3NUT | Genus

Total Genus 66

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	66
sequence length	240
structure length	240
Chain Sequence	SGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVARIAPREGLTLHPTDNRVELDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHAARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATPEMADMRTVVLVGNAATRRVGPWVYTPR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
publication title	Crystal structure of the methyltransferase CobJ rcsb
molecule keywords	Precorrin-3 methylase
total genus	66
structure length	240
sequence length	240
chains with identical sequence	B, C, D
ec nomenclature	ec 2.1.1.-:
pdb deposition date	2010-07-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00590	TP_methylase	Tetrapyrrole (Corrin/Porphyrin) Methylases

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.950.10	Alpha Beta	2-Layer Sandwich	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	3nutA02
3.40.1010.10	Alpha Beta	3-Layer(aba) Sandwich	Cobalt-precorrin-4 Transmethylase; domain 1	Cobalt-precorrin-4 Transmethylase; Domain 1	3nutA01

2E4RA 1VE2A 1S4DA 1VA0A 2E08A 2PCGA 2QBUA 1V9AA 2CBFA 2DXXA 2NPNA 2EKAA 2E8HA 2Z6RA 2ELDA 2OWUA 2PB6A 2OWVA 2PCHA 2EN5A 2DSHA 2EL3A 2DEKA 2DXVA 2ENIA 2EHLA 2P5CA 3KWPA 2EL0A 2DV3A 2E8QA 2HUVA 2YBQA 2EK2A 2DV4A 2PB5A 2E8RA 2EL2A 3ND1A 1CBFA 1WNGA 2ELEA 2ED3A 2E16A 3I4TA 3NDCA 3NUTA 2DSGA 2PB4A 2ZVBA 2EH5A 2P6DA 1WDEA 2OWGA 2EK4A 1WYZA 3FFYA 2HUXA 2P9DA 2HUQA 2OWKA 1PJQA 1PJSA 2HR8A 2E15A 1VCEA 2DV7A 1PJTA 2PCMA 2P5FA 2EGSA 2ZVCA 2DSIA 2EGBA 2P6KA 2EHCA 2BB3A 1VHVA 2EMUA 2E0NA 3NEIA 2PCKA 2OWFA 2HUTA 2ED5A 2E7RA 2E8SA 2EJJA 2EH4A 3HH1A 2E07A 2P6IA 2PCAA 2EK7A 2P6LA 2PCIA 2EK3A 2E17A 2E0KA 2DXWA 4E16A 2EJKA 2EMRA 2P2XA 2EJZA 2EL1A 2EEQA 2E4NA 2EGLA 2YBOA 3FQ6A 2EH2A 5HW4A 2DV5A
chains in the Genus database with same CATH superfamily

