology
 2PCM A;  2EMR A;  1VHV A;  2E16 A;  2E08 A;  2P5C A;  2PCH A;  2DEK A;  4H4D A;  1VE2 A;  2E0N A;  3NEI A;  2DSH A;  3KEM A;  2E8Q A;  2EJZ A;  2PCK A;  3FFY A;  2DXW A;  2EHC A;  1WDE A;  2E0K A;  4MV0 A;  2EH2 A;  3LMM A;  2E7R A;  2ZVC A;  2PB4 A;  2DSG A;  2DXX A;  2HUQ A;  2PCA A;  2ED3 A;  2EK3 A;  2EGL A;  3UTD A;  2KYY A;  1PJT A;  2P6D A;  2EK2 A;  3KEL A;  2BB3 A;  2EH4 A;  1VCE A;  2Z6R A;  1S4D A;  2EL1 A;  2OWG A;  3F7T A;  2E4N A;  2EL0 A;  2P6K A;  2CBF A;  1CBF A;  2EL2 A;  2P6I A;  3SZL A;  2HUV A;  3SZU A;  2PCI A;  2EN5 A;  2E8R A;  2P2X A;  4N7B A;  2E07 A;  3KEF A;  5HW4 A;  4MV5 A;  2PCG A;  2DV7 A;  3UTC A;  2DV4 A;  2DSI A;  2NPN A;  2ED5 A;  4MUY A;  3NDC A;  3T0F A;  2DXV A;  3TIX B;  2OWF A;  2ENI A;  2EGB A;  2EGS A;  3T0G A;  2OWV A;  3DNF A;  2E8H A;  2EK4 A;  3UV6 A;  2ELD A;  3NUT A;  3UWM A;  2E17 A;  2OWU A;  1WNG A;  2DV5 A;  2P5F A;  4MUX A;  2DV3 A;  2EH5 A;  2YBO A;  1VA0 A;  4E16 A;  2EHL A;  3ZGL A;  2E8S A;  2YBQ A;  3KE9 A;  2OWK A;  2P9D A;  2QBU A;  1PJQ A;  3KWP A;  2EEQ A;  3HH1 A;  3SZO A;  3KE8 A;  3FQ6 A;  2EK7 A;  2ELE A;  1V9A A;  3ZGN A;  2EJK A;  4H4E A;  2PB6 A;  2EL3 A;  2E4R A;  2ZVB A;  4H4C A;  2HUX A;  1WYZ A;  3URK A;  1PJS A;  2EJJ A;  3I4T A;  2E15 A;  2HUT A;  2PB5 A;  2EKA A;  4EB3 A;  2EMU A;  2P6L A;  3UV3 A;  3UV7 A;  2HR8 A;  3ND1 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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2EEQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations