2EL1 | Genus

Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	79
sequence length	265
structure length	265
Chain Sequence	MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTMGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Pyrococcus horikoshii
publication title	Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L44M) rcsb
molecule keywords	diphthine synthase
total genus	79
structure length	265
sequence length	265
chains with identical sequence	B
ec nomenclature	ec 2.1.1.98: Diphthine synthase.
pdb deposition date	2007-03-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00590	TP_methylase	Tetrapyrrole (Corrin/Porphyrin) Methylases

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.950.10	Alpha Beta	2-Layer Sandwich	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	2el1A02
3.40.1010.10	Alpha Beta	3-Layer(aba) Sandwich	Cobalt-precorrin-4 Transmethylase; domain 1	Cobalt-precorrin-4 Transmethylase; Domain 1	2el1A01

1WNGA 3NDCA 2ED5A 2P5CA 2P6DA 2E8HA 1CBFA 2DV4A 2EMUA 1VE2A 2EEQA 2EL3A 2EH5A 2PCGA 1VA0A 2EK7A 2DSGA 2EGSA 2BB3A 2OWVA 2E0NA 1V9AA 2EGBA 2DXWA 1S4DA 2OWKA 2DV5A 2NPNA 2EH4A 3FQ6A 1VCEA 3NEIA 2E4NA 2EH2A 2ELDA 2PCIA 2ENIA 1WYZA 1VHVA 2P2XA 2HUQA 2HUTA 2DSIA 2E16A 2EKAA 2CBFA 2E0KA 2HUXA 2EK2A 2PB5A 2EHCA 2PCMA 2DXXA 2E8QA 2PB4A 5HW4A 2E15A 2P6KA 2PCHA 3FFYA 2E07A 2E08A 2YBQA 2YBOA 2E7RA 3HH1A 2P9DA 2OWGA 2EJZA 2ED3A 4E16A 2EL1A 2QBUA 2ZVBA 1WDEA 2HR8A 3ND1A 2HUVA 2E8SA 2PB6A 2PCAA 2EL2A 2EJKA 2DV3A 2EL0A 2PCKA 2DSHA 2ZVCA 2E4RA 2DXVA 1PJQA 1PJSA 2P5FA 2EJJA 3KWPA 2OWFA 2EHLA 2EMRA 2EGLA 2Z6RA 3I4TA 1PJTA 2DV7A 2EK4A 2OWUA 2P6IA 2P6LA 2EK3A 2EN5A 2E17A 2E8RA 3NUTA 2DEKA 2ELEA
chains in the Genus database with same CATH superfamily

1WNGA 3NDCA 2ED5A 2P5CA 2P6DA 3KEMA 2E8HA 3UV3A 1CBFA 2DV4A 2EMUA 1VE2A 4H4EA 2EEQA 2EL3A 2EH5A 2PCGA 3KELA 1VA0A 2EK7A 2DSGA 2EGSA 2BB3A 2OWVA 2E0NA 1V9AA 3TIXB 3F7TA 2EGBA 3URKA 4EB3A 2DXWA 3KE8A 1S4DA 2OWKA 3UTCA 2DV5A 2NPNA 2EH4A 3FQ6A 1VCEA 3NEIA 3KE9A 2E4NA 2EH2A 2ELDA 2PCIA 2ENIA 3SZLA 1WYZA 1VHVA 2P2XA 2HUQA 2HUTA 2DSIA 2E16A 3ZGNA 2EKAA 2CBFA 2E0KA 2HUXA 2EK2A 2PB5A 2EHCA 2PCMA 3KEFA 2DXXA 2E8QA 2PB4A 4H4CA 3UWMA 5HW4A 4N7BA 2E15A 2P6KA 2PCHA 3FFYA 2E07A 2E08A 2YBQA 2YBOA 2E7RA 3HH1A 2P9DA 2OWGA 2EJZA 2ED3A 4E16A 2EL1A 2QBUA 3UTDA 2ZVBA 1WDEA 2HR8A 4H4DA 3ND1A 3LMMA 2HUVA 2E8SA 2PB6A 2PCAA 2EL2A 2EJKA 2DV3A 2EL0A 2PCKA 2DSHA 2ZVCA 4MV5A 2E4RA 2DXVA 1PJQA 1PJSA 2P5FA 3UV6A 2EJJA 3ZGLA 3SZUA 3DNFA 3KWPA 2OWFA 2EHLA 2EMRA 2EGLA 2Z6RA 3I4TA 2KYYA 4MUYA 3T0GA 1PJTA 2DV7A 2EK4A 2OWUA 2P6IA 2P6LA 2EK3A 4MUXA 2EN5A 4MV0A 2E17A 3T0FA 2E8RA 3SZOA 3UV7A 3NUTA 2DEKA 2ELEA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1WNG A;  3NDC A;  2ED5 A;  2P5C A;  2P6D A;  2E8H A;  1CBF A;  2DV4 A;  2EMU A;  1VE2 A;  2EEQ A;  2EL3 A;  2EH5 A;  2PCG A;  1VA0 A;  2EK7 A;  2DSG A;  2EGS A;  2BB3 A;  2OWV A;  2E0N A;  1V9A A;  2EGB A;  2DXW A;  1S4D A;  2OWK A;  2DV5 A;  2NPN A;  2EH4 A;  3FQ6 A;  1VCE A;  3NEI A;  2E4N A;  2EH2 A;  2ELD A;  2PCI A;  2ENI A;  1WYZ A;  1VHV A;  2P2X A;  2HUQ A;  2HUT A;  2DSI A;  2E16 A;  2EKA A;  2CBF A;  2E0K A;  2HUX A;  2EK2 A;  2PB5 A;  2EHC A;  2PCM A;  2DXX A;  2E8Q A;  2PB4 A;  5HW4 A;  2E15 A;  2P6K A;  2PCH A;  3FFY A;  2E07 A;  2E08 A;  2YBQ A;  2YBO A;  2E7R A;  3HH1 A;  2P9D A;  2OWG A;  2EJZ A;  2ED3 A;  4E16 A;  2EL1 A;  2QBU A;  2ZVB A;  1WDE A;  2HR8 A;  3ND1 A;  2HUV A;  2E8S A;  2PB6 A;  2PCA A;  2EL2 A;  2EJK A;  2DV3 A;  2EL0 A;  2PCK A;  2DSH A;  2ZVC A;  2E4R A;  2DXV A;  1PJQ A;  1PJS A;  2P5F A;  2EJJ A;  3KWP A;  2OWF A;  2EHL A;  2EMR A;  2EGL A;  2Z6R A;  3I4T A;  1PJT A;  2DV7 A;  2EK4 A;  2OWU A;  2P6I A;  2P6L A;  2EK3 A;  2EN5 A;  2E17 A;  2E8R A;  3NUT A;  2DEK A;  2ELE A; 
#chains in the Genus database with same CATH topology
 1WNG A;  3NDC A;  2ED5 A;  2P5C A;  2P6D A;  3KEM A;  2E8H A;  3UV3 A;  1CBF A;  2DV4 A;  2EMU A;  1VE2 A;  4H4E A;  2EEQ A;  2EL3 A;  2EH5 A;  2PCG A;  3KEL A;  1VA0 A;  2EK7 A;  2DSG A;  2EGS A;  2BB3 A;  2OWV A;  2E0N A;  1V9A A;  3TIX B;  3F7T A;  2EGB A;  3URK A;  4EB3 A;  2DXW A;  3KE8 A;  1S4D A;  2OWK A;  3UTC A;  2DV5 A;  2NPN A;  2EH4 A;  3FQ6 A;  1VCE A;  3NEI A;  3KE9 A;  2E4N A;  2EH2 A;  2ELD A;  2PCI A;  2ENI A;  3SZL A;  1WYZ A;  1VHV A;  2P2X A;  2HUQ A;  2HUT A;  2DSI A;  2E16 A;  3ZGN A;  2EKA A;  2CBF A;  2E0K A;  2HUX A;  2EK2 A;  2PB5 A;  2EHC A;  2PCM A;  3KEF A;  2DXX A;  2E8Q A;  2PB4 A;  4H4C A;  3UWM A;  5HW4 A;  4N7B A;  2E15 A;  2P6K A;  2PCH A;  3FFY A;  2E07 A;  2E08 A;  2YBQ A;  2YBO A;  2E7R A;  3HH1 A;  2P9D A;  2OWG A;  2EJZ A;  2ED3 A;  4E16 A;  2EL1 A;  2QBU A;  3UTD A;  2ZVB A;  1WDE A;  2HR8 A;  4H4D A;  3ND1 A;  3LMM A;  2HUV A;  2E8S A;  2PB6 A;  2PCA A;  2EL2 A;  2EJK A;  2DV3 A;  2EL0 A;  2PCK A;  2DSH A;  2ZVC A;  4MV5 A;  2E4R A;  2DXV A;  1PJQ A;  1PJS A;  2P5F A;  3UV6 A;  2EJJ A;  3ZGL A;  3SZU A;  3DNF A;  3KWP A;  2OWF A;  2EHL A;  2EMR A;  2EGL A;  2Z6R A;  3I4T A;  2KYY A;  4MUY A;  3T0G A;  1PJT A;  2DV7 A;  2EK4 A;  2OWU A;  2P6I A;  2P6L A;  2EK3 A;  4MUX A;  2EN5 A;  4MV0 A;  2E17 A;  3T0F A;  2E8R A;  3SZO A;  3UV7 A;  3NUT A;  2DEK A;  2ELE A; 
#chains in the Genus database with same CATH homology
 1WNG A;  3NDC A;  2ED5 A;  2P5C A;  2P6D A;  3KEM A;  2E8H A;  3UV3 A;  1CBF A;  2DV4 A;  2EMU A;  1VE2 A;  4H4E A;  2EEQ A;  2EL3 A;  2EH5 A;  2PCG A;  3KEL A;  1VA0 A;  2EK7 A;  2DSG A;  2EGS A;  2BB3 A;  2OWV A;  2E0N A;  1V9A A;  3TIX B;  3F7T A;  2EGB A;  3URK A;  4EB3 A;  2DXW A;  3KE8 A;  1S4D A;  2OWK A;  3UTC A;  2DV5 A;  2NPN A;  2EH4 A;  3FQ6 A;  1VCE A;  3NEI A;  3KE9 A;  2E4N A;  2EH2 A;  2ELD A;  2PCI A;  2ENI A;  3SZL A;  1WYZ A;  1VHV A;  2P2X A;  2HUQ A;  2HUT A;  2DSI A;  2E16 A;  3ZGN A;  2EKA A;  2CBF A;  2E0K A;  2HUX A;  2EK2 A;  2PB5 A;  2EHC A;  2PCM A;  3KEF A;  2DXX A;  2E8Q A;  2PB4 A;  4H4C A;  3UWM A;  5HW4 A;  4N7B A;  2E15 A;  2P6K A;  2PCH A;  3FFY A;  2E07 A;  2E08 A;  2YBQ A;  2YBO A;  2E7R A;  3HH1 A;  2P9D A;  2OWG A;  2EJZ A;  2ED3 A;  4E16 A;  2EL1 A;  2QBU A;  3UTD A;  2ZVB A;  1WDE A;  2HR8 A;  4H4D A;  3ND1 A;  3LMM A;  2HUV A;  2E8S A;  2PB6 A;  2PCA A;  2EL2 A;  2EJK A;  2DV3 A;  2EL0 A;  2PCK A;  2DSH A;  2ZVC A;  4MV5 A;  2E4R A;  2DXV A;  1PJQ A;  1PJS A;  2P5F A;  3UV6 A;  2EJJ A;  3ZGL A;  3SZU A;  3DNF A;  3KWP A;  2OWF A;  2EHL A;  2EMR A;  2EGL A;  2Z6R A;  3I4T A;  2KYY A;  4MUY A;  3T0G A;  1PJT A;  2DV7 A;  2EK4 A;  2OWU A;  2P6I A;  2P6L A;  2EK3 A;  4MUX A;  2EN5 A;  4MV0 A;  2E17 A;  3T0F A;  2E8R A;  3SZO A;  3UV7 A;  3NUT A;  2DEK A;  2ELE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2EL1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations