1NS5A

X-ray structure of ybea from e.coli. northeast structural genomics research consortium (nesg) target er45
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
Knots found
sequence length
153
structure length
153
Chain Sequence
MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein ybeA
publication title Structure of YBEA from E. coli
rcsb
source organism Escherichia coli
total genus 50
structure length 153
sequence length 153
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.177: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase.
pdb deposition date 2003-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02590 SPOUT_MTase Predicted SPOUT methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1ns5A00
3AIAA 3BBDA 1Z85A 1J85A 4YQ5A 4J3CA 4L69A 3IEFA 3N4JA 4MCCA 2HA8A 4X3MA 1P9PA 3GYQA 4YQPA 1K3RA 1TO0A 3IC6A 4CNEA 2I6DA 4JALA 2Z0YA 3AI9X 1O6DA 3KW2A 1X7OA 1NS5A 1VH0A 4YQ3A 1NXZA 1VHYA 1UAMA 4X3LA 4YPWA 4YQLA 4YQIA 3KY7A 3OIIA 3E5YA 3OIJA 1MXIA 4YPXA 4MCDA 4JAKA 4YQNA 4YVHA 4YQ6A 1UAKA 2EGWA 1GZ0A 4YQ7A 4YVKA 3L8UA 3NK6A 5CO4A 2YY8A 4PZKA 1OY5A 1V2XA 4CNGA 4YVJA 1UAJA 4YPZA 5D9FA 4YQGA 4E8BA 2QWVA 3BBHA 1ZJRA 5GM8A 4YQ0A 4YQDA 4XBOA 4KDZA 4YQ9A 4YQSA 4KGNA 5GMBA 2O3AA 4YVGA 4YQ2A 2V3KA 4FAKA 2V3JA 4YQ8A 4YQ1A 4YVIA 3NK7A 4CNDA 3OINA 4YQBA 5FAIA 3QUVA 4YQCA 2CX8A 3AXZA 1V6ZA 4RG1A 3KTYA 1IPAA 4MCBA 4YQRA 4YQAA 1X7PA 2QMMA 4YQJA 3KNUA 3ILKA 4H3ZA 3ONPA 2EGVA 4YQQA 4H3YA 3DCMX 3O7BA 4YQOA 4YQTA 4YQ4A 1UALA 4YQKA 1VHKA 3N4KA 3BBEA 5GMCA 4IG6A 4CNFA 4YPYA
chains in the Genus database with same CATH superfamily
4JWFA 3AIAA 3BBDA 1Z85A 1J85A 4YQ5A 4J3CA 4L69A 3IEFA 3N4JA 4MCCA 2HA8A 4X3MA 1P9PA 3GYQA 4YQPA 1K3RA 1TO0A 3IC6A 4CNEA 2I6DA 4JALA 2Z0YA 3AI9X 1O6DA 3KW2A 1X7OA 1NS5A 1VH0A 4YQ3A 1NXZA 1VHYA 1UAMA 4X3LA 4YPWA 4YQLA 4YQIA 4FMWA 3KY7A 3OIIA 3E5YA 3OIJA 1MXIA 4YPXA 4MCDA 4JAKA 4YQNA 4YVHA 4YQ6A 1UAKA 2EGWA 1GZ0A 4YQ7A 4YVKA 3L8UA 3NK6A 4JWHA 5CO4A 2YY8A 4PZKA 1OY5A 1V2XA 4CNGA 4YVJA 1UAJA 4YPZA 5D9FA 4YQGA 4E8BA 2QWVA 3BBHA 1ZJRA 5GM8A 4YQ0A 4YQDA 4XBOA 4KDZA 4YQ9A 4YQSA 4KGNA 5GMBA 2O3AA 4YVGA 4YQ2A 2V3KA 4FAKA 2V3JA 4YQ8A 4YQ1A 4YVIA 3NK7A 4CNDA 3OINA 4YQBA 5FAIA 3QUVA 4YQCA 2CX8A 3AXZA 1V6ZA 4RG1A 3KTYA 1IPAA 4MCBA 4YQRA 4YQAA 1X7PA 2QMMA 4YQJA 3KNUA 3ILKA 4H3ZA 4JWJA 3ONPA 2EGVA 4YQQA 4H3YA 3DCMX 3O7BA 4YQOA 4YQTA 4YQ4A 1UALA 4YQKA 1VHKA 3N4KA 3BBEA 5GMCA 4JWGA 4IG6A 4CNFA 4YPYA
chains in the Genus database with same CATH topology
4JWFA 3AIAA 3BBDA 1Z85A 1J85A 4YQ5A 4J3CA 4L69A 3IEFA 3N4JA 4MCCA 2HA8A 4X3MA 1P9PA 3GYQA 4YQPA 1K3RA 1TO0A 3IC6A 4CNEA 2I6DA 4JALA 2Z0YA 3AI9X 1O6DA 3KW2A 1X7OA 1NS5A 1VH0A 4YQ3A 1NXZA 1VHYA 1UAMA 4X3LA 4YPWA 4YQLA 4YQIA 4FMWA 3KY7A 3OIIA 3E5YA 3OIJA 1MXIA 4YPXA 4MCDA 4JAKA 4YQNA 4YVHA 4YQ6A 1UAKA 2EGWA 1GZ0A 4YQ7A 4YVKA 3L8UA 3NK6A 4JWHA 5CO4A 2YY8A 4PZKA 1OY5A 1V2XA 4CNGA 4YVJA 1UAJA 4YPZA 5D9FA 4YQGA 4E8BA 2QWVA 3BBHA 1ZJRA 5GM8A 4YQ0A 4YQDA 4XBOA 4KDZA 4YQ9A 4YQSA 4KGNA 5GMBA 2O3AA 4YVGA 4YQ2A 2V3KA 4FAKA 2V3JA 4YQ8A 4YQ1A 4YVIA 3NK7A 4CNDA 3OINA 4YQBA 5FAIA 3QUVA 4YQCA 2CX8A 3AXZA 1V6ZA 4RG1A 3KTYA 1IPAA 4MCBA 4YQRA 4YQAA 1X7PA 2QMMA 4YQJA 3KNUA 3ILKA 4H3ZA 4JWJA 3ONPA 2EGVA 4YQQA 4H3YA 3DCMX 3O7BA 4YQOA 4YQTA 4YQ4A 1UALA 4YQKA 1VHKA 3N4KA 3BBEA 5GMCA 4JWGA 4IG6A 4CNFA 4YPYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AIA A;  3BBD A;  1Z85 A;  1J85 A;  4YQ5 A;  4J3C A;  4L69 A;  3IEF A;  3N4J A;  4MCC A;  2HA8 A;  4X3M A;  1P9P A;  3GYQ A;  4YQP A;  1K3R A;  1TO0 A;  3IC6 A;  4CNE A;  2I6D A;  4JAL A;  2Z0Y A;  3AI9 X;  1O6D A;  3KW2 A;  1X7O A;  1NS5 A;  1VH0 A;  4YQ3 A;  1NXZ A;  1VHY A;  1UAM A;  4X3L A;  4YPW A;  4YQL A;  4YQI A;  3KY7 A;  3OII A;  3E5Y A;  3OIJ A;  1MXI A;  4YPX A;  4MCD A;  4JAK A;  4YQN A;  4YVH A;  4YQ6 A;  1UAK A;  2EGW A;  1GZ0 A;  4YQ7 A;  4YVK A;  3L8U A;  3NK6 A;  5CO4 A;  2YY8 A;  4PZK A;  1OY5 A;  1V2X A;  4CNG A;  4YVJ A;  1UAJ A;  4YPZ A;  5D9F A;  4YQG A;  4E8B A;  2QWV A;  3BBH A;  1ZJR A;  5GM8 A;  4YQ0 A;  4YQD A;  4XBO A;  4KDZ A;  4YQ9 A;  4YQS A;  4KGN A;  5GMB A;  2O3A A;  4YVG A;  4YQ2 A;  2V3K A;  4FAK A;  2V3J A;  4YQ8 A;  4YQ1 A;  4YVI A;  3NK7 A;  4CND A;  3OIN A;  4YQB A;  5FAI A;  3QUV A;  4YQC A;  2CX8 A;  3AXZ A;  1V6Z A;  4RG1 A;  3KTY A;  1IPA A;  4MCB A;  4YQR A;  4YQA A;  1X7P A;  2QMM A;  4YQJ A;  3KNU A;  3ILK A;  4H3Z A;  3ONP A;  2EGV A;  4YQQ A;  4H3Y A;  3DCM X;  3O7B A;  4YQO A;  4YQT A;  4YQ4 A;  1UAL A;  4YQK A;  1VHK A;  3N4K A;  3BBE A;  5GMC A;  4IG6 A;  4CNF A;  4YPY A; 
#chains in the Genus database with same CATH topology
 4JWF A;  3AIA A;  3BBD A;  1Z85 A;  1J85 A;  4YQ5 A;  4J3C A;  4L69 A;  3IEF A;  3N4J A;  4MCC A;  2HA8 A;  4X3M A;  1P9P A;  3GYQ A;  4YQP A;  1K3R A;  1TO0 A;  3IC6 A;  4CNE A;  2I6D A;  4JAL A;  2Z0Y A;  3AI9 X;  1O6D A;  3KW2 A;  1X7O A;  1NS5 A;  1VH0 A;  4YQ3 A;  1NXZ A;  1VHY A;  1UAM A;  4X3L A;  4YPW A;  4YQL A;  4YQI A;  4FMW A;  3KY7 A;  3OII A;  3E5Y A;  3OIJ A;  1MXI A;  4YPX A;  4MCD A;  4JAK A;  4YQN A;  4YVH A;  4YQ6 A;  1UAK A;  2EGW A;  1GZ0 A;  4YQ7 A;  4YVK A;  3L8U A;  3NK6 A;  4JWH A;  5CO4 A;  2YY8 A;  4PZK A;  1OY5 A;  1V2X A;  4CNG A;  4YVJ A;  1UAJ A;  4YPZ A;  5D9F A;  4YQG A;  4E8B A;  2QWV A;  3BBH A;  1ZJR A;  5GM8 A;  4YQ0 A;  4YQD A;  4XBO A;  4KDZ A;  4YQ9 A;  4YQS A;  4KGN A;  5GMB A;  2O3A A;  4YVG A;  4YQ2 A;  2V3K A;  4FAK A;  2V3J A;  4YQ8 A;  4YQ1 A;  4YVI A;  3NK7 A;  4CND A;  3OIN A;  4YQB A;  5FAI A;  3QUV A;  4YQC A;  2CX8 A;  3AXZ A;  1V6Z A;  4RG1 A;  3KTY A;  1IPA A;  4MCB A;  4YQR A;  4YQA A;  1X7P A;  2QMM A;  4YQJ A;  3KNU A;  3ILK A;  4H3Z A;  4JWJ A;  3ONP A;  2EGV A;  4YQQ A;  4H3Y A;  3DCM X;  3O7B A;  4YQO A;  4YQT A;  4YQ4 A;  1UAL A;  4YQK A;  1VHK A;  3N4K A;  3BBE A;  5GMC A;  4JWG A;  4IG6 A;  4CNF A;  4YPY A; 
#chains in the Genus database with same CATH homology
 4JWF A;  3AIA A;  3BBD A;  1Z85 A;  1J85 A;  4YQ5 A;  4J3C A;  4L69 A;  3IEF A;  3N4J A;  4MCC A;  2HA8 A;  4X3M A;  1P9P A;  3GYQ A;  4YQP A;  1K3R A;  1TO0 A;  3IC6 A;  4CNE A;  2I6D A;  4JAL A;  2Z0Y A;  3AI9 X;  1O6D A;  3KW2 A;  1X7O A;  1NS5 A;  1VH0 A;  4YQ3 A;  1NXZ A;  1VHY A;  1UAM A;  4X3L A;  4YPW A;  4YQL A;  4YQI A;  4FMW A;  3KY7 A;  3OII A;  3E5Y A;  3OIJ A;  1MXI A;  4YPX A;  4MCD A;  4JAK A;  4YQN A;  4YVH A;  4YQ6 A;  1UAK A;  2EGW A;  1GZ0 A;  4YQ7 A;  4YVK A;  3L8U A;  3NK6 A;  4JWH A;  5CO4 A;  2YY8 A;  4PZK A;  1OY5 A;  1V2X A;  4CNG A;  4YVJ A;  1UAJ A;  4YPZ A;  5D9F A;  4YQG A;  4E8B A;  2QWV A;  3BBH A;  1ZJR A;  5GM8 A;  4YQ0 A;  4YQD A;  4XBO A;  4KDZ A;  4YQ9 A;  4YQS A;  4KGN A;  5GMB A;  2O3A A;  4YVG A;  4YQ2 A;  2V3K A;  4FAK A;  2V3J A;  4YQ8 A;  4YQ1 A;  4YVI A;  3NK7 A;  4CND A;  3OIN A;  4YQB A;  5FAI A;  3QUV A;  4YQC A;  2CX8 A;  3AXZ A;  1V6Z A;  4RG1 A;  3KTY A;  1IPA A;  4MCB A;  4YQR A;  4YQA A;  1X7P A;  2QMM A;  4YQJ A;  3KNU A;  3ILK A;  4H3Z A;  4JWJ A;  3ONP A;  2EGV A;  4YQQ A;  4H3Y A;  3DCM X;  3O7B A;  4YQO A;  4YQT A;  4YQ4 A;  1UAL A;  4YQK A;  1VHK A;  3N4K A;  3BBE A;  5GMC A;  4JWG A;  4IG6 A;  4CNF A;  4YPY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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