3N4JA

Putative rna methyltransferase from yersinia pestis
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
Knots found
sequence length
161
structure length
161
Chain Sequence
AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords RNA methyltransferase
publication title X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
rcsb
source organism Yersinia pestis
total genus 52
structure length 161
sequence length 161
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2010-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3n4jA00
3ILKA 4YPWA 4YQQA 4YQ5A 2CX8A 2O3AA 2V3JA 4YVHA 2Z0YA 3QUVA 2EGVA 4YQTA 4YQNA 4YVIA 2QMMA 4FAKA 3GYQA 3IEFA 1IPAA 2HA8A 1VHKA 3E5YA 3N4KA 1MXIA 2I6DA 4KDZA 4X3MA 4YQ3A 1Z85A 4H3ZA 1O6DA 1V6ZA 3KY7A 4MCBA 4J3CA 4YVKA 1ZJRA 4YQCA 3KNUA 4YQ8A 4YQ4A 4YQ0A 4PZKA 5GMBA 4YQJA 1OY5A 1X7PA 4JAKA 4YQDA 4X3LA 2EGWA 5FAIA 4YPYA 5GMCA 4E8BA 4YQPA 1K3RA 2QWVA 3KW2A 4YQ7A 3IC6A 3AIAA 1NXZA 3AXZA 5CO4A 4YQOA 1UAMA 5GM8A 1P9PA 1VH0A 1NS5A 4YVJA 4YQAA 4YQLA 2YY8A 1V2XA 4RG1A 4KGNA 3KTYA 3OIIA 4MCDA 4YQSA 1UAJA 4MCCA 1VHYA 3BBDA 4YQIA 4CNFA 1TO0A 4YQGA 4JALA 3AI9X 3BBEA 3NK7A 3O7BA 4YQRA 4YQ6A 4YVGA 1X7OA 2V3KA 4YQKA 1UALA 4CNDA 4L69A 3ONPA 4CNGA 4YPZA 4XBOA 3DCMX 1UAKA 4H3YA 3BBHA 5D9FA 4YQ9A 1GZ0A 1J85A 3N4JA 3L8UA 4YQ1A 3OINA 4YPXA 4CNEA 4IG6A 3OIJA 3NK6A 4YQ2A 4YQBA
chains in the Genus database with same CATH superfamily
3ILKA 4YPWA 4YQQA 4YQ5A 2CX8A 2O3AA 2V3JA 4JWGA 4YVHA 2Z0YA 3QUVA 2EGVA 4YQTA 4YQNA 4YVIA 2QMMA 4FAKA 3GYQA 3IEFA 1IPAA 2HA8A 1VHKA 3E5YA 3N4KA 1MXIA 2I6DA 4KDZA 4X3MA 4YQ3A 1Z85A 4H3ZA 1O6DA 1V6ZA 3KY7A 4MCBA 4J3CA 4YVKA 1ZJRA 4YQCA 3KNUA 4YQ8A 4YQ4A 4YQ0A 4PZKA 5GMBA 4YQJA 4JWFA 1OY5A 1X7PA 4JAKA 4YQDA 4X3LA 2EGWA 5FAIA 4YPYA 4JWJA 5GMCA 4E8BA 4YQPA 1K3RA 2QWVA 3KW2A 4YQ7A 3IC6A 3AIAA 1NXZA 3AXZA 5CO4A 4FMWA 4YQOA 1UAMA 5GM8A 1P9PA 1VH0A 1NS5A 4YVJA 4YQAA 4YQLA 2YY8A 1V2XA 4RG1A 4KGNA 3KTYA 4JWHA 3OIIA 4MCDA 4YQSA 1UAJA 4MCCA 1VHYA 3BBDA 4YQIA 4CNFA 1TO0A 4YQGA 4JALA 3AI9X 3BBEA 3NK7A 3O7BA 4YQRA 4YQ6A 4YVGA 1X7OA 2V3KA 4YQKA 1UALA 4CNDA 4L69A 3ONPA 4CNGA 4YPZA 4XBOA 3DCMX 1UAKA 4H3YA 3BBHA 5D9FA 4YQ9A 1GZ0A 1J85A 3N4JA 3L8UA 4YQ1A 3OINA 4YPXA 4CNEA 4IG6A 3OIJA 3NK6A 4YQ2A 4YQBA
chains in the Genus database with same CATH topology
3ILKA 4YPWA 4YQQA 4YQ5A 2CX8A 2O3AA 2V3JA 4JWGA 4YVHA 2Z0YA 3QUVA 2EGVA 4YQTA 4YQNA 4YVIA 2QMMA 4FAKA 3GYQA 3IEFA 1IPAA 2HA8A 1VHKA 3E5YA 3N4KA 1MXIA 2I6DA 4KDZA 4X3MA 4YQ3A 1Z85A 4H3ZA 1O6DA 1V6ZA 3KY7A 4MCBA 4J3CA 4YVKA 1ZJRA 4YQCA 3KNUA 4YQ8A 4YQ4A 4YQ0A 4PZKA 5GMBA 4YQJA 4JWFA 1OY5A 1X7PA 4JAKA 4YQDA 4X3LA 2EGWA 5FAIA 4YPYA 4JWJA 5GMCA 4E8BA 4YQPA 1K3RA 2QWVA 3KW2A 4YQ7A 3IC6A 3AIAA 1NXZA 3AXZA 5CO4A 4FMWA 4YQOA 1UAMA 5GM8A 1P9PA 1VH0A 1NS5A 4YVJA 4YQAA 4YQLA 2YY8A 1V2XA 4RG1A 4KGNA 3KTYA 4JWHA 3OIIA 4MCDA 4YQSA 1UAJA 4MCCA 1VHYA 3BBDA 4YQIA 4CNFA 1TO0A 4YQGA 4JALA 3AI9X 3BBEA 3NK7A 3O7BA 4YQRA 4YQ6A 4YVGA 1X7OA 2V3KA 4YQKA 1UALA 4CNDA 4L69A 3ONPA 4CNGA 4YPZA 4XBOA 3DCMX 1UAKA 4H3YA 3BBHA 5D9FA 4YQ9A 1GZ0A 1J85A 3N4JA 3L8UA 4YQ1A 3OINA 4YPXA 4CNEA 4IG6A 3OIJA 3NK6A 4YQ2A 4YQBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ILK A;  4YPW A;  4YQQ A;  4YQ5 A;  2CX8 A;  2O3A A;  2V3J A;  4YVH A;  2Z0Y A;  3QUV A;  2EGV A;  4YQT A;  4YQN A;  4YVI A;  2QMM A;  4FAK A;  3GYQ A;  3IEF A;  1IPA A;  2HA8 A;  1VHK A;  3E5Y A;  3N4K A;  1MXI A;  2I6D A;  4KDZ A;  4X3M A;  4YQ3 A;  1Z85 A;  4H3Z A;  1O6D A;  1V6Z A;  3KY7 A;  4MCB A;  4J3C A;  4YVK A;  1ZJR A;  4YQC A;  3KNU A;  4YQ8 A;  4YQ4 A;  4YQ0 A;  4PZK A;  5GMB A;  4YQJ A;  1OY5 A;  1X7P A;  4JAK A;  4YQD A;  4X3L A;  2EGW A;  5FAI A;  4YPY A;  5GMC A;  4E8B A;  4YQP A;  1K3R A;  2QWV A;  3KW2 A;  4YQ7 A;  3IC6 A;  3AIA A;  1NXZ A;  3AXZ A;  5CO4 A;  4YQO A;  1UAM A;  5GM8 A;  1P9P A;  1VH0 A;  1NS5 A;  4YVJ A;  4YQA A;  4YQL A;  2YY8 A;  1V2X A;  4RG1 A;  4KGN A;  3KTY A;  3OII A;  4MCD A;  4YQS A;  1UAJ A;  4MCC A;  1VHY A;  3BBD A;  4YQI A;  4CNF A;  1TO0 A;  4YQG A;  4JAL A;  3AI9 X;  3BBE A;  3NK7 A;  3O7B A;  4YQR A;  4YQ6 A;  4YVG A;  1X7O A;  2V3K A;  4YQK A;  1UAL A;  4CND A;  4L69 A;  3ONP A;  4CNG A;  4YPZ A;  4XBO A;  3DCM X;  1UAK A;  4H3Y A;  3BBH A;  5D9F A;  4YQ9 A;  1GZ0 A;  1J85 A;  3N4J A;  3L8U A;  4YQ1 A;  3OIN A;  4YPX A;  4CNE A;  4IG6 A;  3OIJ A;  3NK6 A;  4YQ2 A;  4YQB A; 
#chains in the Genus database with same CATH topology
 3ILK A;  4YPW A;  4YQQ A;  4YQ5 A;  2CX8 A;  2O3A A;  2V3J A;  4JWG A;  4YVH A;  2Z0Y A;  3QUV A;  2EGV A;  4YQT A;  4YQN A;  4YVI A;  2QMM A;  4FAK A;  3GYQ A;  3IEF A;  1IPA A;  2HA8 A;  1VHK A;  3E5Y A;  3N4K A;  1MXI A;  2I6D A;  4KDZ A;  4X3M A;  4YQ3 A;  1Z85 A;  4H3Z A;  1O6D A;  1V6Z A;  3KY7 A;  4MCB A;  4J3C A;  4YVK A;  1ZJR A;  4YQC A;  3KNU A;  4YQ8 A;  4YQ4 A;  4YQ0 A;  4PZK A;  5GMB A;  4YQJ A;  4JWF A;  1OY5 A;  1X7P A;  4JAK A;  4YQD A;  4X3L A;  2EGW A;  5FAI A;  4YPY A;  4JWJ A;  5GMC A;  4E8B A;  4YQP A;  1K3R A;  2QWV A;  3KW2 A;  4YQ7 A;  3IC6 A;  3AIA A;  1NXZ A;  3AXZ A;  5CO4 A;  4FMW A;  4YQO A;  1UAM A;  5GM8 A;  1P9P A;  1VH0 A;  1NS5 A;  4YVJ A;  4YQA A;  4YQL A;  2YY8 A;  1V2X A;  4RG1 A;  4KGN A;  3KTY A;  4JWH A;  3OII A;  4MCD A;  4YQS A;  1UAJ A;  4MCC A;  1VHY A;  3BBD A;  4YQI A;  4CNF A;  1TO0 A;  4YQG A;  4JAL A;  3AI9 X;  3BBE A;  3NK7 A;  3O7B A;  4YQR A;  4YQ6 A;  4YVG A;  1X7O A;  2V3K A;  4YQK A;  1UAL A;  4CND A;  4L69 A;  3ONP A;  4CNG A;  4YPZ A;  4XBO A;  3DCM X;  1UAK A;  4H3Y A;  3BBH A;  5D9F A;  4YQ9 A;  1GZ0 A;  1J85 A;  3N4J A;  3L8U A;  4YQ1 A;  3OIN A;  4YPX A;  4CNE A;  4IG6 A;  3OIJ A;  3NK6 A;  4YQ2 A;  4YQB A; 
#chains in the Genus database with same CATH homology
 3ILK A;  4YPW A;  4YQQ A;  4YQ5 A;  2CX8 A;  2O3A A;  2V3J A;  4JWG A;  4YVH A;  2Z0Y A;  3QUV A;  2EGV A;  4YQT A;  4YQN A;  4YVI A;  2QMM A;  4FAK A;  3GYQ A;  3IEF A;  1IPA A;  2HA8 A;  1VHK A;  3E5Y A;  3N4K A;  1MXI A;  2I6D A;  4KDZ A;  4X3M A;  4YQ3 A;  1Z85 A;  4H3Z A;  1O6D A;  1V6Z A;  3KY7 A;  4MCB A;  4J3C A;  4YVK A;  1ZJR A;  4YQC A;  3KNU A;  4YQ8 A;  4YQ4 A;  4YQ0 A;  4PZK A;  5GMB A;  4YQJ A;  4JWF A;  1OY5 A;  1X7P A;  4JAK A;  4YQD A;  4X3L A;  2EGW A;  5FAI A;  4YPY A;  4JWJ A;  5GMC A;  4E8B A;  4YQP A;  1K3R A;  2QWV A;  3KW2 A;  4YQ7 A;  3IC6 A;  3AIA A;  1NXZ A;  3AXZ A;  5CO4 A;  4FMW A;  4YQO A;  1UAM A;  5GM8 A;  1P9P A;  1VH0 A;  1NS5 A;  4YVJ A;  4YQA A;  4YQL A;  2YY8 A;  1V2X A;  4RG1 A;  4KGN A;  3KTY A;  4JWH A;  3OII A;  4MCD A;  4YQS A;  1UAJ A;  4MCC A;  1VHY A;  3BBD A;  4YQI A;  4CNF A;  1TO0 A;  4YQG A;  4JAL A;  3AI9 X;  3BBE A;  3NK7 A;  3O7B A;  4YQR A;  4YQ6 A;  4YVG A;  1X7O A;  2V3K A;  4YQK A;  1UAL A;  4CND A;  4L69 A;  3ONP A;  4CNG A;  4YPZ A;  4XBO A;  3DCM X;  1UAK A;  4H3Y A;  3BBH A;  5D9F A;  4YQ9 A;  1GZ0 A;  1J85 A;  3N4J A;  3L8U A;  4YQ1 A;  3OIN A;  4YPX A;  4CNE A;  4IG6 A;  3OIJ A;  3NK6 A;  4YQ2 A;  4YQB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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