3N4JA

Putative rna methyltransferase from yersinia pestis
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
Knots found
sequence length
161
structure length
161
Chain Sequence
AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords RNA methyltransferase
publication title X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
rcsb
source organism Yersinia pestis
molecule tags Transferase
total genus 52
structure length 161
sequence length 161
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2010-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3n4jA00
4E8BA 1O6DA 4CNDA 1MXIA 4YQOA 3OINA 4JAKA 4YQRA 4YQPA 3IEFA 3N4JA 4L69A 4YQBA 1V6ZA 1NS5A 4X3LA 4YVIA 4YQ3A 3AI9X 4YQ6A 5GM8A 1NXZA 4YQQA 4KGNA 1K3RA 3E5YA 2V3JA 2O3AA 5GMCA 3ONPA 1P9PA 4MCDA 4YQ8A 3AIAA 1UALA 1J85A 3BBDA 4YQTA 4X3MA 1Z85A 4YQ1A 4YVHA 3O7BA 3KW2A 1VHYA 4YQAA 2YY8A 3BBEA 4CNGA 3AXZA 3KNUA 1UAJA 1X7OA 2I6DA 3BBHA 4XBOA 4YQKA 4IG6A 3L8UA 1UAMA 2CX8A 3KTYA 5D9FA 4MCCA 1V2XA 4YQLA 3ILKA 3QUVA 3IC6A 5GMBA 1VHKA 3OIJA 4YQCA 4MCBA 1UAKA 4KDZA 4YQ2A 3NK6A 4YPYA 4YQ7A 4YQJA 2QWVA 2Z0YA 4YQ0A 4JALA 4YQNA 2EGVA 4YQGA 4YPWA 2QMMA 4RG1A 4CNFA 1IPAA 3DCMX 4H3YA 1GZ0A 4YQ4A 4H3ZA 2V3KA 4PZKA 4YQDA 3N4KA 1TO0A 4YPZA 4YVJA 3KY7A 3GYQA 5FAIA 1OY5A 5CO4A 1VH0A 4YQSA 4FAKA 1X7PA 4CNEA 1ZJRA 4J3CA 4YQ9A 2EGWA 4YVGA 4YQIA 2HA8A 4YQ5A 3OIIA 4YPXA 3NK7A 4YVKA
chains in the Genus database with same CATH superfamily
4E8BA 1O6DA 4CNDA 1MXIA 4YQOA 3OINA 4JAKA 4YQRA 4YQPA 3IEFA 3N4JA 4L69A 4YQBA 1V6ZA 1NS5A 4X3LA 4JWJA 4YVIA 4YQ3A 3AI9X 4YQ6A 5GM8A 1NXZA 4YQQA 4KGNA 1K3RA 3E5YA 2V3JA 2O3AA 5GMCA 3ONPA 1P9PA 4MCDA 4YQ8A 3AIAA 1UALA 1J85A 3BBDA 4YQTA 4X3MA 1Z85A 4YQ1A 4YVHA 3O7BA 3KW2A 1VHYA 4YQAA 2YY8A 3BBEA 4CNGA 3AXZA 3KNUA 1UAJA 1X7OA 2I6DA 3BBHA 4XBOA 4FMWA 4YQKA 4IG6A 3L8UA 1UAMA 2CX8A 3KTYA 5D9FA 4MCCA 1V2XA 4YQLA 3ILKA 3QUVA 3IC6A 5GMBA 1VHKA 3OIJA 4YQCA 4MCBA 1UAKA 4KDZA 4YQ2A 3NK6A 4YPYA 4JWGA 4YQ7A 4YQJA 2QWVA 2Z0YA 4YQ0A 4JALA 4YQNA 2EGVA 4YQGA 4YPWA 4JWFA 2QMMA 4RG1A 4CNFA 1IPAA 3DCMX 4H3YA 1GZ0A 4YQ4A 4H3ZA 2V3KA 4PZKA 4YQDA 3N4KA 1TO0A 4YPZA 4YVJA 3KY7A 3GYQA 5FAIA 1OY5A 5CO4A 1VH0A 4YQSA 4FAKA 1X7PA 4CNEA 1ZJRA 4JWHA 4J3CA 4YQ9A 2EGWA 4YVGA 4YQIA 2HA8A 4YQ5A 3OIIA 4YPXA 3NK7A 4YVKA
chains in the Genus database with same CATH topology
4E8BA 1O6DA 4CNDA 1MXIA 4YQOA 3OINA 4JAKA 4YQRA 4YQPA 3IEFA 3N4JA 4L69A 4YQBA 1V6ZA 1NS5A 4X3LA 4JWJA 4YVIA 4YQ3A 3AI9X 4YQ6A 5GM8A 1NXZA 4YQQA 4KGNA 1K3RA 3E5YA 2V3JA 2O3AA 5GMCA 3ONPA 1P9PA 4MCDA 4YQ8A 3AIAA 1UALA 1J85A 3BBDA 4YQTA 4X3MA 1Z85A 4YQ1A 4YVHA 3O7BA 3KW2A 1VHYA 4YQAA 2YY8A 3BBEA 4CNGA 3AXZA 3KNUA 1UAJA 1X7OA 2I6DA 3BBHA 4XBOA 4FMWA 4YQKA 4IG6A 3L8UA 1UAMA 2CX8A 3KTYA 5D9FA 4MCCA 1V2XA 4YQLA 3ILKA 3QUVA 3IC6A 5GMBA 1VHKA 3OIJA 4YQCA 4MCBA 1UAKA 4KDZA 4YQ2A 3NK6A 4YPYA 4JWGA 4YQ7A 4YQJA 2QWVA 2Z0YA 4YQ0A 4JALA 4YQNA 2EGVA 4YQGA 4YPWA 4JWFA 2QMMA 4RG1A 4CNFA 1IPAA 3DCMX 4H3YA 1GZ0A 4YQ4A 4H3ZA 2V3KA 4PZKA 4YQDA 3N4KA 1TO0A 4YPZA 4YVJA 3KY7A 3GYQA 5FAIA 1OY5A 5CO4A 1VH0A 4YQSA 4FAKA 1X7PA 4CNEA 1ZJRA 4JWHA 4J3CA 4YQ9A 2EGWA 4YVGA 4YQIA 2HA8A 4YQ5A 3OIIA 4YPXA 3NK7A 4YVKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E8B A;  1O6D A;  4CND A;  1MXI A;  4YQO A;  3OIN A;  4JAK A;  4YQR A;  4YQP A;  3IEF A;  3N4J A;  4L69 A;  4YQB A;  1V6Z A;  1NS5 A;  4X3L A;  4YVI A;  4YQ3 A;  3AI9 X;  4YQ6 A;  5GM8 A;  1NXZ A;  4YQQ A;  4KGN A;  1K3R A;  3E5Y A;  2V3J A;  2O3A A;  5GMC A;  3ONP A;  1P9P A;  4MCD A;  4YQ8 A;  3AIA A;  1UAL A;  1J85 A;  3BBD A;  4YQT A;  4X3M A;  1Z85 A;  4YQ1 A;  4YVH A;  3O7B A;  3KW2 A;  1VHY A;  4YQA A;  2YY8 A;  3BBE A;  4CNG A;  3AXZ A;  3KNU A;  1UAJ A;  1X7O A;  2I6D A;  3BBH A;  4XBO A;  4YQK A;  4IG6 A;  3L8U A;  1UAM A;  2CX8 A;  3KTY A;  5D9F A;  4MCC A;  1V2X A;  4YQL A;  3ILK A;  3QUV A;  3IC6 A;  5GMB A;  1VHK A;  3OIJ A;  4YQC A;  4MCB A;  1UAK A;  4KDZ A;  4YQ2 A;  3NK6 A;  4YPY A;  4YQ7 A;  4YQJ A;  2QWV A;  2Z0Y A;  4YQ0 A;  4JAL A;  4YQN A;  2EGV A;  4YQG A;  4YPW A;  2QMM A;  4RG1 A;  4CNF A;  1IPA A;  3DCM X;  4H3Y A;  1GZ0 A;  4YQ4 A;  4H3Z A;  2V3K A;  4PZK A;  4YQD A;  3N4K A;  1TO0 A;  4YPZ A;  4YVJ A;  3KY7 A;  3GYQ A;  5FAI A;  1OY5 A;  5CO4 A;  1VH0 A;  4YQS A;  4FAK A;  1X7P A;  4CNE A;  1ZJR A;  4J3C A;  4YQ9 A;  2EGW A;  4YVG A;  4YQI A;  2HA8 A;  4YQ5 A;  3OII A;  4YPX A;  3NK7 A;  4YVK A; 
#chains in the Genus database with same CATH topology
 4E8B A;  1O6D A;  4CND A;  1MXI A;  4YQO A;  3OIN A;  4JAK A;  4YQR A;  4YQP A;  3IEF A;  3N4J A;  4L69 A;  4YQB A;  1V6Z A;  1NS5 A;  4X3L A;  4JWJ A;  4YVI A;  4YQ3 A;  3AI9 X;  4YQ6 A;  5GM8 A;  1NXZ A;  4YQQ A;  4KGN A;  1K3R A;  3E5Y A;  2V3J A;  2O3A A;  5GMC A;  3ONP A;  1P9P A;  4MCD A;  4YQ8 A;  3AIA A;  1UAL A;  1J85 A;  3BBD A;  4YQT A;  4X3M A;  1Z85 A;  4YQ1 A;  4YVH A;  3O7B A;  3KW2 A;  1VHY A;  4YQA A;  2YY8 A;  3BBE A;  4CNG A;  3AXZ A;  3KNU A;  1UAJ A;  1X7O A;  2I6D A;  3BBH A;  4XBO A;  4FMW A;  4YQK A;  4IG6 A;  3L8U A;  1UAM A;  2CX8 A;  3KTY A;  5D9F A;  4MCC A;  1V2X A;  4YQL A;  3ILK A;  3QUV A;  3IC6 A;  5GMB A;  1VHK A;  3OIJ A;  4YQC A;  4MCB A;  1UAK A;  4KDZ A;  4YQ2 A;  3NK6 A;  4YPY A;  4JWG A;  4YQ7 A;  4YQJ A;  2QWV A;  2Z0Y A;  4YQ0 A;  4JAL A;  4YQN A;  2EGV A;  4YQG A;  4YPW A;  4JWF A;  2QMM A;  4RG1 A;  4CNF A;  1IPA A;  3DCM X;  4H3Y A;  1GZ0 A;  4YQ4 A;  4H3Z A;  2V3K A;  4PZK A;  4YQD A;  3N4K A;  1TO0 A;  4YPZ A;  4YVJ A;  3KY7 A;  3GYQ A;  5FAI A;  1OY5 A;  5CO4 A;  1VH0 A;  4YQS A;  4FAK A;  1X7P A;  4CNE A;  1ZJR A;  4JWH A;  4J3C A;  4YQ9 A;  2EGW A;  4YVG A;  4YQI A;  2HA8 A;  4YQ5 A;  3OII A;  4YPX A;  3NK7 A;  4YVK A; 
#chains in the Genus database with same CATH homology
 4E8B A;  1O6D A;  4CND A;  1MXI A;  4YQO A;  3OIN A;  4JAK A;  4YQR A;  4YQP A;  3IEF A;  3N4J A;  4L69 A;  4YQB A;  1V6Z A;  1NS5 A;  4X3L A;  4JWJ A;  4YVI A;  4YQ3 A;  3AI9 X;  4YQ6 A;  5GM8 A;  1NXZ A;  4YQQ A;  4KGN A;  1K3R A;  3E5Y A;  2V3J A;  2O3A A;  5GMC A;  3ONP A;  1P9P A;  4MCD A;  4YQ8 A;  3AIA A;  1UAL A;  1J85 A;  3BBD A;  4YQT A;  4X3M A;  1Z85 A;  4YQ1 A;  4YVH A;  3O7B A;  3KW2 A;  1VHY A;  4YQA A;  2YY8 A;  3BBE A;  4CNG A;  3AXZ A;  3KNU A;  1UAJ A;  1X7O A;  2I6D A;  3BBH A;  4XBO A;  4FMW A;  4YQK A;  4IG6 A;  3L8U A;  1UAM A;  2CX8 A;  3KTY A;  5D9F A;  4MCC A;  1V2X A;  4YQL A;  3ILK A;  3QUV A;  3IC6 A;  5GMB A;  1VHK A;  3OIJ A;  4YQC A;  4MCB A;  1UAK A;  4KDZ A;  4YQ2 A;  3NK6 A;  4YPY A;  4JWG A;  4YQ7 A;  4YQJ A;  2QWV A;  2Z0Y A;  4YQ0 A;  4JAL A;  4YQN A;  2EGV A;  4YQG A;  4YPW A;  4JWF A;  2QMM A;  4RG1 A;  4CNF A;  1IPA A;  3DCM X;  4H3Y A;  1GZ0 A;  4YQ4 A;  4H3Z A;  2V3K A;  4PZK A;  4YQD A;  3N4K A;  1TO0 A;  4YPZ A;  4YVJ A;  3KY7 A;  3GYQ A;  5FAI A;  1OY5 A;  5CO4 A;  1VH0 A;  4YQS A;  4FAK A;  1X7P A;  4CNE A;  1ZJR A;  4JWH A;  4J3C A;  4YQ9 A;  2EGW A;  4YVG A;  4YQI A;  2HA8 A;  4YQ5 A;  3OII A;  4YPX A;  3NK7 A;  4YVK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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