5HW4 | Genus

Total Genus 67

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	67
sequence length	231
structure length	228
Chain Sequence	MGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEED

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli k-12
publication title	Structural Insights into the Methylation of C1402 in 16S rRNA by Methyltransferase RsmI pubmed doi rcsb
molecule keywords	Ribosomal RNA small subunit methyltransferase I
total genus	67
structure length	228
sequence length	231
chains with identical sequence	B, C
ec nomenclature	ec 2.1.1.198: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase.
pdb deposition date	2016-01-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00590	TP_methylase	Tetrapyrrole (Corrin/Porphyrin) Methylases

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.950.10	Alpha Beta	2-Layer Sandwich	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2	5hw4A02
3.40.1010.10	Alpha Beta	3-Layer(aba) Sandwich	Cobalt-precorrin-4 Transmethylase; domain 1	Cobalt-precorrin-4 Transmethylase; Domain 1	5hw4A01

2EN5A 1VE2A 2HUXA 2P6IA 2DV3A 2EEQA 2EGBA 2EGLA 3KWPA 2EMRA 2ZVCA 2PB4A 2E8RA 2DV7A 2E8HA 2P5FA 2OWUA 2PCHA 1S4DA 2E7RA 2DSHA 2P9DA 3FFYA 2PCKA 2EH5A 5HW4A 2DXWA 2YBOA 2NPNA 1VHVA 2HUQA 3FQ6A 2EJKA 2DXXA 2EH2A 2PCMA 3NUTA 2EK2A 2P2XA 2EGSA 2EL3A 2EK4A 2YBQA 2EL0A 2E07A 2DV5A 2PCGA 1CBFA 2E15A 4E16A 2DSIA 1WYZA 2EL2A 1V9AA 2DSGA 2PCIA 1PJSA 1WDEA 2EHLA 2ELDA 2P6LA 2Z6RA 2EK7A 1WNGA 2EJJA 3I4TA 2EHCA 1PJQA 2ENIA 2EMUA 2P5CA 2OWGA 2CBFA 2DEKA 2PB6A 2ZVBA 2EK3A 2ED3A 2ED5A 2HUTA 2OWVA 2DV4A 2E16A 2P6KA 2OWFA 2E08A 2EKAA 2P6DA 3NDCA 2E8SA 2EH4A 2OWKA 2PB5A 2HR8A 2E0NA 2EJZA 2E8QA 1VCEA 2E4RA 2QBUA 3HH1A 2EL1A 2E17A 3ND1A 3NEIA 2HUVA 2BB3A 1VA0A 2E0KA 2DXVA 2ELEA 2E4NA 1PJTA 2PCAA
chains in the Genus database with same CATH superfamily

