2P9DA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVMSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-7)S4 (79-84)TI1 (12-15)TI3 (39-42)TVIII1 (27-30)AH4 (94-104)S2 (29-33)S3 (56-58)AH3 (60-76)TIV2 (85-88)TIV3 (89-92)S5 (107-111)3H1 (120-123)AH9 (244-254)3H2 (127-129)S6 (130-136)S7 (161-166)AH6 (146-158)TII'1 (140-143)AH7 (178-192)S8 (168-169)3H3 (170-172)S9 (174-175)S12 (234-238)AH8 (221-225)TII1 (208-211)TIV4 (206-209)S11 (215-220)3H4 (258-261)AH1 (18-26)TIV1 (34-37)TI4 (87-90)AH5 (116-119)TI5 (198-201)TVIII2 (195-198)S10 (202-207)AH2 (44-51)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
molecule keywords diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p9dA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p9dA01
2EGSA 2DSIA 2DV5A 2HUTA 4E16A 1WDEA 3NUTA 2PB6A 2OWKA 2E8SA 2PCAA 2EEQA 2OWUA 2PCKA 2E4RA 2E8HA 1CBFA 2HUVA 2P6DA 2EK4A 2E07A 2HR8A 2EKAA 1PJSA 2E8RA 2EGLA 5HW4A 2EJJA 2CBFA 2DEKA 2E15A 2P2XA 1WNGA 2NPNA 2E17A 3I4TA 3NEIA 2BB3A 2ELEA 2EL3A 2ZVCA 2DXWA 2OWGA 2YBQA 2PCHA 3FFYA 2P5CA 2EMUA 2DV3A 1S4DA 2YBOA 2E0KA 1VHVA 1PJTA 2DV4A 2E08A 1WYZA 2EL2A 3ND1A 2PCMA 2EH2A 2EK7A 2EMRA 2DXXA 2P6KA 2EHCA 2QBUA 2OWVA 2HUQA 3HH1A 2E4NA 2PCIA 2PB5A 2DSHA 2ED3A 3FQ6A 2ELDA 1VCEA 1V9AA 2EH4A 2P9DA 2P6LA 2EJKA 2EL1A 2ZVBA 2DXVA 2HUXA 2E16A 2E7RA 2P6IA 1VA0A 2EL0A 2EK3A 2EN5A 2PCGA 2E0NA 2P5FA 2PB4A 1PJQA 2ENIA 3KWPA 2EJZA 2Z6RA 2EK2A 2EH5A 1VE2A 3NDCA 2EHLA 2EGBA 2OWFA 2ED5A 2DV7A 2DSGA 2E8QA
chains in the Genus database with same CATH superfamily
4MUYA 3UTCA 2EGSA 2DSIA 2DV5A 2HUTA 4E16A 1WDEA 4H4DA 3NUTA 2PB6A 2OWKA 2KYYA 2E8SA 2PCAA 3UWMA 2EEQA 2OWUA 4MUXA 3KELA 2PCKA 2E4RA 2E8HA 3KE8A 1CBFA 2HUVA 2P6DA 2EK4A 2E07A 3KEMA 2HR8A 2EKAA 1PJSA 3F7TA 2E8RA 2EGLA 5HW4A 2EJJA 4H4CA 2CBFA 2DEKA 2E15A 2P2XA 1WNGA 2NPNA 3T0FA 2E17A 3I4TA 3NEIA 3SZLA 2BB3A 2ELEA 4MV5A 2EL3A 2ZVCA 2DXWA 2OWGA 2YBQA 3KE9A 3DNFA 2PCHA 3FFYA 2P5CA 2EMUA 2DV3A 1S4DA 2YBOA 2E0KA 1VHVA 1PJTA 4EB3A 2DV4A 2E08A 1WYZA 3SZOA 2EL2A 3LMMA 3ND1A 2PCMA 2EH2A 4H4EA 2EK7A 2EMRA 3TIXB 2DXXA 2P6KA 2EHCA 2QBUA 2OWVA 2HUQA 3HH1A 3T0GA 2E4NA 2PCIA 3UV6A 3UV7A 2PB5A 2DSHA 2ED3A 3FQ6A 2ELDA 1VCEA 1V9AA 2EH4A 2P9DA 2P6LA 2EJKA 2EL1A 2ZVBA 2DXVA 2HUXA 2E16A 2E7RA 2P6IA 3UV3A 1VA0A 2EL0A 2EK3A 2EN5A 2PCGA 2E0NA 2P5FA 3KEFA 2PB4A 3ZGLA 1PJQA 2ENIA 3KWPA 3URKA 2EJZA 2Z6RA 2EK2A 3UTDA 3ZGNA 2EH5A 4MV0A 1VE2A 3NDCA 2EHLA 2EGBA 2OWFA 2ED5A 2DV7A 4N7BA 3SZUA 2DSGA 2E8QA
chains in the Genus database with same CATH topology
