2P5FA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSMTVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-7)TI1 (12-15)TI3 (39-42)S4 (79-84)TVIII1 (27-30)AH4 (94-104)S2 (29-33)TIV2 (84-87)TIV3 (85-88)TIV4 (89-92)S5 (107-111)3H1 (120-123)AH9 (244-254)3H2 (127-129)S6 (130-136)S7 (161-166)AH6 (147-158)TII'1 (140-143)AH7 (178-192)3H3 (170-172)S8 (168-169)S9 (174-175)S12 (234-238)AH8 (221-225)TII1 (208-211)TIV5 (206-209)S11 (215-220)3H4 (258-261)AH1 (18-26)TIV1 (34-37)TI4 (87-90)AH5 (116-119)TI5 (198-201)TVIII2 (195-198)S10 (202-207)S3 (56-58)AH2 (44-51)AH3 (60-76)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
molecule keywords diphthine synthase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p5fA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p5fA01
2OWGA 2E15A 2EH5A 2PB6A 2CBFA 2DSHA 2P6LA 2E8HA 2PCGA 2E8RA 4E16A 2OWVA 1PJQA 3ND1A 3NUTA 2EJZA 1WNGA 2EH2A 2PCAA 2DXWA 2E7RA 2ED3A 2EK3A 2EHCA 2E8QA 2EMRA 2HUTA 2P2XA 2P6KA 3FQ6A 2EHLA 3NEIA 2EJKA 2EK7A 2E0KA 3NDCA 2EL1A 2EL3A 1VE2A 2P5CA 2P6DA 2PCMA 2HR8A 2DV7A 2QBUA 2EL2A 1WYZA 2EEQA 2YBQA 2E07A 2HUQA 2P9DA 2OWUA 2E16A 2E8SA 2EGLA 2PCIA 2ELEA 2YBOA 1VA0A 2EL0A 2ENIA 2DXVA 1VHVA 5HW4A 2PCKA 2HUVA 3I4TA 2DSIA 2EK2A 2DXXA 2OWKA 2EN5A 3FFYA 2E0NA 2E17A 2DEKA 2P5FA 2PB4A 1PJTA 2PCHA 2EGSA 2E4RA 1VCEA 2E08A 2EMUA 2EK4A 2NPNA 2EKAA 2EJJA 2BB3A 2ELDA 2EGBA 2P6IA 2ZVBA 1WDEA 2PB5A 2E4NA 2DV3A 2DV5A 2Z6RA 2EH4A 2ZVCA 1PJSA 1S4DA 2ED5A 2OWFA 2DV4A 3KWPA 2HUXA 1CBFA 3HH1A 1V9AA 2DSGA
chains in the Genus database with same CATH superfamily
2OWGA 3T0FA 2E15A 2EH5A 2PB6A 2CBFA 2KYYA 2DSHA 4H4DA 2P6LA 2E8HA 2PCGA 3KELA 4MUYA 2E8RA 4E16A 2OWVA 3T0GA 1PJQA 3ND1A 3NUTA 2EJZA 1WNGA 2EH2A 2PCAA 3F7TA 2DXWA 3ZGNA 4MV0A 2E7RA 3KEFA 2ED3A 2EK3A 2EHCA 2E8QA 2EMRA 4N7BA 2HUTA 2P2XA 2P6KA 3FQ6A 2EHLA 3NEIA 2EJKA 2EK7A 2E0KA 3NDCA 2EL1A 2EL3A 1VE2A 2P5CA 2P6DA 2PCMA 2HR8A 2DV7A 2QBUA 2EL2A 1WYZA 2EEQA 2YBQA 2E07A 3KEMA 2HUQA 2P9DA 2OWUA 2E16A 2E8SA 3KE9A 2EGLA 3SZOA 2PCIA 2ELEA 2YBOA 1VA0A 2EL0A 2ENIA 2DXVA 1VHVA 5HW4A 2PCKA 2HUVA 3I4TA 2DSIA 2EK2A 3UV7A 2DXXA 2OWKA 3TIXB 2EN5A 4H4CA 3FFYA 2E0NA 2E17A 2DEKA 2P5FA 3UWMA 2PB4A 1PJTA 2PCHA 2EGSA 2E4RA 1VCEA 2E08A 2EMUA 3UV3A 3SZLA 2EK4A 2NPNA 2EKAA 2EJJA 2BB3A 4EB3A 2ELDA 2EGBA 3DNFA 2P6IA 2ZVBA 4MV5A 1WDEA 2PB5A 2E4NA 2DV3A 2DV5A 4H4EA 2Z6RA 3ZGLA 2EH4A 2ZVCA 3LMMA 3UTDA 1PJSA 1S4DA 2ED5A 2OWFA 2DV4A 3KWPA 2HUXA 1CBFA 4MUXA 3HH1A 1V9AA 3URKA 3UV6A 2DSGA 3SZUA 3KE8A 3UTCA
chains in the Genus database with same CATH topology
2OWGA 3T0FA 2E15A 2EH5A 2PB6A 2CBFA 2KYYA 2DSHA 4H4DA 2P6LA 2E8HA 2PCGA 3KELA 4MUYA 2E8RA 4E16A 2OWVA 3T0GA 1PJQA 3ND1A 3NUTA 2EJZA 1WNGA 2EH2A 2PCAA 3F7TA 2DXWA 3ZGNA 4MV0A 2E7RA 3KEFA 2ED3A 2EK3A 2EHCA 2E8QA 2EMRA 4N7BA 2HUTA 2P2XA 2P6KA 3FQ6A 2EHLA 3NEIA 2EJKA 2EK7A 2E0KA 3NDCA 2EL1A 2EL3A 1VE2A 2P5CA 2P6DA 2PCMA 2HR8A 2DV7A 2QBUA 2EL2A 1WYZA 2EEQA 2YBQA 2E07A 3KEMA 2HUQA 2P9DA 2OWUA 2E16A 2E8SA 3KE9A 2EGLA 3SZOA 2PCIA 2ELEA 2YBOA 1VA0A 2EL0A 2ENIA 2DXVA 1VHVA 5HW4A 2PCKA 2HUVA 3I4TA 2DSIA 2EK2A 3UV7A 2DXXA 2OWKA 3TIXB 2EN5A 4H4CA 3FFYA 2E0NA 2E17A 2DEKA 2P5FA 3UWMA 2PB4A 1PJTA 2PCHA 2EGSA 2E4RA 1VCEA 2E08A 2EMUA 3UV3A 3SZLA 2EK4A 2NPNA 2EKAA 2EJJA 2BB3A 4EB3A 2ELDA 2EGBA 3DNFA 2P6IA 2ZVBA 4MV5A 1WDEA 2PB5A 2E4NA 2DV3A 2DV5A 4H4EA 2Z6RA 3ZGLA 2EH4A 2ZVCA 3LMMA 3UTDA 1PJSA 1S4DA 2ED5A 2OWFA 2DV4A 3KWPA 2HUXA 1CBFA 4MUXA 3HH1A 1V9AA 3URKA 3UV6A 2DSGA 3SZUA 3KE8A 3UTCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OWG A;  2E15 A;  2EH5 A;  2PB6 A;  2CBF A;  2DSH A;  2P6L A;  2E8H A;  2PCG A;  2E8R A;  4E16 A;  2OWV A;  1PJQ A;  3ND1 A;  3NUT A;  2EJZ A;  1WNG A;  2EH2 A;  2PCA A;  2DXW A;  2E7R A;  2ED3 A;  2EK3 A;  2EHC A;  2E8Q A;  2EMR A;  2HUT A;  2P2X A;  2P6K A;  3FQ6 A;  2EHL A;  3NEI A;  2EJK A;  2EK7 A;  2E0K A;  3NDC A;  2EL1 A;  2EL3 A;  1VE2 A;  2P5C A;  2P6D A;  2PCM A;  2HR8 A;  2DV7 A;  2QBU A;  2EL2 A;  1WYZ A;  2EEQ A;  2YBQ A;  2E07 A;  2HUQ A;  2P9D A;  2OWU A;  2E16 A;  2E8S A;  2EGL A;  2PCI A;  2ELE A;  2YBO A;  1VA0 A;  2EL0 A;  2ENI A;  2DXV A;  1VHV A;  5HW4 A;  2PCK A;  2HUV A;  3I4T A;  2DSI A;  2EK2 A;  2DXX A;  2OWK A;  2EN5 A;  3FFY A;  2E0N A;  2E17 A;  2DEK A;  2P5F A;  2PB4 A;  1PJT A;  2PCH A;  2EGS A;  2E4R A;  1VCE A;  2E08 A;  2EMU A;  2EK4 A;  2NPN A;  2EKA A;  2EJJ A;  2BB3 A;  2ELD A;  2EGB A;  2P6I A;  2ZVB A;  1WDE A;  2PB5 A;  2E4N A;  2DV3 A;  2DV5 A;  2Z6R A;  2EH4 A;  2ZVC A;  1PJS A;  1S4D A;  2ED5 A;  2OWF A;  2DV4 A;  3KWP A;  2HUX A;  1CBF A;  3HH1 A;  1V9A A;  2DSG A; 
#chains in the Genus database with same CATH topology
 2OWG A;  3T0F A;  2E15 A;  2EH5 A;  2PB6 A;  2CBF A;  2KYY A;  2DSH A;  4H4D A;  2P6L A;  2E8H A;  2PCG A;  3KEL A;  4MUY A;  2E8R A;  4E16 A;  2OWV A;  3T0G A;  1PJQ A;  3ND1 A;  3NUT A;  2EJZ A;  1WNG A;  2EH2 A;  2PCA A;  3F7T A;  2DXW A;  3ZGN A;  4MV0 A;  2E7R A;  3KEF A;  2ED3 A;  2EK3 A;  2EHC A;  2E8Q A;  2EMR A;  4N7B A;  2HUT A;  2P2X A;  2P6K A;  3FQ6 A;  2EHL A;  3NEI A;  2EJK A;  2EK7 A;  2E0K A;  3NDC A;  2EL1 A;  2EL3 A;  1VE2 A;  2P5C A;  2P6D A;  2PCM A;  2HR8 A;  2DV7 A;  2QBU A;  2EL2 A;  1WYZ A;  2EEQ A;  2YBQ A;  2E07 A;  3KEM A;  2HUQ A;  2P9D A;  2OWU A;  2E16 A;  2E8S A;  3KE9 A;  2EGL A;  3SZO A;  2PCI A;  2ELE A;  2YBO A;  1VA0 A;  2EL0 A;  2ENI A;  2DXV A;  1VHV A;  5HW4 A;  2PCK A;  2HUV A;  3I4T A;  2DSI A;  2EK2 A;  3UV7 A;  2DXX A;  2OWK A;  3TIX B;  2EN5 A;  4H4C A;  3FFY A;  2E0N A;  2E17 A;  2DEK A;  2P5F A;  3UWM A;  2PB4 A;  1PJT A;  2PCH A;  2EGS A;  2E4R A;  1VCE A;  2E08 A;  2EMU A;  3UV3 A;  3SZL A;  2EK4 A;  2NPN A;  2EKA A;  2EJJ A;  2BB3 A;  4EB3 A;  2ELD A;  2EGB A;  3DNF A;  2P6I A;  2ZVB A;  4MV5 A;  1WDE A;  2PB5 A;  2E4N A;  2DV3 A;  2DV5 A;  4H4E A;  2Z6R A;  3ZGL A;  2EH4 A;  2ZVC A;  3LMM A;  3UTD A;  1PJS A;  1S4D A;  2ED5 A;  2OWF A;  2DV4 A;  3KWP A;  2HUX A;  1CBF A;  4MUX A;  3HH1 A;  1V9A A;  3URK A;  3UV6 A;  2DSG A;  3SZU A;  3KE8 A;  3UTC A; 
#chains in the Genus database with same CATH homology
 2OWG A;  3T0F A;  2E15 A;  2EH5 A;  2PB6 A;  2CBF A;  2KYY A;  2DSH A;  4H4D A;  2P6L A;  2E8H A;  2PCG A;  3KEL A;  4MUY A;  2E8R A;  4E16 A;  2OWV A;  3T0G A;  1PJQ A;  3ND1 A;  3NUT A;  2EJZ A;  1WNG A;  2EH2 A;  2PCA A;  3F7T A;  2DXW A;  3ZGN A;  4MV0 A;  2E7R A;  3KEF A;  2ED3 A;  2EK3 A;  2EHC A;  2E8Q A;  2EMR A;  4N7B A;  2HUT A;  2P2X A;  2P6K A;  3FQ6 A;  2EHL A;  3NEI A;  2EJK A;  2EK7 A;  2E0K A;  3NDC A;  2EL1 A;  2EL3 A;  1VE2 A;  2P5C A;  2P6D A;  2PCM A;  2HR8 A;  2DV7 A;  2QBU A;  2EL2 A;  1WYZ A;  2EEQ A;  2YBQ A;  2E07 A;  3KEM A;  2HUQ A;  2P9D A;  2OWU A;  2E16 A;  2E8S A;  3KE9 A;  2EGL A;  3SZO A;  2PCI A;  2ELE A;  2YBO A;  1VA0 A;  2EL0 A;  2ENI A;  2DXV A;  1VHV A;  5HW4 A;  2PCK A;  2HUV A;  3I4T A;  2DSI A;  2EK2 A;  3UV7 A;  2DXX A;  2OWK A;  3TIX B;  2EN5 A;  4H4C A;  3FFY A;  2E0N A;  2E17 A;  2DEK A;  2P5F A;  3UWM A;  2PB4 A;  1PJT A;  2PCH A;  2EGS A;  2E4R A;  1VCE A;  2E08 A;  2EMU A;  3UV3 A;  3SZL A;  2EK4 A;  2NPN A;  2EKA A;  2EJJ A;  2BB3 A;  4EB3 A;  2ELD A;  2EGB A;  3DNF A;  2P6I A;  2ZVB A;  4MV5 A;  1WDE A;  2PB5 A;  2E4N A;  2DV3 A;  2DV5 A;  4H4E A;  2Z6R A;  3ZGL A;  2EH4 A;  2ZVC A;  3LMM A;  3UTD A;  1PJS A;  1S4D A;  2ED5 A;  2OWF A;  2DV4 A;  3KWP A;  2HUX A;  1CBF A;  4MUX A;  3HH1 A;  1V9A A;  3URK A;  3UV6 A;  2DSG A;  3SZU A;  3KE8 A;  3UTC A; 
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