2E4RA 1VE2A 1S4DA 1VA0A 2E08A 2PCGA 3T0FA 2QBUA 1V9AA 2CBFA 2DXXA 2NPNA 4H4CA 4H4EA 4N7BA 2EKAA 2E8HA 3UV7A 2Z6RA 2ELDA 3TIXB 2OWUA 2PB6A 2OWVA 2PCHA 2EN5A 2DSHA 2EL3A 4MUYA 2DEKA 2DXVA 2ENIA 2EHLA 2P5CA 3KWPA 2EL0A 2DV3A 2E8QA 2HUVA 2YBQA 2EK2A 2DV4A 2PB5A 3UTDA 2E8RA 2EL2A 3SZLA 3ND1A 4MUXA 1CBFA 3UWMA 1WNGA 4MV0A 2ELEA 4H4DA 2ED3A 2E16A 3I4TA 3NDCA 3NUTA 2DSGA 3LMMA 2PB4A 2ZVBA 2EH5A 4EB3A 2P6DA 1WDEA 2OWGA 2EK4A 1WYZA 3FFYA 2HUXA 2P9DA 3T0GA 2HUQA 2OWKA 3UV3A 1PJQA 1PJSA 2HR8A 3KE9A 2E15A 3SZUA 1VCEA 3F7TA 3ZGNA 2DV7A 1PJTA 2PCMA 2P5FA 4MV5A 2EGSA 3UV6A 2ZVCA 2DSIA 2EGBA 2P6KA 2EHCA 2BB3A 1VHVA 2EMUA 2E0NA 3NEIA 2PCKA 2OWFA 2HUTA 2ED5A 2E7RA 2E8SA 2EJJA 2EH4A 3HH1A 3URKA 2E07A 2P6IA 2KYYA 3KEMA 2PCAA 2EK7A 3KEFA 2P6LA 2PCIA 3DNFA 2EK3A 2E17A 3UTCA 2E0KA 2DXWA 3KELA 4E16A 3KE8A 2EJKA 2EMRA 2P2XA 2EJZA 2EL1A 3SZOA 2EEQA 2E4NA 2EGLA 2YBOA 3FQ6A 3ZGLA 2EH2A 5HW4A 2DV5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2E4R A;  1VE2 A;  1S4D A;  1VA0 A;  2E08 A;  2PCG A;  2QBU A;  1V9A A;  2CBF A;  2DXX A;  2NPN A;  2EKA A;  2E8H A;  2Z6R A;  2ELD A;  2OWU A;  2PB6 A;  2OWV A;  2PCH A;  2EN5 A;  2DSH A;  2EL3 A;  2DEK A;  2DXV A;  2ENI A;  2EHL A;  2P5C A;  3KWP A;  2EL0 A;  2DV3 A;  2E8Q A;  2HUV A;  2YBQ A;  2EK2 A;  2DV4 A;  2PB5 A;  2E8R A;  2EL2 A;  3ND1 A;  1CBF A;  1WNG A;  2ELE A;  2ED3 A;  2E16 A;  3I4T A;  3NDC A;  3NUT A;  2DSG A;  2PB4 A;  2ZVB A;  2EH5 A;  2P6D A;  1WDE A;  2OWG A;  2EK4 A;  1WYZ A;  3FFY A;  2HUX A;  2P9D A;  2HUQ A;  2OWK A;  1PJQ A;  1PJS A;  2HR8 A;  2E15 A;  1VCE A;  2DV7 A;  1PJT A;  2PCM A;  2P5F A;  2EGS A;  2ZVC A;  2DSI A;  2EGB A;  2P6K A;  2EHC A;  2BB3 A;  1VHV A;  2EMU A;  2E0N A;  3NEI A;  2PCK A;  2OWF A;  2HUT A;  2ED5 A;  2E7R A;  2E8S A;  2EJJ A;  2EH4 A;  3HH1 A;  2E07 A;  2P6I A;  2PCA A;  2EK7 A;  2P6L A;  2PCI A;  2EK3 A;  2E17 A;  2E0K A;  2DXW A;  4E16 A;  2EJK A;  2EMR A;  2P2X A;  2EJZ A;  2EL1 A;  2EEQ A;  2E4N A;  2EGL A;  2YBO A;  3FQ6 A;  2EH2 A;  5HW4 A;  2DV5 A; 
#chains in the Genus database with same CATH topology
 2E4R A;  1VE2 A;  1S4D A;  1VA0 A;  2E08 A;  2PCG A;  3T0F A;  2QBU A;  1V9A A;  2CBF A;  2DXX A;  2NPN A;  4H4C A;  4H4E A;  4N7B A;  2EKA A;  2E8H A;  3UV7 A;  2Z6R A;  2ELD A;  3TIX B;  2OWU A;  2PB6 A;  2OWV A;  2PCH A;  2EN5 A;  2DSH A;  2EL3 A;  4MUY A;  2DEK A;  2DXV A;  2ENI A;  2EHL A;  2P5C A;  3KWP A;  2EL0 A;  2DV3 A;  2E8Q A;  2HUV A;  2YBQ A;  2EK2 A;  2DV4 A;  2PB5 A;  3UTD A;  2E8R A;  2EL2 A;  3SZL A;  3ND1 A;  4MUX A;  1CBF A;  3UWM A;  1WNG A;  4MV0 A;  2ELE A;  4H4D A;  2ED3 A;  2E16 A;  3I4T A;  3NDC A;  3NUT A;  2DSG A;  3LMM A;  2PB4 A;  2ZVB A;  2EH5 A;  4EB3 A;  2P6D A;  1WDE A;  2OWG A;  2EK4 A;  1WYZ A;  3FFY A;  2HUX A;  2P9D A;  3T0G A;  2HUQ A;  2OWK A;  3UV3 A;  1PJQ A;  1PJS A;  2HR8 A;  3KE9 A;  2E15 A;  3SZU A;  1VCE A;  3F7T A;  3ZGN A;  2DV7 A;  1PJT A;  2PCM A;  2P5F A;  4MV5 A;  2EGS A;  3UV6 A;  2ZVC A;  2DSI A;  2EGB A;  2P6K A;  2EHC A;  2BB3 A;  1VHV A;  2EMU A;  2E0N A;  3NEI A;  2PCK A;  2OWF A;  2HUT A;  2ED5 A;  2E7R A;  2E8S A;  2EJJ A;  2EH4 A;  3HH1 A;  3URK A;  2E07 A;  2P6I A;  2KYY A;  3KEM A;  2PCA A;  2EK7 A;  3KEF A;  2P6L A;  2PCI A;  3DNF A;  2EK3 A;  2E17 A;  3UTC A;  2E0K A;  2DXW A;  3KEL A;  4E16 A;  3KE8 A;  2EJK A;  2EMR A;  2P2X A;  2EJZ A;  2EL1 A;  3SZO A;  2EEQ A;  2E4N A;  2EGL A;  2YBO A;  3FQ6 A;  3ZGL A;  2EH2 A;  5HW4 A;  2DV5 A; 
#chains in the Genus database with same CATH homology
 2E4R A;  1VE2 A;  1S4D A;  1VA0 A;  2E08 A;  2PCG A;  3T0F A;  2QBU A;  1V9A A;  2CBF A;  2DXX A;  2NPN A;  4H4C A;  4H4E A;  4N7B A;  2EKA A;  2E8H A;  3UV7 A;  2Z6R A;  2ELD A;  3TIX B;  2OWU A;  2PB6 A;  2OWV A;  2PCH A;  2EN5 A;  2DSH A;  2EL3 A;  4MUY A;  2DEK A;  2DXV A;  2ENI A;  2EHL A;  2P5C A;  3KWP A;  2EL0 A;  2DV3 A;  2E8Q A;  2HUV A;  2YBQ A;  2EK2 A;  2DV4 A;  2PB5 A;  3UTD A;  2E8R A;  2EL2 A;  3SZL A;  3ND1 A;  4MUX A;  1CBF A;  3UWM A;  1WNG A;  4MV0 A;  2ELE A;  4H4D A;  2ED3 A;  2E16 A;  3I4T A;  3NDC A;  3NUT A;  2DSG A;  3LMM A;  2PB4 A;  2ZVB A;  2EH5 A;  4EB3 A;  2P6D A;  1WDE A;  2OWG A;  2EK4 A;  1WYZ A;  3FFY A;  2HUX A;  2P9D A;  3T0G A;  2HUQ A;  2OWK A;  3UV3 A;  1PJQ A;  1PJS A;  2HR8 A;  3KE9 A;  2E15 A;  3SZU A;  1VCE A;  3F7T A;  3ZGN A;  2DV7 A;  1PJT A;  2PCM A;  2P5F A;  4MV5 A;  2EGS A;  3UV6 A;  2ZVC A;  2DSI A;  2EGB A;  2P6K A;  2EHC A;  2BB3 A;  1VHV A;  2EMU A;  2E0N A;  3NEI A;  2PCK A;  2OWF A;  2HUT A;  2ED5 A;  2E7R A;  2E8S A;  2EJJ A;  2EH4 A;  3HH1 A;  3URK A;  2E07 A;  2P6I A;  2KYY A;  3KEM A;  2PCA A;  2EK7 A;  3KEF A;  2P6L A;  2PCI A;  3DNF A;  2EK3 A;  2E17 A;  3UTC A;  2E0K A;  2DXW A;  3KEL A;  4E16 A;  3KE8 A;  2EJK A;  2EMR A;  2P2X A;  2EJZ A;  2EL1 A;  3SZO A;  2EEQ A;  2E4N A;  2EGL A;  2YBO A;  3FQ6 A;  3ZGL A;  2EH2 A;  5HW4 A;  2DV5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3NUTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations