The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
50
|
Knots found |
|
sequence length |
153
|
structure length |
153
|
Chain Sequence |
MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of YBEA from E. coli
rcsb |
| molecule keywords |
Hypothetical protein ybeA
|
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Escherichia coli
|
| total genus |
50
|
| structure length |
153
|
| sequence length |
153
|
| chains with identical sequence |
B
|
| other databases |
 KnotProt 2.0: K +31
|
| ec nomenclature |
ec
2.1.1.177: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase. |
| pdb deposition date | 2003-01-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02590 | SPOUT_MTase | Predicted SPOUT methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the Genus database with same CATH superfamily 3E5Y A; 1NXZ A; 1X7O A; 1OY5 A; 1UAK A; 3KTY A; 3L8U A; 4YQ3 A; 4YQ0 A; 3N4K A; 4YVG A; 5GMB A; 1VHY A; 1UAM A; 3N4J A; 5D9F A; 1UAJ A; 4CNG A; 4J3C A; 4L69 A; 2QMM A; 2V3J A; 3OIN A; 4MCD A; 4YQ7 A; 3NK7 A; 1GZ0 A; 3BBD A; 4KDZ A; 2EGV A; 4YQG A; 1UAL A; 1Z85 A; 4YQJ A; 4JAK A; 2O3A A; 4YQ1 A; 4YVK A; 3KNU A; 4PZK A; 5CO4 A; 4RG1 A; 4YVJ A; 4CNE A; 4YQO A; 1VH0 A; 3OII A; 1MXI A; 4MCB A; 1V2X A; 4FAK A; 4YPX A; 4YQ4 A; 4YQ2 A; 2HA8 A; 3AI9 X; 4YQI A; 4YQP A; 1IPA A; 3O7B A; 4YVI A; 4X3L A; 4KGN A; 2YY8 A; 4CNF A; 4YQD A; 4YQC A; 4IG6 A; 3ONP A; 5FAI A; 4JAL A; 3GYQ A; 4YQ9 A; 3KW2 A; 4YQ5 A; 2Z0Y A; 4YQ6 A; 3NK6 A; 3DCM X; 4H3Y A; 2I6D A; 4H3Z A; 4YPY A; 1P9P A; 3BBH A; 1K3R A; 3KY7 A; 4YQA A; 4XBO A; 3AXZ A; 3AIA A; 5GM8 A; 1J85 A; 1ZJR A; 1V6Z A; 4CND A; 3IEF A; 4YQR A; 4MCC A; 4YQ8 A; 4E8B A; 1VHK A; 3QUV A; 1TO0 A; 1NS5 A; 4YPZ A; 3OIJ A; 1X7P A; 3IC6 A; 4X3M A; 4YQQ A; 4YPW A; 4YQS A; 2CX8 A; 4YQN A; 2EGW A; 4YQB A; 5GMC A; 1O6D A; 4YQK A; 3BBE A; 4YVH A; 3ILK A; 4YQL A; 2QWV A; 2V3K A; 4YQT A; #chains in the Genus database with same CATH topology 3E5Y A; 1NXZ A; 1X7O A; 4JWJ A; 1OY5 A; 1UAK A; 3KTY A; 3L8U A; 4YQ3 A; 4YQ0 A; 3N4K A; 4YVG A; 5GMB A; 1VHY A; 1UAM A; 3N4J A; 5D9F A; 1UAJ A; 4CNG A; 4JWH A; 4J3C A; 4L69 A; 2QMM A; 2V3J A; 3OIN A; 4MCD A; 4YQ7 A; 3NK7 A; 1GZ0 A; 3BBD A; 4KDZ A; 2EGV A; 4YQG A; 1UAL A; 1Z85 A; 4YQJ A; 4JAK A; 2O3A A; 4YQ1 A; 4YVK A; 3KNU A; 4PZK A; 5CO4 A; 4RG1 A; 4YVJ A; 4CNE A; 4YQO A; 1VH0 A; 3OII A; 4JWF A; 1MXI A; 4MCB A; 1V2X A; 4FAK A; 4YPX A; 4YQ4 A; 4YQ2 A; 2HA8 A; 3AI9 X; 4YQI A; 4YQP A; 1IPA A; 3O7B A; 4YVI A; 4X3L A; 4KGN A; 2YY8 A; 4CNF A; 4YQD A; 4YQC A; 4IG6 A; 3ONP A; 5FAI A; 4JAL A; 3GYQ A; 4YQ9 A; 3KW2 A; 4YQ5 A; 2Z0Y A; 4YQ6 A; 3NK6 A; 3DCM X; 4H3Y A; 2I6D A; 4H3Z A; 4YPY A; 1P9P A; 3BBH A; 1K3R A; 3KY7 A; 4YQA A; 4XBO A; 3AXZ A; 3AIA A; 5GM8 A; 1J85 A; 1ZJR A; 1V6Z A; 4CND A; 3IEF A; 4YQR A; 4MCC A; 4YQ8 A; 4E8B A; 1VHK A; 3QUV A; 1TO0 A; 1NS5 A; 4YPZ A; 3OIJ A; 1X7P A; 3IC6 A; 4X3M A; 4YQQ A; 4YPW A; 4YQS A; 2CX8 A; 4YQN A; 2EGW A; 4JWG A; 4YQB A; 4FMW A; 5GMC A; 1O6D A; 4YQK A; 3BBE A; 4YVH A; 3ILK A; 4YQL A; 2QWV A; 2V3K A; 4YQT A; #chains in the Genus database with same CATH homology 3E5Y A; 1NXZ A; 1X7O A; 4JWJ A; 1OY5 A; 1UAK A; 3KTY A; 3L8U A; 4YQ3 A; 4YQ0 A; 3N4K A; 4YVG A; 5GMB A; 1VHY A; 1UAM A; 3N4J A; 5D9F A; 1UAJ A; 4CNG A; 4JWH A; 4J3C A; 4L69 A; 2QMM A; 2V3J A; 3OIN A; 4MCD A; 4YQ7 A; 3NK7 A; 1GZ0 A; 3BBD A; 4KDZ A; 2EGV A; 4YQG A; 1UAL A; 1Z85 A; 4YQJ A; 4JAK A; 2O3A A; 4YQ1 A; 4YVK A; 3KNU A; 4PZK A; 5CO4 A; 4RG1 A; 4YVJ A; 4CNE A; 4YQO A; 1VH0 A; 3OII A; 4JWF A; 1MXI A; 4MCB A; 1V2X A; 4FAK A; 4YPX A; 4YQ4 A; 4YQ2 A; 2HA8 A; 3AI9 X; 4YQI A; 4YQP A; 1IPA A; 3O7B A; 4YVI A; 4X3L A; 4KGN A; 2YY8 A; 4CNF A; 4YQD A; 4YQC A; 4IG6 A; 3ONP A; 5FAI A; 4JAL A; 3GYQ A; 4YQ9 A; 3KW2 A; 4YQ5 A; 2Z0Y A; 4YQ6 A; 3NK6 A; 3DCM X; 4H3Y A; 2I6D A; 4H3Z A; 4YPY A; 1P9P A; 3BBH A; 1K3R A; 3KY7 A; 4YQA A; 4XBO A; 3AXZ A; 3AIA A; 5GM8 A; 1J85 A; 1ZJR A; 1V6Z A; 4CND A; 3IEF A; 4YQR A; 4MCC A; 4YQ8 A; 4E8B A; 1VHK A; 3QUV A; 1TO0 A; 1NS5 A; 4YPZ A; 3OIJ A; 1X7P A; 3IC6 A; 4X3M A; 4YQQ A; 4YPW A; 4YQS A; 2CX8 A; 4YQN A; 2EGW A; 4JWG A; 4YQB A; 4FMW A; 5GMC A; 1O6D A; 4YQK A; 3BBE A; 4YVH A; 3ILK A; 4YQL A; 2QWV A; 2V3K A; 4YQT A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