4MUYA 3UTCA 2EGSA 2DSIA 2DV5A 2HUTA 4E16A 1WDEA 4H4DA 3NUTA 2PB6A 2OWKA 2KYYA 2E8SA 2PCAA 3UWMA 2EEQA 2OWUA 4MUXA 3KELA 2PCKA 2E4RA 2E8HA 3KE8A 1CBFA 2HUVA 2P6DA 2EK4A 2E07A 3KEMA 2HR8A 2EKAA 1PJSA 3F7TA 2E8RA 2EGLA 5HW4A 2EJJA 4H4CA 2CBFA 2DEKA 2E15A 2P2XA 1WNGA 2NPNA 3T0FA 2E17A 3I4TA 3NEIA 3SZLA 2BB3A 2ELEA 4MV5A 2EL3A 2ZVCA 2DXWA 2OWGA 2YBQA 3KE9A 3DNFA 2PCHA 3FFYA 2P5CA 2EMUA 2DV3A 1S4DA 2YBOA 2E0KA 1VHVA 1PJTA 4EB3A 2DV4A 2E08A 1WYZA 3SZOA 2EL2A 3LMMA 3ND1A 2PCMA 2EH2A 4H4EA 2EK7A 2EMRA 3TIXB 2DXXA 2P6KA 2EHCA 2QBUA 2OWVA 2HUQA 3HH1A 3T0GA 2E4NA 2PCIA 3UV6A 3UV7A 2PB5A 2DSHA 2ED3A 3FQ6A 2ELDA 1VCEA 1V9AA 2EH4A 2P9DA 2P6LA 2EJKA 2EL1A 2ZVBA 2DXVA 2HUXA 2E16A 2E7RA 2P6IA 3UV3A 1VA0A 2EL0A 2EK3A 2EN5A 2PCGA 2E0NA 2P5FA 3KEFA 2PB4A 3ZGLA 1PJQA 2ENIA 3KWPA 3URKA 2EJZA 2Z6RA 2EK2A 3UTDA 3ZGNA 2EH5A 4MV0A 1VE2A 3NDCA 2EHLA 2EGBA 2OWFA 2ED5A 2DV7A 4N7BA 3SZUA 2DSGA 2E8QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EGS A;  2DSI A;  2DV5 A;  2HUT A;  4E16 A;  1WDE A;  3NUT A;  2PB6 A;  2OWK A;  2E8S A;  2PCA A;  2EEQ A;  2OWU A;  2PCK A;  2E4R A;  2E8H A;  1CBF A;  2HUV A;  2P6D A;  2EK4 A;  2E07 A;  2HR8 A;  2EKA A;  1PJS A;  2E8R A;  2EGL A;  5HW4 A;  2EJJ A;  2CBF A;  2DEK A;  2E15 A;  2P2X A;  1WNG A;  2NPN A;  2E17 A;  3I4T A;  3NEI A;  2BB3 A;  2ELE A;  2EL3 A;  2ZVC A;  2DXW A;  2OWG A;  2YBQ A;  2PCH A;  3FFY A;  2P5C A;  2EMU A;  2DV3 A;  1S4D A;  2YBO A;  2E0K A;  1VHV A;  1PJT A;  2DV4 A;  2E08 A;  1WYZ A;  2EL2 A;  3ND1 A;  2PCM A;  2EH2 A;  2EK7 A;  2EMR A;  2DXX A;  2P6K A;  2EHC A;  2QBU A;  2OWV A;  2HUQ A;  3HH1 A;  2E4N A;  2PCI A;  2PB5 A;  2DSH A;  2ED3 A;  3FQ6 A;  2ELD A;  1VCE A;  1V9A A;  2EH4 A;  2P9D A;  2P6L A;  2EJK A;  2EL1 A;  2ZVB A;  2DXV A;  2HUX A;  2E16 A;  2E7R A;  2P6I A;  1VA0 A;  2EL0 A;  2EK3 A;  2EN5 A;  2PCG A;  2E0N A;  2P5F A;  2PB4 A;  1PJQ A;  2ENI A;  3KWP A;  2EJZ A;  2Z6R A;  2EK2 A;  2EH5 A;  1VE2 A;  3NDC A;  2EHL A;  2EGB A;  2OWF A;  2ED5 A;  2DV7 A;  2DSG A;  2E8Q A; 
#chains in the Genus database with same CATH topology
 4MUY A;  3UTC A;  2EGS A;  2DSI A;  2DV5 A;  2HUT A;  4E16 A;  1WDE A;  4H4D A;  3NUT A;  2PB6 A;  2OWK A;  2KYY A;  2E8S A;  2PCA A;  3UWM A;  2EEQ A;  2OWU A;  4MUX A;  3KEL A;  2PCK A;  2E4R A;  2E8H A;  3KE8 A;  1CBF A;  2HUV A;  2P6D A;  2EK4 A;  2E07 A;  3KEM A;  2HR8 A;  2EKA A;  1PJS A;  3F7T A;  2E8R A;  2EGL A;  5HW4 A;  2EJJ A;  4H4C A;  2CBF A;  2DEK A;  2E15 A;  2P2X A;  1WNG A;  2NPN A;  3T0F A;  2E17 A;  3I4T A;  3NEI A;  3SZL A;  2BB3 A;  2ELE A;  4MV5 A;  2EL3 A;  2ZVC A;  2DXW A;  2OWG A;  2YBQ A;  3KE9 A;  3DNF A;  2PCH A;  3FFY A;  2P5C A;  2EMU A;  2DV3 A;  1S4D A;  2YBO A;  2E0K A;  1VHV A;  1PJT A;  4EB3 A;  2DV4 A;  2E08 A;  1WYZ A;  3SZO A;  2EL2 A;  3LMM A;  3ND1 A;  2PCM A;  2EH2 A;  4H4E A;  2EK7 A;  2EMR A;  3TIX B;  2DXX A;  2P6K A;  2EHC A;  2QBU A;  2OWV A;  2HUQ A;  3HH1 A;  3T0G A;  2E4N A;  2PCI A;  3UV6 A;  3UV7 A;  2PB5 A;  2DSH A;  2ED3 A;  3FQ6 A;  2ELD A;  1VCE A;  1V9A A;  2EH4 A;  2P9D A;  2P6L A;  2EJK A;  2EL1 A;  2ZVB A;  2DXV A;  2HUX A;  2E16 A;  2E7R A;  2P6I A;  3UV3 A;  1VA0 A;  2EL0 A;  2EK3 A;  2EN5 A;  2PCG A;  2E0N A;  2P5F A;  3KEF A;  2PB4 A;  3ZGL A;  1PJQ A;  2ENI A;  3KWP A;  3URK A;  2EJZ A;  2Z6R A;  2EK2 A;  3UTD A;  3ZGN A;  2EH5 A;  4MV0 A;  1VE2 A;  3NDC A;  2EHL A;  2EGB A;  2OWF A;  2ED5 A;  2DV7 A;  4N7B A;  3SZU A;  2DSG A;  2E8Q A; 
#chains in the Genus database with same CATH homology
 4MUY A;  3UTC A;  2EGS A;  2DSI A;  2DV5 A;  2HUT A;  4E16 A;  1WDE A;  4H4D A;  3NUT A;  2PB6 A;  2OWK A;  2KYY A;  2E8S A;  2PCA A;  3UWM A;  2EEQ A;  2OWU A;  4MUX A;  3KEL A;  2PCK A;  2E4R A;  2E8H A;  3KE8 A;  1CBF A;  2HUV A;  2P6D A;  2EK4 A;  2E07 A;  3KEM A;  2HR8 A;  2EKA A;  1PJS A;  3F7T A;  2E8R A;  2EGL A;  5HW4 A;  2EJJ A;  4H4C A;  2CBF A;  2DEK A;  2E15 A;  2P2X A;  1WNG A;  2NPN A;  3T0F A;  2E17 A;  3I4T A;  3NEI A;  3SZL A;  2BB3 A;  2ELE A;  4MV5 A;  2EL3 A;  2ZVC A;  2DXW A;  2OWG A;  2YBQ A;  3KE9 A;  3DNF A;  2PCH A;  3FFY A;  2P5C A;  2EMU A;  2DV3 A;  1S4D A;  2YBO A;  2E0K A;  1VHV A;  1PJT A;  4EB3 A;  2DV4 A;  2E08 A;  1WYZ A;  3SZO A;  2EL2 A;  3LMM A;  3ND1 A;  2PCM A;  2EH2 A;  4H4E A;  2EK7 A;  2EMR A;  3TIX B;  2DXX A;  2P6K A;  2EHC A;  2QBU A;  2OWV A;  2HUQ A;  3HH1 A;  3T0G A;  2E4N A;  2PCI A;  3UV6 A;  3UV7 A;  2PB5 A;  2DSH A;  2ED3 A;  3FQ6 A;  2ELD A;  1VCE A;  1V9A A;  2EH4 A;  2P9D A;  2P6L A;  2EJK A;  2EL1 A;  2ZVB A;  2DXV A;  2HUX A;  2E16 A;  2E7R A;  2P6I A;  3UV3 A;  1VA0 A;  2EL0 A;  2EK3 A;  2EN5 A;  2PCG A;  2E0N A;  2P5F A;  3KEF A;  2PB4 A;  3ZGL A;  1PJQ A;  2ENI A;  3KWP A;  3URK A;  2EJZ A;  2Z6R A;  2EK2 A;  3UTD A;  3ZGN A;  2EH5 A;  4MV0 A;  1VE2 A;  3NDC A;  2EHL A;  2EGB A;  2OWF A;  2ED5 A;  2DV7 A;  4N7B A;  3SZU A;  2DSG A;  2E8Q A; 
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similar chains in the Genus database (?% sequence similarity)
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