2EHCA

Crystal structure of asn69 to lys mutant of diphthine synthase
Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFEKIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (79-84)TI1 (12-15)TI3 (39-42)TVIII1 (27-30)AH4 (94-104)S2 (29-33)TIV2 (85-88)TIV3 (89-92)S5 (107-111)3H1 (120-123)AH9 (244-254)3H2 (127-129)S6 (130-136)S7 (161-166)AH6 (147-158)TII'1 (140-143)AH7 (178-192)S8 (168-169)S9 (174-175)3H3 (170-172)S12 (234-238)AH8 (221-225)TII1 (208-211)TIV4 (206-209)S11 (215-220)3H4 (258-261)AH1 (18-26)TIV1 (34-37)TI4 (87-90)TI5 (198-201)TVIII2 (195-198)S10 (202-207)S3 (56-58)AH3 (60-76)AH5 (116-119)AH2 (44-51)S1 (2-7)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3
rcsb
molecule keywords diphthine synthase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ehcA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ehcA01
2EL2A 2HUQA 3ND1A 2EMUA 2YBQA 2E8HA 2PB5A 3FFYA 2E08A 2EHCA 2PCKA 2E17A 1PJQA 2EL0A 2EJZA 3FQ6A 1PJTA 2EH5A 3NEIA 2Z6RA 1VA0A 2NPNA 2E7RA 1CBFA 2BB3A 2E15A 2ZVCA 2OWVA 2EK7A 2ENIA 2HUXA 2DEKA 1WDEA 2OWKA 2EJJA 5HW4A 2EL1A 2ELEA 2OWUA 1S4DA 2P2XA 2CBFA 2HR8A 2DV7A 2PCMA 2DV4A 2P6DA 2EHLA 2OWFA 3NUTA 1V9AA 2EKAA 2P6IA 2P6KA 2ED5A 2PCAA 1VE2A 2DSIA 2E4RA 2EN5A 2DV3A 2DXXA 2E16A 2PCGA 2P5CA 2YBOA 2E8RA 2DSGA 2ED3A 2EGBA 2EGSA 2PCHA 2ELDA 2PB6A 2PCIA 2P9DA 1VCEA 2EMRA 2EH4A 2HUTA 2EEQA 2OWGA 2P5FA 2DXVA 2DSHA 2E0NA 2E8QA 1WYZA 2EK4A 2P6LA 3NDCA 2EJKA 2E07A 2DXWA 2EL3A 2EGLA 2E8SA 2DV5A 2EK2A 2E0KA 1WNGA 2E4NA 4E16A 2EH2A 1PJSA 2QBUA 2HUVA 3HH1A 2PB4A 2EK3A 2ZVBA 3KWPA 1VHVA 3I4TA
chains in the Genus database with same CATH superfamily
3KELA 2EL2A 2HUQA 3ND1A 2EMUA 3DNFA 2YBQA 3UV6A 2E8HA 2PB5A 3FFYA 2E08A 2EHCA 3ZGLA 4N7BA 2PCKA 2E17A 1PJQA 2EL0A 4H4CA 3KE8A 2EJZA 3FQ6A 3KEMA 1PJTA 3SZUA 2EH5A 3NEIA 2Z6RA 1VA0A 2NPNA 2E7RA 1CBFA 2BB3A 2E15A 4MUYA 3UWMA 2ZVCA 2OWVA 3SZLA 2EK7A 3KE9A 2ENIA 3LMMA 3F7TA 2HUXA 2DEKA 1WDEA 2OWKA 2EJJA 3UTDA 3KEFA 5HW4A 2EL1A 2ELEA 2OWUA 1S4DA 2P2XA 2CBFA 3UV3A 2HR8A 2DV7A 2PCMA 4H4DA 4MUXA 2DV4A 2P6DA 2EHLA 3T0GA 2OWFA 3NUTA 1V9AA 2EKAA 2P6IA 2P6KA 2ED5A 2PCAA 1VE2A 2DSIA 2E4RA 3UTCA 2EN5A 2DV3A 2KYYA 2DXXA 2E16A 2PCGA 2P5CA 2YBOA 2E8RA 2DSGA 2ED3A 2EGBA 3URKA 2EGSA 4EB3A 2PCHA 2ELDA 2PB6A 3UV7A 2PCIA 4MV0A 3T0FA 2P9DA 1VCEA 2EMRA 3ZGNA 2EH4A 2HUTA 2EEQA 2OWGA 2P5FA 2DXVA 2DSHA 2E0NA 2E8QA 1WYZA 4MV5A 2EK4A 2P6LA 3NDCA 2EJKA 2E07A 2DXWA 2EL3A 2EGLA 3TIXB 2E8SA 2DV5A 2EK2A 2E0KA 1WNGA 2E4NA 4E16A 2EH2A 1PJSA 2QBUA 4H4EA 2HUVA 3HH1A 2PB4A 2EK3A 2ZVBA 3KWPA 1VHVA 3SZOA 3I4TA
chains in the Genus database with same CATH topology
3KELA 2EL2A 2HUQA 3ND1A 2EMUA 3DNFA 2YBQA 3UV6A 2E8HA 2PB5A 3FFYA 2E08A 2EHCA 3ZGLA 4N7BA 2PCKA 2E17A 1PJQA 2EL0A 4H4CA 3KE8A 2EJZA 3FQ6A 3KEMA 1PJTA 3SZUA 2EH5A 3NEIA 2Z6RA 1VA0A 2NPNA 2E7RA 1CBFA 2BB3A 2E15A 4MUYA 3UWMA 2ZVCA 2OWVA 3SZLA 2EK7A 3KE9A 2ENIA 3LMMA 3F7TA 2HUXA 2DEKA 1WDEA 2OWKA 2EJJA 3UTDA 3KEFA 5HW4A 2EL1A 2ELEA 2OWUA 1S4DA 2P2XA 2CBFA 3UV3A 2HR8A 2DV7A 2PCMA 4H4DA 4MUXA 2DV4A 2P6DA 2EHLA 3T0GA 2OWFA 3NUTA 1V9AA 2EKAA 2P6IA 2P6KA 2ED5A 2PCAA 1VE2A 2DSIA 2E4RA 3UTCA 2EN5A 2DV3A 2KYYA 2DXXA 2E16A 2PCGA 2P5CA 2YBOA 2E8RA 2DSGA 2ED3A 2EGBA 3URKA 2EGSA 4EB3A 2PCHA 2ELDA 2PB6A 3UV7A 2PCIA 4MV0A 3T0FA 2P9DA 1VCEA 2EMRA 3ZGNA 2EH4A 2HUTA 2EEQA 2OWGA 2P5FA 2DXVA 2DSHA 2E0NA 2E8QA 1WYZA 4MV5A 2EK4A 2P6LA 3NDCA 2EJKA 2E07A 2DXWA 2EL3A 2EGLA 3TIXB 2E8SA 2DV5A 2EK2A 2E0KA 1WNGA 2E4NA 4E16A 2EH2A 1PJSA 2QBUA 4H4EA 2HUVA 3HH1A 2PB4A 2EK3A 2ZVBA 3KWPA 1VHVA 3SZOA 3I4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EL2 A;  2HUQ A;  3ND1 A;  2EMU A;  2YBQ A;  2E8H A;  2PB5 A;  3FFY A;  2E08 A;  2EHC A;  2PCK A;  2E17 A;  1PJQ A;  2EL0 A;  2EJZ A;  3FQ6 A;  1PJT A;  2EH5 A;  3NEI A;  2Z6R A;  1VA0 A;  2NPN A;  2E7R A;  1CBF A;  2BB3 A;  2E15 A;  2ZVC A;  2OWV A;  2EK7 A;  2ENI A;  2HUX A;  2DEK A;  1WDE A;  2OWK A;  2EJJ A;  5HW4 A;  2EL1 A;  2ELE A;  2OWU A;  1S4D A;  2P2X A;  2CBF A;  2HR8 A;  2DV7 A;  2PCM A;  2DV4 A;  2P6D A;  2EHL A;  2OWF A;  3NUT A;  1V9A A;  2EKA A;  2P6I A;  2P6K A;  2ED5 A;  2PCA A;  1VE2 A;  2DSI A;  2E4R A;  2EN5 A;  2DV3 A;  2DXX A;  2E16 A;  2PCG A;  2P5C A;  2YBO A;  2E8R A;  2DSG A;  2ED3 A;  2EGB A;  2EGS A;  2PCH A;  2ELD A;  2PB6 A;  2PCI A;  2P9D A;  1VCE A;  2EMR A;  2EH4 A;  2HUT A;  2EEQ A;  2OWG A;  2P5F A;  2DXV A;  2DSH A;  2E0N A;  2E8Q A;  1WYZ A;  2EK4 A;  2P6L A;  3NDC A;  2EJK A;  2E07 A;  2DXW A;  2EL3 A;  2EGL A;  2E8S A;  2DV5 A;  2EK2 A;  2E0K A;  1WNG A;  2E4N A;  4E16 A;  2EH2 A;  1PJS A;  2QBU A;  2HUV A;  3HH1 A;  2PB4 A;  2EK3 A;  2ZVB A;  3KWP A;  1VHV A;  3I4T A; 
#chains in the Genus database with same CATH topology
 3KEL A;  2EL2 A;  2HUQ A;  3ND1 A;  2EMU A;  3DNF A;  2YBQ A;  3UV6 A;  2E8H A;  2PB5 A;  3FFY A;  2E08 A;  2EHC A;  3ZGL A;  4N7B A;  2PCK A;  2E17 A;  1PJQ A;  2EL0 A;  4H4C A;  3KE8 A;  2EJZ A;  3FQ6 A;  3KEM A;  1PJT A;  3SZU A;  2EH5 A;  3NEI A;  2Z6R A;  1VA0 A;  2NPN A;  2E7R A;  1CBF A;  2BB3 A;  2E15 A;  4MUY A;  3UWM A;  2ZVC A;  2OWV A;  3SZL A;  2EK7 A;  3KE9 A;  2ENI A;  3LMM A;  3F7T A;  2HUX A;  2DEK A;  1WDE A;  2OWK A;  2EJJ A;  3UTD A;  3KEF A;  5HW4 A;  2EL1 A;  2ELE A;  2OWU A;  1S4D A;  2P2X A;  2CBF A;  3UV3 A;  2HR8 A;  2DV7 A;  2PCM A;  4H4D A;  4MUX A;  2DV4 A;  2P6D A;  2EHL A;  3T0G A;  2OWF A;  3NUT A;  1V9A A;  2EKA A;  2P6I A;  2P6K A;  2ED5 A;  2PCA A;  1VE2 A;  2DSI A;  2E4R A;  3UTC A;  2EN5 A;  2DV3 A;  2KYY A;  2DXX A;  2E16 A;  2PCG A;  2P5C A;  2YBO A;  2E8R A;  2DSG A;  2ED3 A;  2EGB A;  3URK A;  2EGS A;  4EB3 A;  2PCH A;  2ELD A;  2PB6 A;  3UV7 A;  2PCI A;  4MV0 A;  3T0F A;  2P9D A;  1VCE A;  2EMR A;  3ZGN A;  2EH4 A;  2HUT A;  2EEQ A;  2OWG A;  2P5F A;  2DXV A;  2DSH A;  2E0N A;  2E8Q A;  1WYZ A;  4MV5 A;  2EK4 A;  2P6L A;  3NDC A;  2EJK A;  2E07 A;  2DXW A;  2EL3 A;  2EGL A;  3TIX B;  2E8S A;  2DV5 A;  2EK2 A;  2E0K A;  1WNG A;  2E4N A;  4E16 A;  2EH2 A;  1PJS A;  2QBU A;  4H4E A;  2HUV A;  3HH1 A;  2PB4 A;  2EK3 A;  2ZVB A;  3KWP A;  1VHV A;  3SZO A;  3I4T A; 
#chains in the Genus database with same CATH homology
 3KEL A;  2EL2 A;  2HUQ A;  3ND1 A;  2EMU A;  3DNF A;  2YBQ A;  3UV6 A;  2E8H A;  2PB5 A;  3FFY A;  2E08 A;  2EHC A;  3ZGL A;  4N7B A;  2PCK A;  2E17 A;  1PJQ A;  2EL0 A;  4H4C A;  3KE8 A;  2EJZ A;  3FQ6 A;  3KEM A;  1PJT A;  3SZU A;  2EH5 A;  3NEI A;  2Z6R A;  1VA0 A;  2NPN A;  2E7R A;  1CBF A;  2BB3 A;  2E15 A;  4MUY A;  3UWM A;  2ZVC A;  2OWV A;  3SZL A;  2EK7 A;  3KE9 A;  2ENI A;  3LMM A;  3F7T A;  2HUX A;  2DEK A;  1WDE A;  2OWK A;  2EJJ A;  3UTD A;  3KEF A;  5HW4 A;  2EL1 A;  2ELE A;  2OWU A;  1S4D A;  2P2X A;  2CBF A;  3UV3 A;  2HR8 A;  2DV7 A;  2PCM A;  4H4D A;  4MUX A;  2DV4 A;  2P6D A;  2EHL A;  3T0G A;  2OWF A;  3NUT A;  1V9A A;  2EKA A;  2P6I A;  2P6K A;  2ED5 A;  2PCA A;  1VE2 A;  2DSI A;  2E4R A;  3UTC A;  2EN5 A;  2DV3 A;  2KYY A;  2DXX A;  2E16 A;  2PCG A;  2P5C A;  2YBO A;  2E8R A;  2DSG A;  2ED3 A;  2EGB A;  3URK A;  2EGS A;  4EB3 A;  2PCH A;  2ELD A;  2PB6 A;  3UV7 A;  2PCI A;  4MV0 A;  3T0F A;  2P9D A;  1VCE A;  2EMR A;  3ZGN A;  2EH4 A;  2HUT A;  2EEQ A;  2OWG A;  2P5F A;  2DXV A;  2DSH A;  2E0N A;  2E8Q A;  1WYZ A;  4MV5 A;  2EK4 A;  2P6L A;  3NDC A;  2EJK A;  2E07 A;  2DXW A;  2EL3 A;  2EGL A;  3TIX B;  2E8S A;  2DV5 A;  2EK2 A;  2E0K A;  1WNG A;  2E4N A;  4E16 A;  2EH2 A;  1PJS A;  2QBU A;  4H4E A;  2HUV A;  3HH1 A;  2PB4 A;  2EK3 A;  2ZVB A;  3KWP A;  1VHV A;  3SZO A;  3I4T A; 
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