2OWGA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 86

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREMLRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (79-84)TI1 (12-15)TI3 (39-42)TVIII1 (27-30)AH4 (94-104)S2 (29-33)TIV2 (85-88)TIV3 (89-92)3H1 (120-123)AH9 (244-254)3H2 (127-129)S6 (130-136)S7 (161-166)AH6 (146-158)TII'1 (140-143)S8 (168-169)AH7 (178-192)3H3 (170-172)S9 (174-175)S12 (234-238)AH8 (221-225)TII1 (208-211)TIV4 (206-209)S11 (215-220)3H4 (258-261)AH1 (18-25)TIV1 (34-37)TI4 (87-90)S5 (107-111)TI5 (198-201)TVIII2 (195-198)S10 (202-207)S3 (56-58)AH3 (60-76)AH5 (116-119)AH2 (44-51)S1 (2-7)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
molecule keywords diphthine synthase
total genus 86
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2owgA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2owgA01
2OWVA 2P5CA 2DSHA 2EGBA 2ELEA 3FQ6A 1PJTA 2E17A 2EK7A 2DEKA 2DV7A 1VHVA 1S4DA 2EH4A 3I4TA 2PCGA 2OWUA 2ZVCA 2ED3A 2P6LA 2EL3A 1CBFA 2DSIA 2PCIA 2EJZA 2P5FA 2ED5A 3NEIA 2DXVA 2E8HA 2PCKA 2E15A 2NPNA 2E8QA 1VE2A 2E4RA 3FFYA 3HH1A 2BB3A 2E0NA 3KWPA 2EGSA 2ZVBA 2E8SA 2PCMA 2EEQA 1WYZA 2HUQA 2HUXA 2YBQA 3ND1A 2E7RA 2EK2A 2EMUA 2HUVA 2DSGA 2YBOA 2PCAA 2ELDA 2EHLA 2PB5A 1WDEA 2EHCA 2PB4A 2PB6A 2CBFA 2OWGA 2P6DA 2QBUA 3NUTA 2OWKA 2EK3A 2ENIA 2EGLA 2PCHA 2EN5A 2HUTA 2Z6RA 2E08A 4E16A 2EL1A 5HW4A 2DV5A 1WNGA 2E0KA 2P9DA 2EH5A 3NDCA 2EL0A 2EK4A 2P6IA 2E4NA 2HR8A 1VCEA 2DXXA 2P2XA 2P6KA 2E16A 2EJKA 1PJSA 2EL2A 1V9AA 1PJQA 1VA0A 2E8RA 2OWFA 2EJJA 2DV4A 2EMRA 2DV3A 2DXWA 2EH2A 2EKAA 2E07A
chains in the Genus database with same CATH superfamily
3UTCA 3F7TA 2OWVA 2P5CA 2DSHA 2EGBA 2ELEA 3FQ6A 1PJTA 2E17A 2EK7A 2DEKA 2DV7A 4MV0A 1VHVA 3TIXB 1S4DA 2EH4A 3I4TA 2PCGA 2OWUA 2ZVCA 2ED3A 2P6LA 2EL3A 1CBFA 2DSIA 2PCIA 2EJZA 3KELA 3ZGLA 2P5FA 2ED5A 3NEIA 2DXVA 3UV3A 2E8HA 2PCKA 2E15A 3T0FA 2NPNA 2E8QA 1VE2A 2E4RA 3FFYA 4EB3A 3SZUA 3HH1A 2BB3A 3UV7A 4MUYA 4H4EA 2E0NA 3KWPA 2EGSA 2ZVBA 2E8SA 2PCMA 2EEQA 1WYZA 2HUQA 2HUXA 4MUXA 2YBQA 3ND1A 2E7RA 2EK2A 2EMUA 2HUVA 2DSGA 2YBOA 3LMMA 2PCAA 3UWMA 2ELDA 2EHLA 2PB5A 1WDEA 4N7BA 3UTDA 2EHCA 4MV5A 2PB4A 2PB6A 2CBFA 2OWGA 3SZOA 2P6DA 2QBUA 3NUTA 2OWKA 3KEMA 2EK3A 2ENIA 2EGLA 2PCHA 3T0GA 2EN5A 2HUTA 2Z6RA 2E08A 4E16A 2EL1A 3DNFA 5HW4A 3KEFA 2DV5A 3KE8A 4H4CA 1WNGA 2E0KA 2KYYA 4H4DA 2P9DA 2EH5A 3NDCA 2EL0A 2EK4A 2P6IA 2E4NA 2HR8A 1VCEA 2DXXA 2P2XA 2P6KA 3ZGNA 2E16A 2EJKA 1PJSA 3SZLA 2EL2A 1V9AA 3URKA 1PJQA 1VA0A 2E8RA 2OWFA 2EJJA 2DV4A 2EMRA 3UV6A 2DV3A 3KE9A 2DXWA 2EH2A 2EKAA 2E07A
chains in the Genus database with same CATH topology
3UTCA 3F7TA 2OWVA 2P5CA 2DSHA 2EGBA 2ELEA 3FQ6A 1PJTA 2E17A 2EK7A 2DEKA 2DV7A 4MV0A 1VHVA 3TIXB 1S4DA 2EH4A 3I4TA 2PCGA 2OWUA 2ZVCA 2ED3A 2P6LA 2EL3A 1CBFA 2DSIA 2PCIA 2EJZA 3KELA 3ZGLA 2P5FA 2ED5A 3NEIA 2DXVA 3UV3A 2E8HA 2PCKA 2E15A 3T0FA 2NPNA 2E8QA 1VE2A 2E4RA 3FFYA 4EB3A 3SZUA 3HH1A 2BB3A 3UV7A 4MUYA 4H4EA 2E0NA 3KWPA 2EGSA 2ZVBA 2E8SA 2PCMA 2EEQA 1WYZA 2HUQA 2HUXA 4MUXA 2YBQA 3ND1A 2E7RA 2EK2A 2EMUA 2HUVA 2DSGA 2YBOA 3LMMA 2PCAA 3UWMA 2ELDA 2EHLA 2PB5A 1WDEA 4N7BA 3UTDA 2EHCA 4MV5A 2PB4A 2PB6A 2CBFA 2OWGA 3SZOA 2P6DA 2QBUA 3NUTA 2OWKA 3KEMA 2EK3A 2ENIA 2EGLA 2PCHA 3T0GA 2EN5A 2HUTA 2Z6RA 2E08A 4E16A 2EL1A 3DNFA 5HW4A 3KEFA 2DV5A 3KE8A 4H4CA 1WNGA 2E0KA 2KYYA 4H4DA 2P9DA 2EH5A 3NDCA 2EL0A 2EK4A 2P6IA 2E4NA 2HR8A 1VCEA 2DXXA 2P2XA 2P6KA 3ZGNA 2E16A 2EJKA 1PJSA 3SZLA 2EL2A 1V9AA 3URKA 1PJQA 1VA0A 2E8RA 2OWFA 2EJJA 2DV4A 2EMRA 3UV6A 2DV3A 3KE9A 2DXWA 2EH2A 2EKAA 2E07A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OWV A;  2P5C A;  2DSH A;  2EGB A;  2ELE A;  3FQ6 A;  1PJT A;  2E17 A;  2EK7 A;  2DEK A;  2DV7 A;  1VHV A;  1S4D A;  2EH4 A;  3I4T A;  2PCG A;  2OWU A;  2ZVC A;  2ED3 A;  2P6L A;  2EL3 A;  1CBF A;  2DSI A;  2PCI A;  2EJZ A;  2P5F A;  2ED5 A;  3NEI A;  2DXV A;  2E8H A;  2PCK A;  2E15 A;  2NPN A;  2E8Q A;  1VE2 A;  2E4R A;  3FFY A;  3HH1 A;  2BB3 A;  2E0N A;  3KWP A;  2EGS A;  2ZVB A;  2E8S A;  2PCM A;  2EEQ A;  1WYZ A;  2HUQ A;  2HUX A;  2YBQ A;  3ND1 A;  2E7R A;  2EK2 A;  2EMU A;  2HUV A;  2DSG A;  2YBO A;  2PCA A;  2ELD A;  2EHL A;  2PB5 A;  1WDE A;  2EHC A;  2PB4 A;  2PB6 A;  2CBF A;  2OWG A;  2P6D A;  2QBU A;  3NUT A;  2OWK A;  2EK3 A;  2ENI A;  2EGL A;  2PCH A;  2EN5 A;  2HUT A;  2Z6R A;  2E08 A;  4E16 A;  2EL1 A;  5HW4 A;  2DV5 A;  1WNG A;  2E0K A;  2P9D A;  2EH5 A;  3NDC A;  2EL0 A;  2EK4 A;  2P6I A;  2E4N A;  2HR8 A;  1VCE A;  2DXX A;  2P2X A;  2P6K A;  2E16 A;  2EJK A;  1PJS A;  2EL2 A;  1V9A A;  1PJQ A;  1VA0 A;  2E8R A;  2OWF A;  2EJJ A;  2DV4 A;  2EMR A;  2DV3 A;  2DXW A;  2EH2 A;  2EKA A;  2E07 A; 
#chains in the Genus database with same CATH topology
 3UTC A;  3F7T A;  2OWV A;  2P5C A;  2DSH A;  2EGB A;  2ELE A;  3FQ6 A;  1PJT A;  2E17 A;  2EK7 A;  2DEK A;  2DV7 A;  4MV0 A;  1VHV A;  3TIX B;  1S4D A;  2EH4 A;  3I4T A;  2PCG A;  2OWU A;  2ZVC A;  2ED3 A;  2P6L A;  2EL3 A;  1CBF A;  2DSI A;  2PCI A;  2EJZ A;  3KEL A;  3ZGL A;  2P5F A;  2ED5 A;  3NEI A;  2DXV A;  3UV3 A;  2E8H A;  2PCK A;  2E15 A;  3T0F A;  2NPN A;  2E8Q A;  1VE2 A;  2E4R A;  3FFY A;  4EB3 A;  3SZU A;  3HH1 A;  2BB3 A;  3UV7 A;  4MUY A;  4H4E A;  2E0N A;  3KWP A;  2EGS A;  2ZVB A;  2E8S A;  2PCM A;  2EEQ A;  1WYZ A;  2HUQ A;  2HUX A;  4MUX A;  2YBQ A;  3ND1 A;  2E7R A;  2EK2 A;  2EMU A;  2HUV A;  2DSG A;  2YBO A;  3LMM A;  2PCA A;  3UWM A;  2ELD A;  2EHL A;  2PB5 A;  1WDE A;  4N7B A;  3UTD A;  2EHC A;  4MV5 A;  2PB4 A;  2PB6 A;  2CBF A;  2OWG A;  3SZO A;  2P6D A;  2QBU A;  3NUT A;  2OWK A;  3KEM A;  2EK3 A;  2ENI A;  2EGL A;  2PCH A;  3T0G A;  2EN5 A;  2HUT A;  2Z6R A;  2E08 A;  4E16 A;  2EL1 A;  3DNF A;  5HW4 A;  3KEF A;  2DV5 A;  3KE8 A;  4H4C A;  1WNG A;  2E0K A;  2KYY A;  4H4D A;  2P9D A;  2EH5 A;  3NDC A;  2EL0 A;  2EK4 A;  2P6I A;  2E4N A;  2HR8 A;  1VCE A;  2DXX A;  2P2X A;  2P6K A;  3ZGN A;  2E16 A;  2EJK A;  1PJS A;  3SZL A;  2EL2 A;  1V9A A;  3URK A;  1PJQ A;  1VA0 A;  2E8R A;  2OWF A;  2EJJ A;  2DV4 A;  2EMR A;  3UV6 A;  2DV3 A;  3KE9 A;  2DXW A;  2EH2 A;  2EKA A;  2E07 A; 
#chains in the Genus database with same CATH homology
 3UTC A;  3F7T A;  2OWV A;  2P5C A;  2DSH A;  2EGB A;  2ELE A;  3FQ6 A;  1PJT A;  2E17 A;  2EK7 A;  2DEK A;  2DV7 A;  4MV0 A;  1VHV A;  3TIX B;  1S4D A;  2EH4 A;  3I4T A;  2PCG A;  2OWU A;  2ZVC A;  2ED3 A;  2P6L A;  2EL3 A;  1CBF A;  2DSI A;  2PCI A;  2EJZ A;  3KEL A;  3ZGL A;  2P5F A;  2ED5 A;  3NEI A;  2DXV A;  3UV3 A;  2E8H A;  2PCK A;  2E15 A;  3T0F A;  2NPN A;  2E8Q A;  1VE2 A;  2E4R A;  3FFY A;  4EB3 A;  3SZU A;  3HH1 A;  2BB3 A;  3UV7 A;  4MUY A;  4H4E A;  2E0N A;  3KWP A;  2EGS A;  2ZVB A;  2E8S A;  2PCM A;  2EEQ A;  1WYZ A;  2HUQ A;  2HUX A;  4MUX A;  2YBQ A;  3ND1 A;  2E7R A;  2EK2 A;  2EMU A;  2HUV A;  2DSG A;  2YBO A;  3LMM A;  2PCA A;  3UWM A;  2ELD A;  2EHL A;  2PB5 A;  1WDE A;  4N7B A;  3UTD A;  2EHC A;  4MV5 A;  2PB4 A;  2PB6 A;  2CBF A;  2OWG A;  3SZO A;  2P6D A;  2QBU A;  3NUT A;  2OWK A;  3KEM A;  2EK3 A;  2ENI A;  2EGL A;  2PCH A;  3T0G A;  2EN5 A;  2HUT A;  2Z6R A;  2E08 A;  4E16 A;  2EL1 A;  3DNF A;  5HW4 A;  3KEF A;  2DV5 A;  3KE8 A;  4H4C A;  1WNG A;  2E0K A;  2KYY A;  4H4D A;  2P9D A;  2EH5 A;  3NDC A;  2EL0 A;  2EK4 A;  2P6I A;  2E4N A;  2HR8 A;  1VCE A;  2DXX A;  2P2X A;  2P6K A;  3ZGN A;  2E16 A;  2EJK A;  1PJS A;  3SZL A;  2EL2 A;  1V9A A;  3URK A;  1PJQ A;  1VA0 A;  2E8R A;  2OWF A;  2EJJ A;  2DV4 A;  2EMR A;  3UV6 A;  2DV3 A;  3KE9 A;  2DXW A;  2EH2 A;  2EKA A;  2E07 A; 
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