2EN5A 1VE2A 2HUXA 2P6IA 2DV3A 3KE8A 2EEQA 2EGBA 2EGLA 3KWPA 2EMRA 3KEMA 2KYYA 2ZVCA 2PB4A 2E8RA 2DV7A 2E8HA 2P5FA 2OWUA 3SZLA 2PCHA 1S4DA 4EB3A 3F7TA 2E7RA 2DSHA 2P9DA 3FFYA 2PCKA 2EH5A 4MUXA 5HW4A 2DXWA 2YBOA 2NPNA 1VHVA 2HUQA 3FQ6A 3KELA 3UV6A 2EJKA 3UTCA 2DXXA 3UV3A 3KEFA 2EH2A 2PCMA 3NUTA 2EK2A 2P2XA 3TIXB 4MV5A 3UTDA 2EGSA 2EL3A 2EK4A 2YBQA 2EL0A 2E07A 2DV5A 2PCGA 1CBFA 3KE9A 2E15A 4H4EA 4E16A 2DSIA 1WYZA 2EL2A 1V9AA 2DSGA 4H4DA 2PCIA 1PJSA 1WDEA 2EHLA 2ELDA 2P6LA 3URKA 2Z6RA 3ZGLA 2EK7A 1WNGA 2EJJA 3I4TA 2EHCA 1PJQA 2ENIA 2EMUA 4MV0A 3LMMA 2P5CA 2OWGA 4N7BA 2CBFA 2DEKA 2PB6A 2ZVBA 2EK3A 2ED3A 2ED5A 2HUTA 2OWVA 3UV7A 2DV4A 4MUYA 2E16A 2P6KA 2OWFA 2E08A 2EKAA 2P6DA 3NDCA 4H4CA 3T0GA 2E8SA 2EH4A 2OWKA 2PB5A 3ZGNA 2HR8A 2E0NA 2EJZA 2E8QA 3UWMA 1VCEA 2E4RA 2QBUA 3HH1A 2EL1A 2E17A 3ND1A 3NEIA 3SZUA 2HUVA 3SZOA 3T0FA 2BB3A 1VA0A 2E0KA 2DXVA 2ELEA 2E4NA 1PJTA 3DNFA 2PCAA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2EN5 A;  1VE2 A;  2HUX A;  2P6I A;  2DV3 A;  2EEQ A;  2EGB A;  2EGL A;  3KWP A;  2EMR A;  2ZVC A;  2PB4 A;  2E8R A;  2DV7 A;  2E8H A;  2P5F A;  2OWU A;  2PCH A;  1S4D A;  2E7R A;  2DSH A;  2P9D A;  3FFY A;  2PCK A;  2EH5 A;  5HW4 A;  2DXW A;  2YBO A;  2NPN A;  1VHV A;  2HUQ A;  3FQ6 A;  2EJK A;  2DXX A;  2EH2 A;  2PCM A;  3NUT A;  2EK2 A;  2P2X A;  2EGS A;  2EL3 A;  2EK4 A;  2YBQ A;  2EL0 A;  2E07 A;  2DV5 A;  2PCG A;  1CBF A;  2E15 A;  4E16 A;  2DSI A;  1WYZ A;  2EL2 A;  1V9A A;  2DSG A;  2PCI A;  1PJS A;  1WDE A;  2EHL A;  2ELD A;  2P6L A;  2Z6R A;  2EK7 A;  1WNG A;  2EJJ A;  3I4T A;  2EHC A;  1PJQ A;  2ENI A;  2EMU A;  2P5C A;  2OWG A;  2CBF A;  2DEK A;  2PB6 A;  2ZVB A;  2EK3 A;  2ED3 A;  2ED5 A;  2HUT A;  2OWV A;  2DV4 A;  2E16 A;  2P6K A;  2OWF A;  2E08 A;  2EKA A;  2P6D A;  3NDC A;  2E8S A;  2EH4 A;  2OWK A;  2PB5 A;  2HR8 A;  2E0N A;  2EJZ A;  2E8Q A;  1VCE A;  2E4R A;  2QBU A;  3HH1 A;  2EL1 A;  2E17 A;  3ND1 A;  3NEI A;  2HUV A;  2BB3 A;  1VA0 A;  2E0K A;  2DXV A;  2ELE A;  2E4N A;  1PJT A;  2PCA A; 
#chains in the Genus database with same CATH topology
 2EN5 A;  1VE2 A;  2HUX A;  2P6I A;  2DV3 A;  3KE8 A;  2EEQ A;  2EGB A;  2EGL A;  3KWP A;  2EMR A;  3KEM A;  2KYY A;  2ZVC A;  2PB4 A;  2E8R A;  2DV7 A;  2E8H A;  2P5F A;  2OWU A;  3SZL A;  2PCH A;  1S4D A;  4EB3 A;  3F7T A;  2E7R A;  2DSH A;  2P9D A;  3FFY A;  2PCK A;  2EH5 A;  4MUX A;  5HW4 A;  2DXW A;  2YBO A;  2NPN A;  1VHV A;  2HUQ A;  3FQ6 A;  3KEL A;  3UV6 A;  2EJK A;  3UTC A;  2DXX A;  3UV3 A;  3KEF A;  2EH2 A;  2PCM A;  3NUT A;  2EK2 A;  2P2X A;  3TIX B;  4MV5 A;  3UTD A;  2EGS A;  2EL3 A;  2EK4 A;  2YBQ A;  2EL0 A;  2E07 A;  2DV5 A;  2PCG A;  1CBF A;  3KE9 A;  2E15 A;  4H4E A;  4E16 A;  2DSI A;  1WYZ A;  2EL2 A;  1V9A A;  2DSG A;  4H4D A;  2PCI A;  1PJS A;  1WDE A;  2EHL A;  2ELD A;  2P6L A;  3URK A;  2Z6R A;  3ZGL A;  2EK7 A;  1WNG A;  2EJJ A;  3I4T A;  2EHC A;  1PJQ A;  2ENI A;  2EMU A;  4MV0 A;  3LMM A;  2P5C A;  2OWG A;  4N7B A;  2CBF A;  2DEK A;  2PB6 A;  2ZVB A;  2EK3 A;  2ED3 A;  2ED5 A;  2HUT A;  2OWV A;  3UV7 A;  2DV4 A;  4MUY A;  2E16 A;  2P6K A;  2OWF A;  2E08 A;  2EKA A;  2P6D A;  3NDC A;  4H4C A;  3T0G A;  2E8S A;  2EH4 A;  2OWK A;  2PB5 A;  3ZGN A;  2HR8 A;  2E0N A;  2EJZ A;  2E8Q A;  3UWM A;  1VCE A;  2E4R A;  2QBU A;  3HH1 A;  2EL1 A;  2E17 A;  3ND1 A;  3NEI A;  3SZU A;  2HUV A;  3SZO A;  3T0F A;  2BB3 A;  1VA0 A;  2E0K A;  2DXV A;  2ELE A;  2E4N A;  1PJT A;  3DNF A;  2PCA A; 
#chains in the Genus database with same CATH homology
 2EN5 A;  1VE2 A;  2HUX A;  2P6I A;  2DV3 A;  3KE8 A;  2EEQ A;  2EGB A;  2EGL A;  3KWP A;  2EMR A;  3KEM A;  2KYY A;  2ZVC A;  2PB4 A;  2E8R A;  2DV7 A;  2E8H A;  2P5F A;  2OWU A;  3SZL A;  2PCH A;  1S4D A;  4EB3 A;  3F7T A;  2E7R A;  2DSH A;  2P9D A;  3FFY A;  2PCK A;  2EH5 A;  4MUX A;  5HW4 A;  2DXW A;  2YBO A;  2NPN A;  1VHV A;  2HUQ A;  3FQ6 A;  3KEL A;  3UV6 A;  2EJK A;  3UTC A;  2DXX A;  3UV3 A;  3KEF A;  2EH2 A;  2PCM A;  3NUT A;  2EK2 A;  2P2X A;  3TIX B;  4MV5 A;  3UTD A;  2EGS A;  2EL3 A;  2EK4 A;  2YBQ A;  2EL0 A;  2E07 A;  2DV5 A;  2PCG A;  1CBF A;  3KE9 A;  2E15 A;  4H4E A;  4E16 A;  2DSI A;  1WYZ A;  2EL2 A;  1V9A A;  2DSG A;  4H4D A;  2PCI A;  1PJS A;  1WDE A;  2EHL A;  2ELD A;  2P6L A;  3URK A;  2Z6R A;  3ZGL A;  2EK7 A;  1WNG A;  2EJJ A;  3I4T A;  2EHC A;  1PJQ A;  2ENI A;  2EMU A;  4MV0 A;  3LMM A;  2P5C A;  2OWG A;  4N7B A;  2CBF A;  2DEK A;  2PB6 A;  2ZVB A;  2EK3 A;  2ED3 A;  2ED5 A;  2HUT A;  2OWV A;  3UV7 A;  2DV4 A;  4MUY A;  2E16 A;  2P6K A;  2OWF A;  2E08 A;  2EKA A;  2P6D A;  3NDC A;  4H4C A;  3T0G A;  2E8S A;  2EH4 A;  2OWK A;  2PB5 A;  3ZGN A;  2HR8 A;  2E0N A;  2EJZ A;  2E8Q A;  3UWM A;  1VCE A;  2E4R A;  2QBU A;  3HH1 A;  2EL1 A;  2E17 A;  3ND1 A;  3NEI A;  3SZU A;  2HUV A;  3SZO A;  3T0F A;  2BB3 A;  1VA0 A;  2E0K A;  2DXV A;  2ELE A;  2E4N A;  1PJT A;  3DNF A;  2PCA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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5HW4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations