2ZVBA

Crystal structure of tt0207 from thermus thermophilus hb8
Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
259
structure length
259
Chain Sequence
GELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTYVKLLEEMGLLAGKEVVRKGMTEELDRAEEALERALSGQRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLISLSDLLTPWPLIERRLHAAGQGDFVVVLYNPQSKRRDWQLRKSAEILLEYRPKETPAALVKSAYRKRQEVALTTLEGLREAEAGMLTTVVIGNRQSRFYEGTFLTPRG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (76-81)TIV1 (9-12)TIV2 (81-84)TII4 (214-217)3H1 (14-16)TII1 (47-50)TVIII1 (28-31)S2 (30-32)AH2 (35-44)TI1 (45-48)AH3 (60-73)S3 (51-53)TII2 (54-57)AH4 (90-101)TIV3 (86-89)S6 (114-118)S5 (104-105)TIV4 (105-108)TI3 (118-121)S10 (177-181)AH5 (133-140)TIV5 (141-144)TIV9 (212-215)S15 (254-256)S8 (142-143)TI4 (143-146)TIV6 (145-148)TII3 (156-159)AH6 (161-174)AH7 (190-200)TI5 (200-203)TIV7 (180-183)TIV8 (185-188)TVIII2 (186-189)TI8 (245-248)S13 (239-243)TI6 (204-207)AH8 (227-231)S12 (221-226)S11 (208-213)TII5 (217-220)TI7 (236-239)S14 (249-251)TIV10 (250-253)TI2 (84-87)S7 (121-128)S9 (149-153)AH1 (19-27)S1 (3-8)Updating...
connected with : NaN
molecule tags Transferase
publication title Crystal structure of TT0207 from Thermus thermophilus HB8
rcsb
molecule keywords Precorrin-3 C17-methyltransferase
total genus 79
structure length 259
sequence length 259
ec nomenclature
pdb deposition date 2008-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2zvbA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2zvbA01
2P6LA 1PJTA 1PJQA 3HH1A 2DV3A 2E15A 2HR8A 2DEKA 2DV7A 2EGBA 2HUTA 2DV4A 2PCKA 1VA0A 2DXVA 2EEQA 2EK2A 2PB5A 2E8HA 2EHLA 2HUVA 2E4NA 2E7RA 2E8QA 2DXXA 2EL0A 2CBFA 2EGSA 2EJKA 2PCMA 1VCEA 2EJZA 2EH2A 2EK3A 2NPNA 2P5CA 2EKAA 3NDCA 2HUQA 2DV5A 1VE2A 2DSHA 1WNGA 2PB6A 2YBQA 2PCAA 5HW4A 2PCHA 2E17A 4E16A 3NUTA 2EMUA 2ED5A 2OWFA 2E07A 2E0KA 1VHVA 2E0NA 2E16A 2P6KA 2ENIA 2ELEA 2P6IA 2EHCA 2PCIA 2DSGA 2OWVA 2EGLA 2EMRA 2YBOA 2EK4A 1CBFA 2E08A 2P6DA 2EL2A 1WDEA 2BB3A 2OWGA 2HUXA 3I4TA 2EK7A 3ND1A 2EH5A 2ZVBA 2DSIA 2OWKA 2E8RA 2PCGA 2E8SA 3NEIA 1V9AA 3FQ6A 1S4DA 2ZVCA 2ELDA 2P9DA 2EJJA 2E4RA 2OWUA 3KWPA 2PB4A 2EH4A 2EN5A 3FFYA 2Z6RA 2QBUA 2EL1A 2ED3A 2EL3A 1WYZA 2P2XA 2DXWA 1PJSA 2P5FA
chains in the Genus database with same CATH superfamily
2P6LA 4H4CA 3UV3A 1PJTA 1PJQA 3HH1A 2DV3A 2E15A 2HR8A 2DEKA 2DV7A 2EGBA 2HUTA 4MUYA 2DV4A 2PCKA 1VA0A 2DXVA 2EEQA 2EK2A 3UV7A 2PB5A 2E8HA 2EHLA 2KYYA 2HUVA 2E4NA 2E7RA 2E8QA 2DXXA 2EL0A 3SZLA 2CBFA 2EGSA 2EJKA 4MUXA 2PCMA 3UTCA 4MV0A 1VCEA 2EJZA 2EH2A 3KELA 2EK3A 3SZUA 2NPNA 3UV6A 2P5CA 3UWMA 2EKAA 3NDCA 2HUQA 2DV5A 1VE2A 3KEFA 2DSHA 1WNGA 2PB6A 2YBQA 2PCAA 5HW4A 4EB3A 2PCHA 2E17A 3TIXB 4E16A 4H4EA 3NUTA 2EMUA 3T0FA 2ED5A 2OWFA 3URKA 3LMMA 4H4DA 2E07A 3KE8A 2E0KA 1VHVA 2E0NA 2E16A 2P6KA 2ENIA 2ELEA 3KEMA 2P6IA 3F7TA 2EHCA 2PCIA 2DSGA 2OWVA 2EGLA 3SZOA 2EMRA 2YBOA 2EK4A 1CBFA 4N7BA 2E08A 2P6DA 2EL2A 1WDEA 2BB3A 2OWGA 2HUXA 3ZGNA 3I4TA 2EK7A 3ND1A 2EH5A 3DNFA 2ZVBA 2DSIA 2OWKA 3KE9A 2E8RA 3T0GA 2PCGA 2E8SA 3NEIA 3ZGLA 1V9AA 3FQ6A 1S4DA 2ZVCA 2ELDA 2P9DA 2EJJA 2E4RA 2OWUA 3KWPA 2PB4A 2EH4A 4MV5A 3UTDA 2EN5A 3FFYA 2Z6RA 2QBUA 2EL1A 2ED3A 2EL3A 1WYZA 2P2XA 2DXWA 1PJSA 2P5FA
chains in the Genus database with same CATH topology
2P6LA 4H4CA 3UV3A 1PJTA 1PJQA 3HH1A 2DV3A 2E15A 2HR8A 2DEKA 2DV7A 2EGBA 2HUTA 4MUYA 2DV4A 2PCKA 1VA0A 2DXVA 2EEQA 2EK2A 3UV7A 2PB5A 2E8HA 2EHLA 2KYYA 2HUVA 2E4NA 2E7RA 2E8QA 2DXXA 2EL0A 3SZLA 2CBFA 2EGSA 2EJKA 4MUXA 2PCMA 3UTCA 4MV0A 1VCEA 2EJZA 2EH2A 3KELA 2EK3A 3SZUA 2NPNA 3UV6A 2P5CA 3UWMA 2EKAA 3NDCA 2HUQA 2DV5A 1VE2A 3KEFA 2DSHA 1WNGA 2PB6A 2YBQA 2PCAA 5HW4A 4EB3A 2PCHA 2E17A 3TIXB 4E16A 4H4EA 3NUTA 2EMUA 3T0FA 2ED5A 2OWFA 3URKA 3LMMA 4H4DA 2E07A 3KE8A 2E0KA 1VHVA 2E0NA 2E16A 2P6KA 2ENIA 2ELEA 3KEMA 2P6IA 3F7TA 2EHCA 2PCIA 2DSGA 2OWVA 2EGLA 3SZOA 2EMRA 2YBOA 2EK4A 1CBFA 4N7BA 2E08A 2P6DA 2EL2A 1WDEA 2BB3A 2OWGA 2HUXA 3ZGNA 3I4TA 2EK7A 3ND1A 2EH5A 3DNFA 2ZVBA 2DSIA 2OWKA 3KE9A 2E8RA 3T0GA 2PCGA 2E8SA 3NEIA 3ZGLA 1V9AA 3FQ6A 1S4DA 2ZVCA 2ELDA 2P9DA 2EJJA 2E4RA 2OWUA 3KWPA 2PB4A 2EH4A 4MV5A 3UTDA 2EN5A 3FFYA 2Z6RA 2QBUA 2EL1A 2ED3A 2EL3A 1WYZA 2P2XA 2DXWA 1PJSA 2P5FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P6L A;  1PJT A;  1PJQ A;  3HH1 A;  2DV3 A;  2E15 A;  2HR8 A;  2DEK A;  2DV7 A;  2EGB A;  2HUT A;  2DV4 A;  2PCK A;  1VA0 A;  2DXV A;  2EEQ A;  2EK2 A;  2PB5 A;  2E8H A;  2EHL A;  2HUV A;  2E4N A;  2E7R A;  2E8Q A;  2DXX A;  2EL0 A;  2CBF A;  2EGS A;  2EJK A;  2PCM A;  1VCE A;  2EJZ A;  2EH2 A;  2EK3 A;  2NPN A;  2P5C A;  2EKA A;  3NDC A;  2HUQ A;  2DV5 A;  1VE2 A;  2DSH A;  1WNG A;  2PB6 A;  2YBQ A;  2PCA A;  5HW4 A;  2PCH A;  2E17 A;  4E16 A;  3NUT A;  2EMU A;  2ED5 A;  2OWF A;  2E07 A;  2E0K A;  1VHV A;  2E0N A;  2E16 A;  2P6K A;  2ENI A;  2ELE A;  2P6I A;  2EHC A;  2PCI A;  2DSG A;  2OWV A;  2EGL A;  2EMR A;  2YBO A;  2EK4 A;  1CBF A;  2E08 A;  2P6D A;  2EL2 A;  1WDE A;  2BB3 A;  2OWG A;  2HUX A;  3I4T A;  2EK7 A;  3ND1 A;  2EH5 A;  2ZVB A;  2DSI A;  2OWK A;  2E8R A;  2PCG A;  2E8S A;  3NEI A;  1V9A A;  3FQ6 A;  1S4D A;  2ZVC A;  2ELD A;  2P9D A;  2EJJ A;  2E4R A;  2OWU A;  3KWP A;  2PB4 A;  2EH4 A;  2EN5 A;  3FFY A;  2Z6R A;  2QBU A;  2EL1 A;  2ED3 A;  2EL3 A;  1WYZ A;  2P2X A;  2DXW A;  1PJS A;  2P5F A; 
#chains in the Genus database with same CATH topology
 2P6L A;  4H4C A;  3UV3 A;  1PJT A;  1PJQ A;  3HH1 A;  2DV3 A;  2E15 A;  2HR8 A;  2DEK A;  2DV7 A;  2EGB A;  2HUT A;  4MUY A;  2DV4 A;  2PCK A;  1VA0 A;  2DXV A;  2EEQ A;  2EK2 A;  3UV7 A;  2PB5 A;  2E8H A;  2EHL A;  2KYY A;  2HUV A;  2E4N A;  2E7R A;  2E8Q A;  2DXX A;  2EL0 A;  3SZL A;  2CBF A;  2EGS A;  2EJK A;  4MUX A;  2PCM A;  3UTC A;  4MV0 A;  1VCE A;  2EJZ A;  2EH2 A;  3KEL A;  2EK3 A;  3SZU A;  2NPN A;  3UV6 A;  2P5C A;  3UWM A;  2EKA A;  3NDC A;  2HUQ A;  2DV5 A;  1VE2 A;  3KEF A;  2DSH A;  1WNG A;  2PB6 A;  2YBQ A;  2PCA A;  5HW4 A;  4EB3 A;  2PCH A;  2E17 A;  3TIX B;  4E16 A;  4H4E A;  3NUT A;  2EMU A;  3T0F A;  2ED5 A;  2OWF A;  3URK A;  3LMM A;  4H4D A;  2E07 A;  3KE8 A;  2E0K A;  1VHV A;  2E0N A;  2E16 A;  2P6K A;  2ENI A;  2ELE A;  3KEM A;  2P6I