2PB5A

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 86

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPMAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-7)S4 (80-84)TIV1 (9-12)TIV3 (84-87)TI3 (39-42)TI1 (12-15)S2 (29-33)AH4 (94-104)3H1 (72-74)TI4 (74-77)TI5 (75-78)TIV4 (85-88)TIV5 (89-92)S5 (107-111)3H2 (120-123)AH9 (244-254)3H3 (127-129)S6 (130-136)S7 (161-166)AH6 (147-158)TII'1 (140-143)AH7 (178-192)S8 (168-169)3H4 (170-172)S9 (174-175)S12 (234-238)AH8 (221-225)TII1 (208-211)TIV6 (206-209)S11 (215-220)3H5 (258-261)AH1 (18-26)TVIII1 (27-30)TIV2 (34-37)AH3 (60-71)TI6 (87-90)AH5 (116-119)TI7 (198-201)TVIII2 (195-198)S10 (202-207)S3 (56-58)AH2 (44-51)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
molecule keywords diphthine synthase
total genus 86
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pb5A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pb5A01
2PB5A 2OWFA 2EH4A 2EHCA 2P6IA 2ZVBA 2PB4A 2P6KA 2HUTA 2EKAA 2OWUA 2DEKA 2DV3A 2OWKA 2OWVA 2PCMA 3NUTA 1VHVA 2EJJA 2QBUA 2EGLA 2EH5A 2E07A 1S4DA 2PCAA 2EMUA 1WDEA 2E08A 1WYZA 2HUQA 2EL1A 2E15A 2EK7A 3HH1A 2EJZA 2PCIA 2YBOA 1VE2A 2NPNA 2CBFA 2E17A 2EK2A 2PCGA 2EGBA 2P6DA 2OWGA 2Z6RA 4E16A 2DSIA 1V9AA 2E4RA 2YBQA 2E16A 2E8HA 2DSGA 3NDCA 2HUVA 2HR8A 2DXVA 2P5FA 2EHLA 3FFYA 2EJKA 2ELEA 2EGSA 2EEQA 2EN5A 3FQ6A 2E4NA 2DSHA 2E8RA 1WNGA 1VA0A 2DXXA 2ED3A 2EL3A 1CBFA 2P9DA 2ZVCA 2EK4A 2PB6A 2EK3A 2ED5A 2E8QA 3KWPA 1PJTA 2EH2A 2EL0A 2ELDA 5HW4A 3ND1A 2DV4A 2PCHA 2DXWA 2E8SA 2BB3A 2HUXA 2EL2A 2E7RA 2P5CA 1PJQA 2EMRA 1PJSA 2DV7A 2E0NA 1VCEA 2ENIA 2PCKA 3I4TA 2E0KA 2DV5A 2P6LA 3NEIA 2P2XA
chains in the Genus database with same CATH superfamily
2PB5A 2OWFA 3DNFA 3URKA 2EH4A 2EHCA 3ZGNA 2P6IA 2ZVBA 2PB4A 2P6KA 2HUTA 2EKAA 2OWUA 2DEKA 2DV3A 3UWMA 2OWKA 2OWVA 2PCMA 3NUTA 1VHVA 2EJJA 2QBUA 2EGLA 3KEFA 2EH5A 2E07A 1S4DA 2PCAA 2EMUA 4H4EA 1WDEA 2E08A 1WYZA 2HUQA 2EL1A 2E15A 2EK7A 3HH1A 4N7BA 3UTCA 2EJZA 2PCIA 4MV0A 2YBOA 1VE2A 2NPNA 2CBFA 3ZGLA 2E17A 2EK2A 2PCGA 2EGBA 2P6DA 2OWGA 2Z6RA 4E16A 2DSIA 1V9AA 2E4RA 3LMMA 2YBQA 2E16A 2E8HA 2DSGA 3KE8A 3NDCA 2HUVA 2HR8A 4MUXA 3UTDA 2DXVA 2P5FA 2EHLA 3UV3A 3FFYA 2EJKA 2ELEA 2EGSA 2EEQA 2EN5A 3FQ6A 2E4NA 2DSHA 3SZLA 2E8RA 1WNGA 1VA0A 2DXXA 2ED3A 2EL3A 1CBFA 4H4CA 2P9DA 2ZVCA 4EB3A 2EK4A 2PB6A 2EK3A 2ED5A 3SZOA 2E8QA 3KWPA 1PJTA 2EH2A 2EL0A 3TIXB 4H4DA 3UV6A 3T0GA 2ELDA 5HW4A 3SZUA 4MUYA 3ND1A 2DV4A 2PCHA 2DXWA 3F7TA 2E8SA 3T0FA 2BB3A 2HUXA 2EL2A 3KEMA 2E7RA 2P5CA 1PJQA 2EMRA 1PJSA 2DV7A 2E0NA 3KELA 1VCEA 2ENIA 4MV5A 2KYYA 2PCKA 3I4TA 2E0KA 2DV5A 2P6LA 3NEIA 3KE9A 3UV7A 2P2XA
chains in the Genus database with same CATH topology
2PB5A 2OWFA 3DNFA 3URKA 2EH4A 2EHCA 3ZGNA 2P6IA 2ZVBA 2PB4A 2P6KA 2HUTA 2EKAA 2OWUA 2DEKA 2DV3A 3UWMA 2OWKA 2OWVA 2PCMA 3NUTA 1VHVA 2EJJA 2QBUA 2EGLA 3KEFA 2EH5A 2E07A 1S4DA 2PCAA 2EMUA 4H4EA 1WDEA 2E08A 1WYZA 2HUQA 2EL1A 2E15A 2EK7A 3HH1A 4N7BA 3UTCA 2EJZA 2PCIA 4MV0A 2YBOA 1VE2A 2NPNA 2CBFA 3ZGLA 2E17A 2EK2A 2PCGA 2EGBA 2P6DA 2OWGA 2Z6RA 4E16A 2DSIA 1V9AA 2E4RA 3LMMA 2YBQA 2E16A 2E8HA 2DSGA 3KE8A 3NDCA 2HUVA 2HR8A 4MUXA 3UTDA 2DXVA 2P5FA 2EHLA 3UV3A 3FFYA 2EJKA 2ELEA 2EGSA 2EEQA 2EN5A 3FQ6A 2E4NA 2DSHA 3SZLA 2E8RA 1WNGA 1VA0A 2DXXA 2ED3A 2EL3A 1CBFA 4H4CA 2P9DA 2ZVCA 4EB3A 2EK4A 2PB6A 2EK3A 2ED5A 3SZOA 2E8QA 3KWPA 1PJTA 2EH2A 2EL0A 3TIXB 4H4DA 3UV6A 3T0GA 2ELDA 5HW4A 3SZUA 4MUYA 3ND1A 2DV4A 2PCHA 2DXWA 3F7TA 2E8SA 3T0FA 2BB3A 2HUXA 2EL2A 3KEMA 2E7RA 2P5CA 1PJQA 2EMRA 1PJSA 2DV7A 2E0NA 3KELA 1VCEA 2ENIA 4MV5A 2KYYA 2PCKA 3I4TA 2E0KA 2DV5A 2P6LA 3NEIA 3KE9A 3UV7A 2P2XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PB5 A;  2OWF A;  2EH4 A;  2EHC A;  2P6I A;  2ZVB A;  2PB4 A;  2P6K A;  2HUT A;  2EKA A;  2OWU A;  2DEK A;  2DV3 A;  2OWK A;  2OWV A;  2PCM A;  3NUT A;  1VHV A;  2EJJ A;  2QBU A;  2EGL A;  2EH5 A;  2E07 A;  1S4D A;  2PCA A;  2EMU A;  1WDE A;  2E08 A;  1WYZ A;  2HUQ A;  2EL1 A;  2E15 A;  2EK7 A;  3HH1 A;  2EJZ A;  2PCI A;  2YBO A;  1VE2 A;  2NPN A;  2CBF A;  2E17 A;  2EK2 A;  2PCG A;  2EGB A;  2P6D A;  2OWG A;  2Z6R A;  4E16 A;  2DSI A;  1V9A A;  2E4R A;  2YBQ A;  2E16 A;  2E8H A;  2DSG A;  3NDC A;  2HUV A;  2HR8 A;  2DXV A;  2P5F A;  2EHL A;  3FFY A;  2EJK A;  2ELE A;  2EGS A;  2EEQ A;  2EN5 A;  3FQ6 A;  2E4N A;  2DSH A;  2E8R A;  1WNG A;  1VA0 A;  2DXX A;  2ED3 A;  2EL3 A;  1CBF A;  2P9D A;  2ZVC A;  2EK4 A;  2PB6 A;  2EK3 A;  2ED5 A;  2E8Q A;  3KWP A;  1PJT A;  2EH2 A;  2EL0 A;  2ELD A;  5HW4 A;  3ND1 A;  2DV4 A;  2PCH A;  2DXW A;  2E8S A;  2BB3 A;  2HUX A;  2EL2 A;  2E7R A;  2P5C A;  1PJQ A;  2EMR A;  1PJS A;  2DV7 A;  2E0N A;  1VCE A;  2ENI A;  2PCK A;  3I4T A;  2E0K A;  2DV5 A;  2P6L A;  3NEI A;  2P2X A; 
#chains in the Genus database with same CATH topology
 2PB5 A;  2OWF A;  3DNF A;  3URK A;  2EH4 A;  2EHC A;  3ZGN A;  2P6I A;  2ZVB A;  2PB4 A;  2P6K A;  2HUT A;  2EKA A;  2OWU A;  2DEK A;  2DV3 A;  3UWM A;  2OWK A;  2OWV A;  2PCM A;  3NUT A;  1VHV A;  2EJJ A;  2QBU A;  2EGL A;  3KEF A;  2EH5 A;  2E07 A;  1S4D A;  2PCA A;  2EMU A;  4H4E A;  1WDE A;  2E08 A;  1WYZ A;  2HUQ A;  2EL1 A;  2E15 A;  2EK7 A;  3HH1 A;  4N7B A;  3UTC A;  2EJZ A;  2PCI A;  4MV0 A;  2YBO A;  1VE2 A;  2NPN A;  2CBF A;  3ZGL A;  2E17 A;  2EK2 A;  2PCG A;  2EGB A;  2P6D A;  2OWG A;  2Z6R A;  4E16 A;  2DSI A;  1V9A A;  2E4R A;  3LMM A;  2YBQ A;  2E16 A;  2E8H A;  2DSG A;  3KE8 A;  3NDC A;  2HUV A;  2HR8 A;  4MUX A;  3UTD A;  2DXV A;  2P5F A;  2EHL A;  3UV3 A;  3FFY A;  2EJK A;  2ELE A;  2EGS A;  2EEQ A;  2EN5 A;  3FQ6 A;  2E4N A;  2DSH A;  3SZL A;  2E8R A;  1WNG A;  1VA0 A;  2DXX A;  2ED3 A;  2EL3 A;  1CBF A;  4H4C A;  2P9D A;  2ZVC A;  4EB3 A;  2EK4 A;  2PB6 A;  2EK3 A;  2ED5 A;  3SZO A;  2E8Q A;  3KWP A;  1PJT A;  2EH2 A;  2EL0 A;  3TIX B;  4H4D A;  3UV6 A;  3T0G A;  2ELD A;  5HW4 A;  3SZU A;  4MUY A;  3ND1 A;  2DV4 A;  2PCH A;  2DXW A;  3F7T A;  2E8S A;  3T0F A;  2BB3 A;  2HUX A;  2EL2 A;  3KEM A;  2E7R A;  2P5C A;  1PJQ A;  2EMR A;  1PJS A;  2DV7 A;  2E0N A;  3KEL A;  1VCE A;  2ENI A;  4MV5 A;  2KYY A;  2PCK A;  3I4T A;  2E0K A;  2DV5 A;  2P6L A;  3NEI A;  3KE9 A;  3UV7 A;  2P2X A; 
#chains in the Genus database with same CATH homology
 2PB5 A;  2OWF A;  3DNF A;  3URK A;  2EH4 A;  2EHC A;  3ZGN A;  2P6I A;  2ZVB A;  2PB4 A;  2P6K A;  2HUT A;  2EKA A;  2OWU A;  2DEK A;  2DV3 A;  3UWM A;  2OWK A;  2OWV A;  2PCM A;  3NUT A;  1VHV A;  2EJJ A;  2QBU A;  2EGL A;  3KEF A;  2EH5 A;  2E07 A;  1S4D A;  2PCA A;  2EMU A;  4H4E A;  1WDE A;  2E08 A;  1WYZ A;  2HUQ A;  2EL1 A;  2E15 A;  2EK7 A;  3HH1 A;  4N7B A;  3UTC A;  2EJZ A;  2PCI A;  4MV0 A;  2YBO A;  1VE2 A;  2NPN A;  2CBF A;  3ZGL A;  2E17 A;  2EK2 A;  2PCG A;  2EGB A;  2P6D A;  2OWG A;  2Z6R A;  4E16 A;  2DSI A;  1V9A A;  2E4R A;  3LMM A;  2YBQ A;  2E16 A;  2E8H A;  2DSG A;  3KE8 A;  3NDC A;  2HUV A;  2HR8 A;  4MUX A;  3UTD A;  2DXV A;  2P5F A;  2EHL A;  3UV3 A;  3FFY A;  2EJK A;  2ELE A;  2EGS A;  2EEQ A;  2EN5 A;  3FQ6 A;  2E4N A;  2DSH A;  3SZL A;  2E8R A;  1WNG A;  1VA0 A;  2DXX A;  2ED3 A;  2EL3 A;  1CBF A;  4H4C A;  2P9D A;  2ZVC A;  4EB3 A;  2EK4 A;  2PB6 A;  2EK3 A;  2ED5 A;  3SZO A;  2E8Q A;  3KWP A;  1PJT A;  2EH2 A;  2EL0 A;  3TIX B;  4H4D A;  3UV6 A;  3T0G A;  2ELD A;  5HW4 A;  3SZU A;  4MUY A;  3ND1 A;  2DV4 A;  2PCH A;  2DXW A;  3F7T A;  2E8S A;  3T0F A;  2BB3 A;  2HUX A;  2EL2 A;  3KEM A;  2E7R A;  2P5C A;  1PJQ A;  2EMR A;  1PJS A;  2DV7 A;  2E0N A;  3KEL A;  1VCE A;  2ENI A;  4MV5 A;  2KYY A;  2PCK A;  3I4T A;  2E0K A;  2DV5 A;  2P6L A;  3NEI A;  3KE9 A;  3UV7 A;  2P2X A; 
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