3NDCA

Crystal structure of precorrin-4 c11-methyltransferase from rhodobacter capsulatus
Total Genus 69

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
236
structure length
236
Chain Sequence
GSHMTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENFARTGAVLAIHLSVHVLDEVVQKLVPHYGEDCPVAIVWRASWPDQRVVRATLATLQTSLGAELERTALILVGRSLATEDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-7)S5 (104-107)TI1 (12-15)TI5 (83-86)AH1 (18-25)TI8 (195-198)EMPTYS2 (29-32)TVIII1 (27-30)S3 (50-53)O1 (32-34)TI4 (54-57)S4 (76-80)TI3 (34-37)3H1 (39-44)TII1 (46-49)AH2 (59-72)AH3 (90-100)TIV1 (85-88)AH4 (112-120)S9 (199-204)TI9 (204-207)TII2 (126-129)S6 (133-137)TIV5 (163-166)TIV3 (139-142)TI6 (146-149)AH6 (170-181)TIV4 (140-143)AH5 (151-157)S7 (160-164)TI7 (182-185)3H4 (226-228)3H2 (167-169)S8 (186-191)TI10 (205-208)TII3 (190-193)S10 (220-224)TII4 (192-195)3H3 (210-213)O3 (231-233)Updating...
connected with : NaN
molecule tags Transferase
source organism Rhodobacter capsulatus
publication title Crystal structure of Precorrin-4 C11-methyltransferase from Rhodobacter capsulatus
rcsb
molecule keywords Precorrin-4 C(11)-methyltransferase
total genus 69
structure length 236
sequence length 236
chains with identical sequence B
ec nomenclature ec 2.1.1.133: Precorrin-4 C(11)-methyltransferase.
pdb deposition date 2010-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 3ndcA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 3ndcA01
1VHVA 2P6LA 2OWFA 2HUXA 3I4TA 2HUQA 2E8HA 2PB6A 2YBOA 1V9AA 1VE2A 2EMUA 3KWPA 2E07A 2DXWA 2EH4A 2OWVA 2P5FA 1WDEA 1VCEA 2HUTA 1WYZA 2ED3A 2ZVCA 1WNGA 2P5CA 5HW4A 2DV5A 2EL0A 2DSGA 2EK3A 2DXXA 2CBFA 2P9DA 2EK7A 1CBFA 3HH1A 2PCGA 2E0NA 2EH2A 2EMRA 2EK4A 2EGSA 2E16A 3NEIA 2ED5A 2EH5A 2E4NA 2PCIA 2P6IA 2DV4A 2EN5A 2ELDA 2EGLA 2E7RA 2P6KA 2EJKA 2EJJA 2HR8A 2EKAA 2Z6RA 2OWUA 3ND1A 2EHCA 2BB3A 2EL1A 2E8QA 2DEKA 2OWKA 2EGBA 2P6DA 2EK2A 2ELEA 2P2XA 2EEQA 2ENIA 2QBUA 2PB5A 2DXVA 2DSIA 2PB4A 2OWGA 2HUVA 2PCMA 2DV7A 1VA0A 2E08A 2DSHA 2EHLA 2ZVBA 4E16A 2YBQA 1S4DA 2EJZA 3FFYA 2E15A 2E4RA 2PCAA 3FQ6A 2E8SA 3NUTA 2EL2A 1PJQA 1PJSA 2PCKA 2PCHA 2EL3A 2E17A 2E0KA 2E8RA 1PJTA 2NPNA 2DV3A 3NDCA
chains in the Genus database with same CATH superfamily
4H4EA 4H4CA 3KE8A 3ZGNA 1VHVA 2KYYA 3LMMA 3KELA 2P6LA 2OWFA 3UV6A 2HUXA 3I4TA 3UTCA 2HUQA 2E8HA 2PB6A 2YBOA 1V9AA 4MUYA 3TIXB 3UV7A 1VE2A 2EMUA 3KWPA 2E07A 2DXWA 2EH4A 2OWVA 3KEMA 2P5FA 1WDEA 1VCEA 2HUTA 1WYZA 2ED3A 4H4DA 2ZVCA 1WNGA 2P5CA 5HW4A 2DV5A 4EB3A 3SZOA 2EL0A 2DSGA 2EK3A 2DXXA 2CBFA 3KEFA 2P9DA 2EK7A 1CBFA 3HH1A 2PCGA 2E0NA 2EH2A 2EMRA 2EK4A 4N7BA 3URKA 2EGSA 2E16A 3NEIA 2ED5A 2EH5A 2E4NA 2PCIA 2P6IA 3SZUA 3UWMA 2DV4A 4MUXA 2EN5A 2ELDA 2EGLA 2E7RA 2P6KA 2EJKA 2EJJA 2HR8A 3T0GA 2EKAA 2Z6RA 2OWUA 3ND1A 2EHCA 3UV3A 2BB3A 2EL1A 2E8QA 2DEKA 2OWKA 2EGBA 3F7TA 2P6DA 2EK2A 2ELEA 2P2XA 3DNFA 2EEQA 4MV5A 2ENIA 2QBUA 2PB5A 2DXVA 2DSIA 2PB4A 2OWGA 2HUVA 2PCMA 2DV7A 3KE9A 1VA0A 2E08A 2DSHA 2EHLA 2ZVBA 4E16A 3UTDA 3T0FA 4MV0A 2YBQA 1S4DA 3ZGLA 2EJZA 3FFYA 2E15A 2E4RA 2PCAA 3FQ6A 2E8SA 3NUTA 2EL2A 1PJQA 1PJSA 2PCKA 2PCHA 2EL3A 2E17A 2E0KA 2E8RA 1PJTA 2NPNA 2DV3A 3NDCA 3SZLA
chains in the Genus database with same CATH topology
4H4EA 4H4CA 3KE8A 3ZGNA 1VHVA 2KYYA 3LMMA 3KELA 2P6LA 2OWFA 3UV6A 2HUXA 3I4TA 3UTCA 2HUQA 2E8HA 2PB6A 2YBOA 1V9AA 4MUYA 3TIXB 3UV7A 1VE2A 2EMUA 3KWPA 2E07A 2DXWA 2EH4A 2OWVA 3KEMA 2P5FA 1WDEA 1VCEA 2HUTA 1WYZA 2ED3A 4H4DA 2ZVCA 1WNGA 2P5CA 5HW4A 2DV5A 4EB3A 3SZOA 2EL0A 2DSGA 2EK3A 2DXXA 2CBFA 3KEFA 2P9DA 2EK7A 1CBFA 3HH1A 2PCGA 2E0NA 2EH2A 2EMRA 2EK4A 4N7BA 3URKA 2EGSA 2E16A 3NEIA 2ED5A 2EH5A 2E4NA 2PCIA 2P6IA 3SZUA 3UWMA 2DV4A 4MUXA 2EN5A 2ELDA 2EGLA 2E7RA 2P6KA 2EJKA 2EJJA 2HR8A 3T0GA 2EKAA 2Z6RA 2OWUA 3ND1A 2EHCA 3UV3A 2BB3A 2EL1A 2E8QA 2DEKA 2OWKA 2EGBA 3F7TA 2P6DA 2EK2A 2ELEA 2P2XA 3DNFA 2EEQA 4MV5A 2ENIA 2QBUA 2PB5A 2DXVA 2DSIA 2PB4A 2OWGA 2HUVA 2PCMA 2DV7A 3KE9A 1VA0A 2E08A 2DSHA 2EHLA 2ZVBA 4E16A 3UTDA 3T0FA 4MV0A 2YBQA 1S4DA 3ZGLA 2EJZA 3FFYA 2E15A 2E4RA 2PCAA 3FQ6A 2E8SA 3NUTA 2EL2A 1PJQA 1PJSA 2PCKA 2PCHA 2EL3A 2E17A 2E0KA 2E8RA 1PJTA 2NPNA 2DV3A 3NDCA 3SZLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VHV A;  2P6L A;  2OWF A;  2HUX A;  3I4T A;  2HUQ A;  2E8H A;  2PB6 A;  2YBO A;  1V9A A;  1VE2 A;  2EMU A;  3KWP A;  2E07 A;  2DXW A;  2EH4 A;  2OWV A;  2P5F A;  1WDE A;  1VCE A;  2HUT A;  1WYZ A;  2ED3 A;  2ZVC A;  1WNG A;  2P5C A;  5HW4 A;  2DV5 A;  2EL0 A;  2DSG A;  2EK3 A;  2DXX A;  2CBF A;  2P9D A;  2EK7 A;  1CBF A;  3HH1 A;  2PCG A;  2E0N A;  2EH2 A;  2EMR A;  2EK4 A;  2EGS A;  2E16 A;  3NEI A;  2ED5 A;  2EH5 A;  2E4N A;  2PCI A;  2P6I A;  2DV4 A;  2EN5 A;  2ELD A;  2EGL A;  2E7R A;  2P6K A;  2EJK A;  2EJJ A;  2HR8 A;  2EKA A;  2Z6R A;  2OWU A;  3ND1 A;  2EHC A;  2BB3 A;  2EL1 A;  2E8Q A;  2DEK A;  2OWK A;  2EGB A;  2P6D A;  2EK2 A;  2ELE A;  2P2X A;  2EEQ A;  2ENI A;  2QBU A;  2PB5 A;  2DXV A;  2DSI A;  2PB4 A;  2OWG A;  2HUV A;  2PCM A;  2DV7 A;  1VA0 A;  2E08 A;  2DSH A;  2EHL A;  2ZVB A;  4E16 A;  2YBQ A;  1S4D A;  2EJZ A;  3FFY A;  2E15 A;  2E4R A;  2PCA A;  3FQ6 A;  2E8S A;  3NUT A;  2EL2 A;  1PJQ A;  1PJS A;  2PCK A;  2PCH A;  2EL3 A;  2E17 A;  2E0K A;  2E8R A;  1PJT A;  2NPN A;  2DV3 A;  3NDC A; 
#chains in the Genus database with same CATH topology
 4H4E A;  4H4C A;  3KE8 A;  3ZGN A;  1VHV A;  2KYY A;  3LMM A;  3KEL A;  2P6L A;  2OWF A;  3UV6 A;  2HUX A;  3I4T A;  3UTC A;  2HUQ A;  2E8H A;  2PB6 A;  2YBO A;  1V9A A;  4MUY A;  3TIX B;  3UV7 A;  1VE2 A;  2EMU A;  3KWP A;  2E07 A;  2DXW A;  2EH4 A;  2OWV A;  3KEM A;  2P5F A;  1WDE A;  1VCE A;  2HUT A;  1WYZ A;  2ED3 A;  4H4D A;  2ZVC A;  1WNG A;  2P5C A;  5HW4 A;  2DV5 A;  4EB3 A;  3SZO A;  2EL0 A;  2DSG A;  2EK3 A;  2DXX A;  2CBF A;  3KEF A;  2P9D A;  2EK7 A;  1CBF A;  3HH1 A;  2PCG A;  2E0N A;  2EH2 A;  2EMR A;  2EK4 A;  4N7B A;  3URK A;  2EGS A;  2E16 A;  3NEI A;  2ED5 A;  2EH5 A;  2E4N A;  2PCI A;  2P6I A;  3SZU A;  3UWM A;  2DV4 A;  4MUX A;  2EN5 A;  2ELD A;  2EGL A;  2E7R A;  2P6K A;  2EJK A;  2EJJ A;  2HR8 A;  3T0G A;  2EKA A;  2Z6R A;  2OWU A;  3ND1 A;  2EHC A;  3UV3 A;  2BB3 A;  2EL1 A;  2E8Q A;  2DEK A;  2OWK A;  2EGB A;  3F7T A;  2P6D A;  2EK2 A;  2ELE A;  2P2X A;  3DNF A;  2EEQ A;  4MV5 A;  2ENI A;  2QBU A;  2PB5 A;  2DXV A;  2DSI A;  2PB4 A;  2OWG A;  2HUV A;  2PCM A;  2DV7 A;  3KE9 A;  1VA0 A;  2E08 A;  2DSH A;  2EHL A;  2ZVB A;  4E16 A;  3UTD A;  3T0F A;  4MV0 A;  2YBQ A;  1S4D A;  3ZGL A;  2EJZ A;  3FFY A;  2E15 A;  2E4R A;  2PCA A;  3FQ6 A;  2E8S A;  3NUT A;  2EL2 A;  1PJQ A;  1PJS A;  2PCK A;  2PCH A;  2EL3 A;  2E17 A;  2E0K A;  2E8R A;  1PJT A;  2NPN A;  2DV3 A;  3NDC A;  3SZL A; 
#chains in the Genus database with same CATH homology
 4H4E A;  4H4C A;  3KE8 A;  3ZGN A;  1VHV A;  2KYY A;  3LMM A;  3KEL A;  2P6L A;  2OWF A;  3UV6 A;  2HUX A;  3I4T A;  3UTC A;  2HUQ A;  2E8H A;  2PB6 A;  2YBO A;  1V9A A;  4MUY A;  3TIX B;  3UV7 A;  1VE2 A;  2EMU A;  3KWP A;  2E07 A;  2DXW A;  2EH4 A;  2OWV A;  3KEM A;  2P5F A;  1WDE A;  1VCE A;  2HUT A;  1WYZ A;  2ED3 A;  4H4D A;  2ZVC A;  1WNG A;  2P5C A;  5HW4 A;  2DV5 A;  4EB3 A;  3SZO A;  2EL0 A;  2DSG A;  2EK3 A;  2DXX A;  2CBF A;  3KEF A;  2P9D A;  2EK7 A;  1CBF A;  3HH1 A;  2PCG A;  2E0N A;  2EH2 A;  2EMR A;  2EK4 A;  4N7B A;  3URK A;  2EGS A;  2E16 A;  3NEI A;  2ED5 A;  2EH5 A;  2E4N A;  2PCI A;  2P6I A;  3SZU A;  3UWM A;  2DV4 A;  4MUX A;  2EN5 A;  2ELD A;  2EGL A;  2E7R A;  2P6K A;  2EJK A;  2EJJ A;  2HR8 A;  3T0G A;  2EKA A;  2Z6R A;  2OWU A;  3ND1 A;  2EHC A;  3UV3 A;  2BB3 A;  2EL1 A;  2E8Q A;  2DEK A;  2OWK A;  2EGB A;  3F7T A;  2P6D A;  2EK2 A;  2ELE A;  2P2X A;  3DNF A;  2EEQ A;  4MV5 A;  2ENI A;  2QBU A;  2PB5 A;  2DXV A;  2DSI A;  2PB4 A;  2OWG A;  2HUV A;  2PCM A;  2DV7 A;  3KE9 A;  1VA0 A;  2E08 A;  2DSH A;  2EHL A;  2ZVB A;  4E16 A;  3UTD A;  3T0F A;  4MV0 A;  2YBQ A;  1S4D A;  3ZGL A;  2EJZ A;  3FFY A;  2E15 A;  2E4R A;  2PCA A;  3FQ6 A;  2E8S A;  3NUT A;  2EL2 A;  1PJQ A;  1PJS A;  2PCK A;  2PCH A;  2EL3 A;  2E17 A;  2E0K A;  2E8R A;  1PJT A;  2NPN A;  2DV3 A;  3NDC A;  3SZL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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