2PB6A

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 84

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGCVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-7)TI1 (12-15)TI3 (39-42)TVIII1 (27-30)S4 (79-84)S2 (29-32)TIV2 (85-88)TIV3 (89-92)AH4 (94-104)S5 (107-111)3H1 (120-123)AH9 (244-254)3H2 (127-129)S6 (130-136)S7 (161-166)AH6 (147-158)TII'1 (140-143)AH7 (178-192)S8 (168-169)3H3 (170-172)S9 (174-175)S12 (234-238)AH8 (221-225)S11 (215-220)TI5 (198-201)TIV4 (206-209)TIV5 (208-211)3H4 (258-261)AH1 (18-26)S3 (56-57)TIV1 (34-37)TI4 (87-90)AH5 (116-119)TVIII2 (195-198)S10 (202-207)AH3 (60-76)AH2 (44-51)Updating...
connected with : NaN
molecule tags Transferase
source organism Pyrococcus horikoshii
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
molecule keywords Probable diphthine synthase
total genus 84
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pb6A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pb6A01
2P5FA 2EMRA 1WYZA 2ED5A 2OWVA 3ND1A 4E16A 2DSGA 2EL0A 2HR8A 2DXWA 2EH5A 2EJKA 2PB6A 2P9DA 2EL2A 2E4RA 1VE2A 2EKAA 2EHLA 3NDCA 1S4DA 2CBFA 2PCHA 3KWPA 2E16A 2P6DA 2PB4A 1V9AA 2EK2A 1WDEA 1VA0A 2ZVCA 2ENIA 2EGLA 2PCIA 2DV5A 1PJQA 2P5CA 2YBOA 2DEKA 3I4TA 2EMUA 2E07A 2ZVBA 2EK7A 2DSIA 2Z6RA 2E4NA 2YBQA 3HH1A 2NPNA 2EHCA 2OWFA 2HUVA 1VHVA 2DV3A 1CBFA 2EH2A 2OWGA 2ELEA 3NUTA 1VCEA 2P2XA 2EJZA 2DXVA 2HUTA 1WNGA 2PCMA 2EK3A 2EK4A 2E7RA 2E17A 2EL1A 2ELDA 2E8QA 2HUQA 2DSHA 2EJJA 3FQ6A 2ED3A 2E0KA 2EH4A 2EL3A 5HW4A 2E8HA 2P6IA 2BB3A 2OWUA 1PJSA 2DV7A 2E8SA 2P6KA 2E0NA 2EEQA 2DXXA 3NEIA 2P6LA 2EGSA 2PCGA 2HUXA 2OWKA 2EGBA 1PJTA 2QBUA 2EN5A 2E8RA 2PCAA 2E15A 2PB5A 2DV4A 2E08A 3FFYA 2PCKA
chains in the Genus database with same CATH superfamily
2P5FA 2EMRA 3UWMA 1WYZA 2ED5A 2OWVA 3ND1A 4E16A 2DSGA 4H4CA 2EL0A 2HR8A 2DXWA 2EH5A 2EJKA 2PB6A 2P9DA 2EL2A 2E4RA 3KEFA 4EB3A 3LMMA 1VE2A 2EKAA 2KYYA 2EHLA 3NDCA 1S4DA 2CBFA 2PCHA 3KWPA 2E16A 2P6DA 2PB4A 4MUYA 1V9AA 2EK2A 3KE8A 1WDEA 1VA0A 2ZVCA 3TIXB 2ENIA 2EGLA 2PCIA 2DV5A 1PJQA 2P5CA 2YBOA 2DEKA 3I4TA 2EMUA 3ZGNA 2E07A 2ZVBA 2EK7A 2DSIA 2Z6RA 2E4NA 2YBQA 3KEMA 3HH1A 2NPNA 2EHCA 2OWFA 4H4DA 2HUVA 1VHVA 2DV3A 3F7TA 1CBFA 2EH2A 2OWGA 2ELEA 3NUTA 3UTCA 1VCEA 2P2XA 2EJZA 2DXVA 2HUTA 3KE9A 1WNGA 4MUXA 2PCMA 3DNFA 2EK3A 2EK4A 2E7RA 2E17A 2EL1A 2ELDA 2E8QA 2HUQA 2DSHA 2EJJA 3UV6A 3FQ6A 2ED3A 4N7BA 3SZLA 2E0KA 2EH4A 2EL3A 5HW4A 4H4EA 2E8HA 2P6IA 2BB3A 2OWUA 3ZGLA 1PJSA 4MV5A 2DV7A 2E8SA 2P6KA 2E0NA 2EEQA 2DXXA 3NEIA 3SZOA 2P6LA 2EGSA 2PCGA 3URKA 2HUXA 2OWKA 3UV7A 3T0FA 2EGBA 1PJTA 3T0GA 2QBUA 2EN5A 2E8RA 2PCAA 3KELA 3SZUA 2E15A 2PB5A 3UTDA 2DV4A 4MV0A 2E08A 3UV3A 3FFYA 2PCKA
chains in the Genus database with same CATH topology
2P5FA 2EMRA 3UWMA 1WYZA 2ED5A 2OWVA 3ND1A 4E16A 2DSGA 4H4CA 2EL0A 2HR8A 2DXWA 2EH5A 2EJKA 2PB6A 2P9DA 2EL2A 2E4RA 3KEFA 4EB3A 3LMMA 1VE2A 2EKAA 2KYYA 2EHLA 3NDCA 1S4DA 2CBFA 2PCHA 3KWPA 2E16A 2P6DA 2PB4A 4MUYA 1V9AA 2EK2A 3KE8A 1WDEA 1VA0A 2ZVCA 3TIXB 2ENIA 2EGLA 2PCIA 2DV5A 1PJQA 2P5CA 2YBOA 2DEKA 3I4TA 2EMUA 3ZGNA 2E07A 2ZVBA 2EK7A 2DSIA 2Z6RA 2E4NA 2YBQA 3KEMA 3HH1A 2NPNA 2EHCA 2OWFA 4H4DA 2HUVA 1VHVA 2DV3A 3F7TA 1CBFA 2EH2A 2OWGA 2ELEA 3NUTA 3UTCA 1VCEA 2P2XA 2EJZA 2DXVA 2HUTA 3KE9A 1WNGA 4MUXA 2PCMA 3DNFA 2EK3A 2EK4A 2E7RA 2E17A 2EL1A 2ELDA 2E8QA 2HUQA 2DSHA 2EJJA 3UV6A 3FQ6A 2ED3A 4N7BA 3SZLA 2E0KA 2EH4A 2EL3A 5HW4A 4H4EA 2E8HA 2P6IA 2BB3A 2OWUA 3ZGLA 1PJSA 4MV5A 2DV7A 2E8SA 2P6KA 2E0NA 2EEQA 2DXXA 3NEIA 3SZOA 2P6LA 2EGSA 2PCGA 3URKA 2HUXA 2OWKA 3UV7A 3T0FA 2EGBA 1PJTA 3T0GA 2QBUA 2EN5A 2E8RA 2PCAA 3KELA 3SZUA 2E15A 2PB5A 3UTDA 2DV4A 4MV0A 2E08A 3UV3A 3FFYA 2PCKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P5F A;  2EMR A;  1WYZ A;  2ED5 A;  2OWV A;  3ND1 A;  4E16 A;  2DSG A;  2EL0 A;  2HR8 A;  2DXW A;  2EH5 A;  2EJK A;  2PB6 A;  2P9D A;  2EL2 A;  2E4R A;  1VE2 A;  2EKA A;  2EHL A;  3NDC A;  1S4D A;  2CBF A;  2PCH A;  3KWP A;  2E16 A;  2P6D A;  2PB4 A;  1V9A A;  2EK2 A;  1WDE A;  1VA0 A;  2ZVC A;  2ENI A;  2EGL A;  2PCI A;  2DV5 A;  1PJQ A;  2P5C A;  2YBO A;  2DEK A;  3I4T A;  2EMU A;  2E07 A;  2ZVB A;  2EK7 A;  2DSI A;  2Z6R A;  2E4N A;  2YBQ A;  3HH1 A;  2NPN A;  2EHC A;  2OWF A;  2HUV A;  1VHV A;  2DV3 A;  1CBF A;  2EH2 A;  2OWG A;  2ELE A;  3NUT A;  1VCE A;  2P2X A;  2EJZ A;  2DXV A;  2HUT A;  1WNG A;  2PCM A;  2EK3 A;  2EK4 A;  2E7R A;  2E17 A;  2EL1 A;  2ELD A;  2E8Q A;  2HUQ A;  2DSH A;  2EJJ A;  3FQ6 A;  2ED3 A;  2E0K A;  2EH4 A;  2EL3 A;  5HW4 A;  2E8H A;  2P6I A;  2BB3 A;  2OWU A;  1PJS A;  2DV7 A;  2E8S A;  2P6K A;  2E0N A;  2EEQ A;  2DXX A;  3NEI A;  2P6L A;  2EGS A;  2PCG A;  2HUX A;  2OWK A;  2EGB A;  1PJT A;  2QBU A;  2EN5 A;  2E8R A;  2PCA A;  2E15 A;  2PB5 A;  2DV4 A;  2E08 A;  3FFY A;  2PCK A; 
#chains in the Genus database with same CATH topology
 2P5F A;  2EMR A;  3UWM A;  1WYZ A;  2ED5 A;  2OWV A;  3ND1 A;  4E16 A;  2DSG A;  4H4C A;  2EL0 A;  2HR8 A;  2DXW A;  2EH5 A;  2EJK A;  2PB6 A;  2P9D A;  2EL2 A;  2E4R A;  3KEF A;  4EB3 A;  3LMM A;  1VE2 A;  2EKA A;  2KYY A;  2EHL A;  3NDC A;  1S4D A;  2CBF A;  2PCH A;  3KWP A;  2E16 A;  2P6D A;  2PB4 A;  4MUY A;  1V9A A;  2EK2 A;  3KE8 A;  1WDE A;  1VA0 A;  2ZVC A;  3TIX B;  2ENI A;  2EGL A;  2PCI A;  2DV5 A;  1PJQ A;  2P5C A;  2YBO A;  2DEK A;  3I4T A;  2EMU A;  3ZGN A;  2E07 A;  2ZVB A;  2EK7 A;  2DSI A;  2Z6R A;  2E4N A;  2YBQ A;  3KEM A;  3HH1 A;  2NPN A;  2EHC A;  2OWF A;  4H4D A;  2HUV A;  1VHV A;  2DV3 A;  3F7T A;  1CBF A;  2EH2 A;  2OWG A;  2ELE A;  3NUT A;  3UTC A;  1VCE A;  2P2X A;  2EJZ A;  2DXV A;  2HUT A;  3KE9 A;  1WNG A;  4MUX A;  2PCM A;  3DNF A;  2EK3 A;  2EK4 A;  2E7R A;  2E17 A;  2EL1 A;  2ELD A;  2E8Q A;  2HUQ A;  2DSH A;  2EJJ A;  3UV6 A;  3FQ6 A;  2ED3 A;  4N7B A;  3SZL A;  2E0K A;  2EH4 A;  2EL3 A;  5HW4 A;  4H4E A;  2E8H A;  2P6I A;  2BB3 A;  2OWU A;  3ZGL A;  1PJS A;  4MV5 A;  2DV7 A;  2E8S A;  2P6K A;  2E0N A;  2EEQ A;  2DXX A;  3NEI A;  3SZO A;  2P6L A;  2EGS A;  2PCG A;  3URK A;  2HUX A;  2OWK A;  3UV7 A;  3T0F A;  2EGB A;  1PJT A;  3T0G A;  2QBU A;  2EN5 A;  2E8R A;  2PCA A;  3KEL A;  3SZU A;  2E15 A;  2PB5 A;  3UTD A;  2DV4 A;  4MV0 A;  2E08 A;  3UV3 A;  3FFY A;  2PCK A; 
#chains in the Genus database with same CATH homology
 2P5F A;  2EMR A;  3UWM A;  1WYZ A;  2ED5 A;  2OWV A;  3ND1 A;  4E16 A;  2DSG A;  4H4C A;  2EL0 A;  2HR8 A;  2DXW A;  2EH5 A;  2EJK A;  2PB6 A;  2P9D A;  2EL2 A;  2E4R A;  3KEF A;  4EB3 A;  3LMM A;  1VE2 A;  2EKA A;  2KYY A;  2EHL A;  3NDC A;  1S4D A;  2CBF A;  2PCH A;  3KWP A;  2E16 A;  2P6D A;  2PB4 A;  4MUY A;  1V9A A;  2EK2 A;  3KE8 A;  1WDE A;  1VA0 A;  2ZVC A;  3TIX B;  2ENI A;  2EGL A;  2PCI A;  2DV5 A;  1PJQ A;  2P5C A;  2YBO A;  2DEK A;  3I4T A;  2EMU A;  3ZGN A;  2E07 A;  2ZVB A;  2EK7 A;  2DSI A;  2Z6R A;  2E4N A;  2YBQ A;  3KEM A;  3HH1 A;  2NPN A;  2EHC A;  2OWF A;  4H4D A;  2HUV A;  1VHV A;  2DV3 A;  3F7T A;  1CBF A;  2EH2 A;  2OWG A;  2ELE A;  3NUT A;  3UTC A;  1VCE A;  2P2X A;  2EJZ A;  2DXV A;  2HUT A;  3KE9 A;  1WNG A;  4MUX A;  2PCM A;  3DNF A;  2EK3 A;  2EK4 A;  2E7R A;  2E17 A;  2EL1 A;  2ELD A;  2E8Q A;  2HUQ A;  2DSH A;  2EJJ A;  3UV6 A;  3FQ6 A;  2ED3 A;  4N7B A;  3SZL A;  2E0K A;  2EH4 A;  2EL3 A;  5HW4 A;  4H4E A;  2E8H A;  2P6I A;  2BB3 A;  2OWU A;  3ZGL A;  1PJS A;  4MV5 A;  2DV7 A;  2E8S A;  2P6K A;  2E0N A;  2EEQ A;  2DXX A;  3NEI A;  3SZO A;  2P6L A;  2EGS A;  2PCG A;  3URK A;  2HUX A;  2OWK A;  3UV7 A;  3T0F A;  2EGB A;  1PJT A;  3T0G A;  2QBU A;  2EN5 A;  2E8R A;  2PCA A;  3KEL A;  3SZU A;  2E15 A;  2PB5 A;  3UTD A;  2DV4 A;  4MV0 A;  2E08 A;  3UV3 A;  3FFY A;  2PCK A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.