2EK3A

Structural study of project id ph0725 from pyrococcus horikoshii ot3 (l3m)
Total Genus 80

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
264
structure length
264
Chain Sequence
VMYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (3-7)TIV2 (85-88)S4 (80-84)TVIII1 (27-30)S2 (29-32)S3 (56-57)TI1 (39-42)TI2 (87-90)S5 (108-111)TIV3 (89-92)AH4 (94-103)3H2 (120-123)AH9 (244-254)TI3 (126-129)S6 (130-136)AH6 (146-158)TII'1 (140-143)AH7 (178-192)S7 (161-166)TIV6 (239-242)S9 (174-175)S8 (168-169)3H3 (170-172)AH8 (221-225)TVIII2 (195-198)TI5 (198-201)S11 (215-220)S10 (202-207)TII1 (208-211)TIV5 (211-214)3H4 (258-261)O1 (261-263)TIV1 (34-37)AH2 (44-51)S12 (234-238)AH3 (60-76)AH5 (116-119)3H1 (13-15)AH1 (18-26)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L3M)
rcsb
molecule keywords diphthine synthase
total genus 80
structure length 264
sequence length 264
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2ek3A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2ek3A01
2E15A 2E8HA 2P6IA 2EL3A 2QBUA 2ENIA 2BB3A 2E7RA 2HUTA 2EHCA 1CBFA 2DSGA 2E16A 2P6DA 2EGBA 2DV5A 2HUXA 3I4TA 2E08A 2E4RA 2EMUA 2ZVBA 2P5CA 3ND1A 2ELEA 2P2XA 2YBOA 2EGLA 5HW4A 2CBFA 2ZVCA 2PCIA 1VCEA 2EK2A 3NDCA 2E07A 2ED3A 3HH1A 2OWGA 2EHLA 2E8QA 2E0KA 2DV3A 2EN5A 2NPNA 1VA0A 2PB4A 2EK3A 2DEKA 2EMRA 2HUQA 3FFYA 2P6LA 2DSHA 2OWKA 1PJSA 2E8SA 2PCMA 2ELDA 1PJQA 2DSIA 2HUVA 2DV4A 2YBQA 2Z6RA 2DXVA 2EH4A 2EL1A 2OWUA 3NEIA 2EJZA 2E4NA 2EKAA 2E17A 1WNGA 2PB6A 1S4DA 2PCGA 2EJKA 2E8RA 2PCAA 2EK7A 2EL2A 2OWVA 2EK4A 3KWPA 3FQ6A 2DXXA 2P9DA 1V9AA 2OWFA 2DXWA 2PB5A 2DV7A 2E0NA 2PCHA 3NUTA 1WYZA 1WDEA 1VHVA 2P6KA 1VE2A 2PCKA 2EL0A 4E16A 2EEQA 2EJJA 1PJTA 2ED5A 2P5FA 2EGSA 2HR8A 2EH5A 2EH2A
chains in the Genus database with same CATH superfamily
3KEMA 2E15A 2E8HA 3SZUA 2P6IA 2EL3A 2QBUA 2ENIA 2BB3A 2E7RA 2HUTA 2EHCA 1CBFA 4H4DA 2DSGA 2E16A 3ZGNA 2P6DA 2EGBA 3T0GA 2DV5A 2HUXA 3I4TA 2E08A 2E4RA 2EMUA 3KEFA 4MV0A 2ZVBA 2P5CA 3ZGLA 3ND1A 2ELEA 2P2XA 2YBOA 2EGLA 5HW4A 2CBFA 2ZVCA 3UV6A 2PCIA 1VCEA 4MV5A 2EK2A 3NDCA 2E07A 2ED3A 3DNFA 3HH1A 2OWGA 2EHLA 2E8QA 2E0KA 3KELA 2DV3A 2EN5A 2NPNA 1VA0A 2PB4A 2EK3A 2DEKA 3F7TA 2EMRA 2HUQA 3FFYA 2P6LA 3SZOA 3KE9A 2DSHA 2OWKA 3UTDA 4EB3A 1PJSA 2E8SA 2PCMA 2ELDA 1PJQA 2DSIA 2HUVA 2DV4A 2YBQA 3URKA 2Z6RA 2DXVA 2EH4A 2EL1A 4H4EA 2OWUA 3NEIA 2KYYA 2EJZA 4H4CA 2E4NA 4MUXA 3UWMA 2EKAA 2E17A 1WNGA 2PB6A 3UV7A 1S4DA 2PCGA 2EJKA 2E8RA 2PCAA 2EK7A 2EL2A 2OWVA 3SZLA 2EK4A 3KWPA 3FQ6A 2DXXA 2P9DA 1V9AA 2OWFA 2DXWA 2PB5A 2DV7A 2E0NA 3LMMA 2PCHA 3KE8A 3NUTA 3UTCA 1WYZA 1WDEA 1VHVA 2P6KA 1VE2A 2PCKA 4MUYA 2EL0A 4E16A 2EEQA 2EJJA 1PJTA 4N7BA 2ED5A 2P5FA 3T0FA 3UV3A 2EGSA 2HR8A 3TIXB 2EH5A 2EH2A
chains in the Genus database with same CATH topology
3KEMA 2E15A 2E8HA 3SZUA 2P6IA 2EL3A 2QBUA 2ENIA 2BB3A 2E7RA 2HUTA 2EHCA 1CBFA 4H4DA 2DSGA 2E16A 3ZGNA 2P6DA 2EGBA 3T0GA 2DV5A 2HUXA 3I4TA 2E08A 2E4RA 2EMUA 3KEFA 4MV0A 2ZVBA 2P5CA 3ZGLA 3ND1A 2ELEA 2P2XA 2YBOA 2EGLA 5HW4A 2CBFA 2ZVCA 3UV6A 2PCIA 1VCEA 4MV5A 2EK2A 3NDCA 2E07A 2ED3A 3DNFA 3HH1A 2OWGA 2EHLA 2E8QA 2E0KA 3KELA 2DV3A 2EN5A 2NPNA 1VA0A 2PB4A 2EK3A 2DEKA 3F7TA 2EMRA 2HUQA 3FFYA 2P6LA 3SZOA 3KE9A 2DSHA 2OWKA 3UTDA 4EB3A 1PJSA 2E8SA 2PCMA 2ELDA 1PJQA 2DSIA 2HUVA 2DV4A 2YBQA 3URKA 2Z6RA 2DXVA 2EH4A 2EL1A 4H4EA 2OWUA 3NEIA 2KYYA 2EJZA 4H4CA 2E4NA 4MUXA 3UWMA 2EKAA 2E17A 1WNGA 2PB6A 3UV7A 1S4DA 2PCGA 2EJKA 2E8RA 2PCAA 2EK7A 2EL2A 2OWVA 3SZLA 2EK4A 3KWPA 3FQ6A 2DXXA 2P9DA 1V9AA 2OWFA 2DXWA 2PB5A 2DV7A 2E0NA 3LMMA 2PCHA 3KE8A 3NUTA 3UTCA 1WYZA 1WDEA 1VHVA 2P6KA 1VE2A 2PCKA 4MUYA 2EL0A 4E16A 2EEQA 2EJJA 1PJTA 4N7BA 2ED5A 2P5FA 3T0FA 3UV3A 2EGSA 2HR8A 3TIXB 2EH5A 2EH2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E15 A;  2E8H A;  2P6I A;  2EL3 A;  2QBU A;  2ENI A;  2BB3 A;  2E7R A;  2HUT A;  2EHC A;  1CBF A;  2DSG A;  2E16 A;  2P6D A;  2EGB A;  2DV5 A;  2HUX A;  3I4T A;  2E08 A;  2E4R A;  2EMU A;  2ZVB A;  2P5C A;  3ND1 A;  2ELE A;  2P2X A;  2YBO A;  2EGL A;  5HW4 A;  2CBF A;  2ZVC A;  2PCI A;  1VCE A;  2EK2 A;  3NDC A;  2E07 A;  2ED3 A;  3HH1 A;  2OWG A;  2EHL A;  2E8Q A;  2E0K A;  2DV3 A;  2EN5 A;  2NPN A;  1VA0 A;  2PB4 A;  2EK3 A;  2DEK A;  2EMR A;  2HUQ A;  3FFY A;  2P6L A;  2DSH A;  2OWK A;  1PJS A;  2E8S A;  2PCM A;  2ELD A;  1PJQ A;  2DSI A;  2HUV A;  2DV4 A;  2YBQ A;  2Z6R A;  2DXV A;  2EH4 A;  2EL1 A;  2OWU A;  3NEI A;  2EJZ A;  2E4N A;  2EKA A;  2E17 A;  1WNG A;  2PB6 A;  1S4D A;  2PCG A;  2EJK A;  2E8R A;  2PCA A;  2EK7 A;  2EL2 A;  2OWV A;  2EK4 A;  3KWP A;  3FQ6 A;  2DXX A;  2P9D A;  1V9A A;  2OWF A;  2DXW A;  2PB5 A;  2DV7 A;  2E0N A;  2PCH A;  3NUT A;  1WYZ A;  1WDE A;  1VHV A;  2P6K A;  1VE2 A;  2PCK A;  2EL0 A;  4E16 A;  2EEQ A;  2EJJ A;  1PJT A;  2ED5 A;  2P5F A;  2EGS A;  2HR8 A;  2EH5 A;  2EH2 A; 
#chains in the Genus database with same CATH topology
 3KEM A;  2E15 A;  2E8H A;  3SZU A;  2P6I A;  2EL3 A;  2QBU A;  2ENI A;  2BB3 A;  2E7R A;  2HUT A;  2EHC A;  1CBF A;  4H4D A;  2DSG A;  2E16 A;  3ZGN A;  2P6D A;  2EGB A;  3T0G A;  2DV5 A;  2HUX A;  3I4T A;  2E08 A;  2E4R A;  2EMU A;  3KEF A;  4MV0 A;  2ZVB A;  2P5C A;  3ZGL A;  3ND1 A;  2ELE A;  2P2X A;  2YBO A;  2EGL A;  5HW4 A;  2CBF A;  2ZVC A;  3UV6 A;  2PCI A;  1VCE A;  4MV5 A;  2EK2 A;  3NDC A;  2E07 A;  2ED3 A;  3DNF A;  3HH1 A;  2OWG A;  2EHL A;  2E8Q A;  2E0K A;  3KEL A;  2DV3 A;  2EN5 A;  2NPN A;  1VA0 A;  2PB4 A;  2EK3 A;  2DEK A;  3F7T A;  2EMR A;  2HUQ A;  3FFY A;  2P6L A;  3SZO A;  3KE9 A;  2DSH A;  2OWK A;  3UTD A;  4EB3 A;  1PJS A;  2E8S A;  2PCM A;  2ELD A;  1PJQ A;  2DSI A;  2HUV A;  2DV4 A;  2YBQ A;  3URK A;  2Z6R A;  2DXV A;  2EH4 A;  2EL1 A;  4H4E A;  2OWU A;  3NEI A;  2KYY A;  2EJZ A;  4H4C A;  2E4N A;  4MUX A;  3UWM A;  2EKA A;  2E17 A;  1WNG A;  2PB6 A;  3UV7 A;  1S4D A;  2PCG A;  2EJK A;  2E8R A;  2PCA A;  2EK7 A;  2EL2 A;  2OWV A;  3SZL A;  2EK4 A;  3KWP A;  3FQ6 A;  2DXX A;  2P9D A;  1V9A A;  2OWF A;  2DXW A;  2PB5 A;  2DV7 A;  2E0N A;  3LMM A;  2PCH A;  3KE8 A;  3NUT A;  3UTC A;  1WYZ A;  1WDE A;  1VHV A;  2P6K A;  1VE2 A;  2PCK A;  4MUY A;  2EL0 A;  4E16 A;  2EEQ A;  2EJJ A;  1PJT A;  4N7B A;  2ED5 A;  2P5F A;  3T0F A;  3UV3 A;  2EGS A;  2HR8 A;  3TIX B;  2EH5 A;  2EH2 A; 
#chains in the Genus database with same CATH homology
 3KEM A;  2E15 A;  2E8H A;  3SZU A;  2P6I A;  2EL3 A;  2QBU A;  2ENI A;  2BB3 A;  2E7R A;  2HUT A;  2EHC A;  1CBF A;  4H4D A;  2DSG A;  2E16 A;  3ZGN A;  2P6D A;  2EGB A;  3T0G A;  2DV5 A;  2HUX A;  3I4T A;  2E08 A;  2E4R A;  2EMU A;  3KEF A;  4MV0 A;  2ZVB A;  2P5C A;  3ZGL A;  3ND1 A;  2ELE A;  2P2X A;  2YBO A;  2EGL A;  5HW4 A;  2CBF A;  2ZVC A;  3UV6 A;  2PCI A;  1VCE A;  4MV5 A;  2EK2 A;  3NDC A;  2E07 A;  2ED3 A;  3DNF A;  3HH1 A;  2OWG A;  2EHL A;  2E8Q A;  2E0K A;  3KEL A;  2DV3 A;  2EN5 A;  2NPN A;  1VA0 A;  2PB4 A;  2EK3 A;  2DEK A;  3F7T A;  2EMR A;  2HUQ A;  3FFY A;  2P6L A;  3SZO A;  3KE9 A;  2DSH A;  2OWK A;  3UTD A;  4EB3 A;  1PJS A;  2E8S A;  2PCM A;  2ELD A;  1PJQ A;  2DSI A;  2HUV A;  2DV4 A;  2YBQ A;  3URK A;  2Z6R A;  2DXV A;  2EH4 A;  2EL1 A;  4H4E A;  2OWU A;  3NEI A;  2KYY A;  2EJZ A;  4H4C A;  2E4N A;  4MUX A;  3UWM A;  2EKA A;  2E17 A;  1WNG A;  2PB6 A;  3UV7 A;  1S4D A;  2PCG A;  2EJK A;  2E8R A;  2PCA A;  2EK7 A;  2EL2 A;  2OWV A;  3SZL A;  2EK4 A;  3KWP A;  3FQ6 A;  2DXX A;  2P9D A;  1V9A A;  2OWF A;  2DXW A;  2PB5 A;  2DV7 A;  2E0N A;  3LMM A;  2PCH A;  3KE8 A;  3NUT A;  3UTC A;  1WYZ A;  1WDE A;  1VHV A;  2P6K A;  1VE2 A;  2PCK A;  4MUY A;  2EL0 A;  4E16 A;  2EEQ A;  2EJJ A;  1PJT A;  4N7B A;  2ED5 A;  2P5F A;  3T0F A;  3UV3 A;  2EGS A;  2HR8 A;  3TIX B;  2EH5 A;  2EH2 A; 
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