A;  3F7T A;  2EHC A;  2PCI A;  2DSG A;  2OWV A;  2EGL A;  3SZO A;  2EMR A;  2YBO A;  2EK4 A;  1CBF A;  4N7B A;  2E08 A;  2P6D A;  2EL2 A;  1WDE A;  2BB3 A;  2OWG A;  2HUX A;  3ZGN A;  3I4T A;  2EK7 A;  3ND1 A;  2EH5 A;  3DNF A;  2ZVB A;  2DSI A;  2OWK A;  3KE9 A;  2E8R A;  3T0G A;  2PCG A;  2E8S A;  3NEI A;  3ZGL A;  1V9A A;  3FQ6 A;  1S4D A;  2ZVC A;  2ELD A;  2P9D A;  2EJJ A;  2E4R A;  2OWU A;  3KWP A;  2PB4 A;  2EH4 A;  4MV5 A;  3UTD A;  2EN5 A;  3FFY A;  2Z6R A;  2QBU A;  2EL1 A;  2ED3 A;  2EL3 A;  1WYZ A;  2P2X A;  2DXW A;  1PJS A;  2P5F A; 
#chains in the Genus database with same CATH homology
 2P6L A;  4H4C A;  3UV3 A;  1PJT A;  1PJQ A;  3HH1 A;  2DV3 A;  2E15 A;  2HR8 A;  2DEK A;  2DV7 A;  2EGB A;  2HUT A;  4MUY A;  2DV4 A;  2PCK A;  1VA0 A;  2DXV A;  2EEQ A;  2EK2 A;  3UV7 A;  2PB5 A;  2E8H A;  2EHL A;  2KYY A;  2HUV A;  2E4N A;  2E7R A;  2E8Q A;  2DXX A;  2EL0 A;  3SZL A;  2CBF A;  2EGS A;  2EJK A;  4MUX A;  2PCM A;  3UTC A;  4MV0 A;  1VCE A;  2EJZ A;  2EH2 A;  3KEL A;  2EK3 A;  3SZU A;  2NPN A;  3UV6 A;  2P5C A;  3UWM A;  2EKA A;  3NDC A;  2HUQ A;  2DV5 A;  1VE2 A;  3KEF A;  2DSH A;  1WNG A;  2PB6 A;  2YBQ A;  2PCA A;  5HW4 A;  4EB3 A;  2PCH A;  2E17 A;  3TIX B;  4E16 A;  4H4E A;  3NUT A;  2EMU A;  3T0F A;  2ED5 A;  2OWF A;  3URK A;  3LMM A;  4H4D A;  2E07 A;  3KE8 A;  2E0K A;  1VHV A;  2E0N A;  2E16 A;  2P6K A;  2ENI A;  2ELE A;  3KEM A;  2P6I A;  3F7T A;  2EHC A;  2PCI A;  2DSG A;  2OWV A;  2EGL A;  3SZO A;  2EMR A;  2YBO A;  2EK4 A;  1CBF A;  4N7B A;  2E08 A;  2P6D A;  2EL2 A;  1WDE A;  2BB3 A;  2OWG A;  2HUX A;  3ZGN A;  3I4T A;  2EK7 A;  3ND1 A;  2EH5 A;  3DNF A;  2ZVB A;  2DSI A;  2OWK A;  3KE9 A;  2E8R A;  3T0G A;  2PCG A;  2E8S A;  3NEI A;  3ZGL A;  1V9A A;  3FQ6 A;  1S4D A;  2ZVC A;  2ELD A;  2P9D A;  2EJJ A;  2E4R A;  2OWU A;  3KWP A;  2PB4 A;  2EH4 A;  4MV5 A;  3UTD A;  2EN5 A;  3FFY A;  2Z6R A;  2QBU A;  2EL1 A;  2ED3 A;  2EL3 A;  1WYZ A;  2P2X A;  2DXW A;  1PJS A;  2P5F A; 
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