2EJK | Genus

Total Genus 83

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	83
sequence length	265
structure length	265
Chain Sequence	MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSMMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Pyrococcus horikoshii
publication title	Mutant L38M structure of PH0725 from Pyrococcus horikoshii OT3 rcsb
molecule keywords	diphthine synthase
total genus	83
structure length	265
sequence length	265
chains with identical sequence	B
ec nomenclature	ec 2.1.1.98: Diphthine synthase.
pdb deposition date	2007-03-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00590	TP_methylase	Tetrapyrrole (Corrin/Porphyrin) Methylases

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.950.10	Alpha Beta	2-Layer Sandwich	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	2ejkA02
3.40.1010.10	Alpha Beta	3-Layer(aba) Sandwich	Cobalt-precorrin-4 Transmethylase; domain 1	Cobalt-precorrin-4 Transmethylase; Domain 1	2ejkA01

2EL1A 2PCHA 2DV7A 2DV4A 2HUTA 2PCAA 2OWUA 1PJSA 4E16A 2OWVA 1PJTA 2EH4A 2EL0A 2DV3A 1S4DA 2P9DA 2P6IA 2PB4A 2DSIA 3I4TA 1WDEA 2EHLA 3NEIA 2E4NA 2EK4A 2PCKA 2E8QA 2EJZA 2PCIA 2P2XA 2E0NA 2NPNA 2E0KA 1VCEA 3NDCA 2EN5A 2YBOA 3NUTA 2CBFA 2PB6A 2E07A 2EL2A 2ZVCA 2EK3A 2OWGA 2EJJA 2DSHA 2DV5A 2PCGA 2P6LA 1VE2A 2DSGA 2P5FA 2EH5A 2ELEA 2P6KA 2HR8A 1VA0A 1WNGA 2E15A 2Z6RA 2OWFA 2EJKA 2E4RA 2EHCA 2ZVBA 2E08A 2EL3A 2EMUA 1WYZA 2EGLA 5HW4A 2E17A 2HUXA 3FQ6A 2EH2A 2EEQA 2YBQA 3HH1A 2E8SA 2EMRA 1CBFA 2ENIA 2E8HA 2DXVA 2EGBA 1VHVA 2ED5A 2BB3A 2E16A 2ED3A 2QBUA 2DXWA 2EGSA 3FFYA 2E8RA 2OWKA 2PCMA 2ELDA 2HUVA 2DXXA 2EKAA 2P6DA 2P5CA 1V9AA 3ND1A 2EK2A 2HUQA 2EK7A 2PB5A 3KWPA 2DEKA 2E7RA 1PJQA
chains in the Genus database with same CATH superfamily

3TIXB 2EL1A 2PCHA 2DV7A 4MV5A 2DV4A 2HUTA 4MV0A 2PCAA 2OWUA 1PJSA 4E16A 3KELA 2OWVA 3LMMA 1PJTA 3SZLA 2EH4A 2EL0A 2DV3A 1S4DA 2P9DA 2P6IA 2PB4A 2DSIA 3I4TA 1WDEA 3KEFA 2EHLA 3ZGLA 3NEIA 2E4NA 2EK4A 2PCKA 2E8QA 3UV6A 2EJZA 2PCIA 2P2XA 4H4CA 2E0NA 2NPNA 2E0KA 1VCEA 3NDCA 3UV7A 2EN5A 2YBOA 3NUTA 2CBFA 3UTDA 2PB6A 2E07A 3KE9A 2EL2A 2ZVCA 3T0FA 2EK3A 2OWGA 3F7TA 2EJJA 2DSHA 2DV5A 2PCGA 2P6LA 3SZUA 1VE2A 2DSGA 2P5FA 4H4DA 3KE8A 2KYYA 3UTCA 2EH5A 2ELEA 2P6KA 2HR8A 3T0GA 1VA0A 1WNGA 2E15A 2Z6RA 2OWFA 2EJKA 2E4RA 2EHCA 2ZVBA 3URKA 2E08A 3UV3A 2EL3A 4H4EA 2EMUA 1WYZA 2EGLA 5HW4A 2E17A 4MUYA 2HUXA 3FQ6A 3KEMA 2EH2A 2EEQA 2YBQA 3HH1A 3SZOA 2E8SA 2EMRA 1CBFA 2ENIA 2E8HA 2DXVA 2EGBA 1VHVA 2ED5A 2BB3A 2E16A 2ED3A 2QBUA 2DXWA 2EGSA 4EB3A 3FFYA 2E8RA 2OWKA 2PCMA 2ELDA 2HUVA 2DXXA 4N7BA 3DNFA 3UWMA 2EKAA 2P6DA 3ZGNA 2P5CA 1V9AA 3ND1A 4MUXA 2EK2A 2HUQA 2EK7A 2PB5A 3KWPA 2DEKA 2E7RA 1PJQA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2EL1 A;  2PCH A;  2DV7 A;  2DV4 A;  2HUT A;  2PCA A;  2OWU A;  1PJS A;  4E16 A;  2OWV A;  1PJT A;  2EH4 A;  2EL0 A;  2DV3 A;  1S4D A;  2P9D A;  2P6I A;  2PB4 A;  2DSI A;  3I4T A;  1WDE A;  2EHL A;  3NEI A;  2E4N A;  2EK4 A;  2PCK A;  2E8Q A;  2EJZ A;  2PCI A;  2P2X A;  2E0N A;  2NPN A;  2E0K A;  1VCE A;  3NDC A;  2EN5 A;  2YBO A;  3NUT A;  2CBF A;  2PB6 A;  2E07 A;  2EL2 A;  2ZVC A;  2EK3 A;  2OWG A;  2EJJ A;  2DSH A;  2DV5 A;  2PCG A;  2P6L A;  1VE2 A;  2DSG A;  2P5F A;  2EH5 A;  2ELE A;  2P6K A;  2HR8 A;  1VA0 A;  1WNG A;  2E15 A;  2Z6R A;  2OWF A;  2EJK A;  2E4R A;  2EHC A;  2ZVB A;  2E08 A;  2EL3 A;  2EMU A;  1WYZ A;  2EGL A;  5HW4 A;  2E17 A;  2HUX A;  3FQ6 A;  2EH2 A;  2EEQ A;  2YBQ A;  3HH1 A;  2E8S A;  2EMR A;  1CBF A;  2ENI A;  2E8H A;  2DXV A;  2EGB A;  1VHV A;  2ED5 A;  2BB3 A;  2E16 A;  2ED3 A;  2QBU A;  2DXW A;  2EGS A;  3FFY A;  2E8R A;  2OWK A;  2PCM A;  2ELD A;  2HUV A;  2DXX A;  2EKA A;  2P6D A;  2P5C A;  1V9A A;  3ND1 A;  2EK2 A;  2HUQ A;  2EK7 A;  2PB5 A;  3KWP A;  2DEK A;  2E7R A;  1PJQ A; 
#chains in the Genus database with same CATH topology
 3TIX B;  2EL1 A;  2PCH A;  2DV7 A;  4MV5 A;  2DV4 A;  2HUT A;  4MV0 A;  2PCA A;  2OWU A;  1PJS A;  4E16 A;  3KEL A;  2OWV A;  3LMM A;  1PJT A;  3SZL A;  2EH4 A;  2EL0 A;  2DV3 A;  1S4D A;  2P9D A;  2P6I A;  2PB4 A;  2DSI A;  3I4T A;  1WDE A;  3KEF A;  2EHL A;  3ZGL A;  3NEI A;  2E4N A;  2EK4 A;  2PCK A;  2E8Q A;  3UV6 A;  2EJZ A;  2PCI A;  2P2X A;  4H4C A;  2E0N A;  2NPN A;  2E0K A;  1VCE A;  3NDC A;  3UV7 A;  2EN5 A;  2YBO A;  3NUT A;  2CBF A;  3UTD A;  2PB6 A;  2E07 A;  3KE9 A;  2EL2 A;  2ZVC A;  3T0F A;  2EK3 A;  2OWG A;  3F7T A;  2EJJ A;  2DSH A;  2DV5 A;  2PCG A;  2P6L A;  3SZU A;  1VE2 A;  2DSG A;  2P5F A;  4H4D A;  3KE8 A;  2KYY A;  3UTC A;  2EH5 A;  2ELE A;  2P6K A;  2HR8 A;  3T0G A;  1VA0 A;  1WNG A;  2E15 A;  2Z6R A;  2OWF A;  2EJK A;  2E4R A;  2EHC A;  2ZVB A;  3URK A;  2E08 A;  3UV3 A;  2EL3 A;  4H4E A;  2EMU A;  1WYZ A;  2EGL A;  5HW4 A;  2E17 A;  4MUY A;  2HUX A;  3FQ6 A;  3KEM A;  2EH2 A;  2EEQ A;  2YBQ A;  3HH1 A;  3SZO A;  2E8S A;  2EMR A;  1CBF A;  2ENI A;  2E8H A;  2DXV A;  2EGB A;  1VHV A;  2ED5 A;  2BB3 A;  2E16 A;  2ED3 A;  2QBU A;  2DXW A;  2EGS A;  4EB3 A;  3FFY A;  2E8R A;  2OWK A;  2PCM A;  2ELD A;  2HUV A;  2DXX A;  4N7B A;  3DNF A;  3UWM A;  2EKA A;  2P6D A;  3ZGN A;  2P5C A;  1V9A A;  3ND1 A;  4MUX A;  2EK2 A;  2HUQ A;  2EK7 A;  2PB5 A;  3KWP A;  2DEK A;  2E7R A;  1PJQ A; 
#chains in the Genus database with same CATH homology
 3TIX B;  2EL1 A;  2PCH A;  2DV7 A;  4MV5 A;  2DV4 A;  2HUT A;  4MV0 A;  2PCA A;  2OWU A;  1PJS A;  4E16 A;  3KEL A;  2OWV A;  3LMM A;  1PJT A;  3SZL A;  2EH4 A;  2EL0 A;  2DV3 A;  1S4D A;  2P9D A;  2P6I A;  2PB4 A;  2DSI A;  3I4T A;  1WDE A;  3KEF A;  2EHL A;  3ZGL A;  3NEI A;  2E4N A;  2EK4 A;  2PCK A;  2E8Q A;  3UV6 A;  2EJZ A;  2PCI A;  2P2X A;  4H4C A;  2E0N A;  2NPN A;  2E0K A;  1VCE A;  3NDC A;  3UV7 A;  2EN5 A;  2YBO A;  3NUT A;  2CBF A;  3UTD A;  2PB6 A;  2E07 A;  3KE9 A;  2EL2 A;  2ZVC A;  3T0F A;  2EK3 A;  2OWG A;  3F7T A;  2EJJ A;  2DSH A;  2DV5 A;  2PCG A;  2P6L A;  3SZU A;  1VE2 A;  2DSG A;  2P5F A;  4H4D A;  3KE8 A;  2KYY A;  3UTC A;  2EH5 A;  2ELE A;  2P6K A;  2HR8 A;  3T0G A;  1VA0 A;  1WNG A;  2E15 A;  2Z6R A;  2OWF A;  2EJK A;  2E4R A;  2EHC A;  2ZVB A;  3URK A;  2E08 A;  3UV3 A;  2EL3 A;  4H4E A;  2EMU A;  1WYZ A;  2EGL A;  5HW4 A;  2E17 A;  4MUY A;  2HUX A;  3FQ6 A;  3KEM A;  2EH2 A;  2EEQ A;  2YBQ A;  3HH1 A;  3SZO A;  2E8S A;  2EMR A;  1CBF A;  2ENI A;  2E8H A;  2DXV A;  2EGB A;  1VHV A;  2ED5 A;  2BB3 A;  2E16 A;  2ED3 A;  2QBU A;  2DXW A;  2EGS A;  4EB3 A;  3FFY A;  2E8R A;  2OWK A;  2PCM A;  2ELD A;  2HUV A;  2DXX A;  4N7B A;  3DNF A;  3UWM A;  2EKA A;  2P6D A;  3ZGN A;  2P5C A;  1V9A A;  3ND1 A;  4MUX A;  2EK2 A;  2HUQ A;  2EK7 A;  2PB5 A;  3KWP A;  2DEK A;  2E7R A;  1PJQ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2EJKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations