3N4JA

Putative rna methyltransferase from yersinia pestis
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
Knots found
sequence length
161
structure length
161
Chain Sequence
b'AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords RNA methyltransferase
publication title X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
rcsb
source organism Yersinia pestis
molecule tags Transferase
total genus 52
structure length 161
sequence length 161
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2010-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3n4jA00
2HA8A 4YQPA 4YQ0A 3NK6A 4MCDA 2EGWA 1V2XA 4J3CA 1VHKA 4YQ1A 4L69A 4YVKA 3DCMX 1J85A 1MXIA 4YQAA 4YQQA 4E8BA 5FAIA 1VH0A 1TO0A 4YQOA 1NXZA 4YQJA 5GM8A 3ILKA 3OINA 4YQ9A 3AIAA 4MCBA 4YPWA 5GMBA 3N4JA 4YVIA 3E5YA 4YQBA 4JALA 4KGNA 4YQ7A 4YQIA 4YQKA 4YQNA 3KW2A 4YQ2A 4CNFA 3BBEA 4YQ8A 3AXZA 4CNGA 2EGVA 5CO4A 4YQSA 2CX8A 4YQTA 1X7OA 3N4KA 4YQDA 3OIIA 4X3MA 4CNDA 4YQGA 4IG6A 1GZ0A 2O3AA 4FAKA 1VHYA 3BBHA 4JAKA 4YQ5A 1V6ZA 4KDZA 1X7PA 3BBDA 4YQRA 3O7BA 2QMMA 3AI9X 1P9PA 4YPXA 4CNEA 1UALA 4YPYA 3KNUA 3OIJA 2I6DA 1UAMA 2V3KA 3IC6A 1UAKA 1ZJRA 1NS5A 3KY7A 2QWVA 4H3ZA 4YQLA 3IEFA 3KTYA 5GMCA 2YY8A 1UAJA 4YQ4A 4X3LA 4YQ3A 1Z85A 2Z0YA 4H3YA 3NK7A 4YVHA 1OY5A 5D9FA 2V3JA 4YQ6A 4PZKA 4YVJA 3QUVA 4YPZA 4MCCA 4YQCA 4YVGA 1O6DA 4XBOA 1IPAA 3L8UA 3ONPA 3GYQA 4RG1A 1K3RA
chains in the Genus database with same CATH superfamily
2HA8A 4YQPA 4YQ0A 3NK6A 4MCDA 2EGWA 1V2XA 4J3CA 1VHKA 4YQ1A 4L69A 4YVKA 3DCMX 1J85A 1MXIA 4YQAA 4YQQA 4E8BA 5FAIA 1VH0A 1TO0A 4YQOA 1NXZA 4YQJA 5GM8A 3ILKA 3OINA 4YQ9A 3AIAA 4MCBA 4YPWA 5GMBA 3N4JA 4YVIA 3E5YA 4YQBA 4JALA 4KGNA 4YQ7A 4YQIA 4YQKA 4YQNA 4JWFA 3KW2A 4YQ2A 4CNFA 3BBEA 4YQ8A 3AXZA 4CNGA 2EGVA 5CO4A 4YQSA 2CX8A 4YQTA 1X7OA 3N4KA 4YQDA 3OIIA 4X3MA 4CNDA 4YQGA 4IG6A 1GZ0A 2O3AA 4FAKA 1VHYA 3BBHA 4FMWA 4JAKA 4YQ5A 1V6ZA 4KDZA 1X7PA 3BBDA 4YQRA 3O7BA 2QMMA 3AI9X 1P9PA 4YPXA 4CNEA 1UALA 4YPYA 3KNUA 3OIJA 2I6DA 1UAMA 2V3KA 3IC6A 1UAKA 4JWJA 1ZJRA 1NS5A 3KY7A 2QWVA 4H3ZA 4YQLA 3IEFA 3KTYA 5GMCA 2YY8A 1UAJA 4YQ4A 4X3LA 4YQ3A 1Z85A 2Z0YA 4H3YA 3NK7A 4YVHA 1OY5A 4JWHA 5D9FA 2V3JA 4YQ6A 4JWGA 4PZKA 4YVJA 3QUVA 4YPZA 4MCCA 4YQCA 4YVGA 1O6DA 4XBOA 1IPAA 3L8UA 3ONPA 3GYQA 4RG1A 1K3RA
chains in the Genus database with same CATH topology
2HA8A 4YQPA 4YQ0A 3NK6A 4MCDA 2EGWA 1V2XA 4J3CA 1VHKA 4YQ1A 4L69A 4YVKA 3DCMX 1J85A 1MXIA 4YQAA 4YQQA 4E8BA 5FAIA 1VH0A 1TO0A 4YQOA 1NXZA 4YQJA 5GM8A 3ILKA 3OINA 4YQ9A 3AIAA 4MCBA 4YPWA 5GMBA 3N4JA 4YVIA 3E5YA 4YQBA 4JALA 4KGNA 4YQ7A 4YQIA 4YQKA 4YQNA 4JWFA 3KW2A 4YQ2A 4CNFA 3BBEA 4YQ8A 3AXZA 4CNGA 2EGVA 5CO4A 4YQSA 2CX8A 4YQTA 1X7OA 3N4KA 4YQDA 3OIIA 4X3MA 4CNDA 4YQGA 4IG6A 1GZ0A 2O3AA 4FAKA 1VHYA 3BBHA 4FMWA 4JAKA 4YQ5A 1V6ZA 4KDZA 1X7PA 3BBDA 4YQRA 3O7BA 2QMMA 3AI9X 1P9PA 4YPXA 4CNEA 1UALA 4YPYA 3KNUA 3OIJA 2I6DA 1UAMA 2V3KA 3IC6A 1UAKA 4JWJA 1ZJRA 1NS5A 3KY7A 2QWVA 4H3ZA 4YQLA 3IEFA 3KTYA 5GMCA 2YY8A 1UAJA 4YQ4A 4X3LA 4YQ3A 1Z85A 2Z0YA 4H3YA 3NK7A 4YVHA 1OY5A 4JWHA 5D9FA 2V3JA 4YQ6A 4JWGA 4PZKA 4YVJA 3QUVA 4YPZA 4MCCA 4YQCA 4YVGA 1O6DA 4XBOA 1IPAA 3L8UA 3ONPA 3GYQA 4RG1A 1K3RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HA8 A;  4YQP A;  4YQ0 A;  3NK6 A;  4MCD A;  2EGW A;  1V2X A;  4J3C A;  1VHK A;  4YQ1 A;  4L69 A;  4YVK A;  3DCM X;  1J85 A;  1MXI A;  4YQA A;  4YQQ A;  4E8B A;  5FAI A;  1VH0 A;  1TO0 A;  4YQO A;  1NXZ A;  4YQJ A;  5GM8 A;  3ILK A;  3OIN A;  4YQ9 A;  3AIA A;  4MCB A;  4YPW A;  5GMB A;  3N4J A;  4YVI A;  3E5Y A;  4YQB A;  4JAL A;  4KGN A;  4YQ7 A;  4YQI A;  4YQK A;  4YQN A;  3KW2 A;  4YQ2 A;  4CNF A;  3BBE A;  4YQ8 A;  3AXZ A;  4CNG A;  2EGV A;  5CO4 A;  4YQS A;  2CX8 A;  4YQT A;  1X7O A;  3N4K A;  4YQD A;  3OII A;  4X3M A;  4CND A;  4YQG A;  4IG6 A;  1GZ0 A;  2O3A A;  4FAK A;  1VHY A;  3BBH A;  4JAK A;  4YQ5 A;  1V6Z A;  4KDZ A;  1X7P A;  3BBD A;  4YQR A;  3O7B A;  2QMM A;  3AI9 X;  1P9P A;  4YPX A;  4CNE A;  1UAL A;  4YPY A;  3KNU A;  3OIJ A;  2I6D A;  1UAM A;  2V3K A;  3IC6 A;  1UAK A;  1ZJR A;  1NS5 A;  3KY7 A;  2QWV A;  4H3Z A;  4YQL A;  3IEF A;  3KTY A;  5GMC A;  2YY8 A;  1UAJ A;  4YQ4 A;  4X3L A;  4YQ3 A;  1Z85 A;  2Z0Y A;  4H3Y A;  3NK7 A;  4YVH A;  1OY5 A;  5D9F A;  2V3J A;  4YQ6 A;  4PZK A;  4YVJ A;  3QUV A;  4YPZ A;  4MCC A;  4YQC A;  4YVG A;  1O6D A;  4XBO A;  1IPA A;  3L8U A;  3ONP A;  3GYQ A;  4RG1 A;  1K3R A; 
#chains in the Genus database with same CATH topology
 2HA8 A;  4YQP A;  4YQ0 A;  3NK6 A;  4MCD A;  2EGW A;  1V2X A;  4J3C A;  1VHK A;  4YQ1 A;  4L69 A;  4YVK A;  3DCM X;  1J85 A;  1MXI A;  4YQA A;  4YQQ A;  4E8B A;  5FAI A;  1VH0 A;  1TO0 A;  4YQO A;  1NXZ A;  4YQJ A;  5GM8 A;  3ILK A;  3OIN A;  4YQ9 A;  3AIA A;  4MCB A;  4YPW A;  5GMB A;  3N4J A;  4YVI A;  3E5Y A;  4YQB A;  4JAL A;  4KGN A;  4YQ7 A;  4YQI A;  4YQK A;  4YQN A;  4JWF A;  3KW2 A;  4YQ2 A;  4CNF A;  3BBE A;  4YQ8 A;  3AXZ A;  4CNG A;  2EGV A;  5CO4 A;  4YQS A;  2CX8 A;  4YQT A;  1X7O A;  3N4K A;  4YQD A;  3OII A;  4X3M A;  4CND A;  4YQG A;  4IG6 A;  1GZ0 A;  2O3A A;  4FAK A;  1VHY A;  3BBH A;  4FMW A;  4JAK A;  4YQ5 A;  1V6Z A;  4KDZ A;  1X7P A;  3BBD A;  4YQR A;  3O7B A;  2QMM A;  3AI9 X;  1P9P A;  4YPX A;  4CNE A;  1UAL A;  4YPY A;  3KNU A;  3OIJ A;  2I6D A;  1UAM A;  2V3K A;  3IC6 A;  1UAK A;  4JWJ A;  1ZJR A;  1NS5 A;  3KY7 A;  2QWV A;  4H3Z A;  4YQL A;  3IEF A;  3KTY A;  5GMC A;  2YY8 A;  1UAJ A;  4YQ4 A;  4X3L A;  4YQ3 A;  1Z85 A;  2Z0Y A;  4H3Y A;  3NK7 A;  4YVH A;  1OY5 A;  4JWH A;  5D9F A;  2V3J A;  4YQ6 A;  4JWG A;  4PZK A;  4YVJ A;  3QUV A;  4YPZ A;  4MCC A;  4YQC A;  4YVG A;  1O6D A;  4XBO A;  1IPA A;  3L8U A;  3ONP A;  3GYQ A;  4RG1 A;  1K3R A; 
#chains in the Genus database with same CATH homology
 2HA8 A;  4YQP A;  4YQ0 A;  3NK6 A;  4MCD A;  2EGW A;  1V2X A;  4J3C A;  1VHK A;  4YQ1 A;  4L69 A;  4YVK A;  3DCM X;  1J85 A;  1MXI A;  4YQA A;  4YQQ A;  4E8B A;  5FAI A;  1VH0 A;  1TO0 A;  4YQO A;  1NXZ A;  4YQJ A;  5GM8 A;  3ILK A;  3OIN A;  4YQ9 A;  3AIA A;  4MCB A;  4YPW A;  5GMB A;  3N4J A;  4YVI A;  3E5Y A;  4YQB A;  4JAL A;  4KGN A;  4YQ7 A;  4YQI A;  4YQK A;  4YQN A;  4JWF A;  3KW2 A;  4YQ2 A;  4CNF A;  3BBE A;  4YQ8 A;  3AXZ A;  4CNG A;  2EGV A;  5CO4 A;  4YQS A;  2CX8 A;  4YQT A;  1X7O A;  3N4K A;  4YQD A;  3OII A;  4X3M A;  4CND A;  4YQG A;  4IG6 A;  1GZ0 A;  2O3A A;  4FAK A;  1VHY A;  3BBH A;  4FMW A;  4JAK A;  4YQ5 A;  1V6Z A;  4KDZ A;  1X7P A;  3BBD A;  4YQR A;  3O7B A;  2QMM A;  3AI9 X;  1P9P A;  4YPX A;  4CNE A;  1UAL A;  4YPY A;  3KNU A;  3OIJ A;  2I6D A;  1UAM A;  2V3K A;  3IC6 A;  1UAK A;  4JWJ A;  1ZJR A;  1NS5 A;  3KY7 A;  2QWV A;  4H3Z A;  4YQL A;  3IEF A;  3KTY A;  5GMC A;  2YY8 A;  1UAJ A;  4YQ4 A;  4X3L A;  4YQ3 A;  1Z85 A;  2Z0Y A;  4H3Y A;  3NK7 A;  4YVH A;  1OY5 A;  4JWH A;  5D9F A;  2V3J A;  4YQ6 A;  4JWG A;  4PZK A;  4YVJ A;  3QUV A;  4YPZ A;  4MCC A;  4YQC A;  4YVG A;  1O6D A;  4XBO A;  1IPA A;  3L8U A;  3ONP A;  3GYQ A;  4RG1 A;  1K3R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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