3DCMX

Crystal structure of the thermotoga maritima spout family rna-methyltransferase protein tm1570 in complex with s-adenosyl-l-methionine
Total Genus 62
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
Knots found
sequence length
188
structure length
188
Chain Sequence
MLEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords Uncharacterized protein TM_1570
publication title Crystal structure of Thermotoga maritima SPOUT superfamily RNA methyltransferase Tm1570 in complex with S-adenosyl-L-methionine
pubmed doi rcsb
source organism Thermotoga maritima
total genus 62
structure length 188
sequence length 188
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2008-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF09936 Methyltrn_RNA_4 SAM-dependent RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3dcmX00
2I6DA 4YQ6A 3OIJA 1V2XA 3DCMX 1Z85A 3KY7A 4YQDA 3N4JA 4YQ0A 2EGWA 3AXZA 4YPYA 4J3CA 3AIAA 4YQ2A 3IC6A 3GYQA 4JALA 4YQCA 4YQLA 4H3ZA 3N4KA 4YPZA 4YVHA 4MCDA 4H3YA 1O6DA 5CO4A 4YQ1A 1J85A 4E8BA 4YQQA 3IEFA 5GM8A 4YQ4A 2HA8A 1V6ZA 3ILKA 2O3AA 3BBEA 4YQ9A 1MXIA 4YPXA 4YQPA 4YVJA 3L8UA 1P9PA 4YQ3A 4IG6A 3OIIA 1VHKA 4YQ8A 2QWVA 4CNDA 4YVKA 4YQ7A 4CNFA 4MCBA 2CX8A 4YQTA 3KNUA 4KGNA 1OY5A 4CNEA 2YY8A 4YQIA 4X3MA 4PZKA 1NS5A 4YQSA 4YQJA 1UAKA 3NK7A 2QMMA 2V3KA 1ZJRA 4YPWA 3NK6A 4YQ5A 3BBHA 4FAKA 3KTYA 5FAIA 4MCCA 4KDZA 5GMCA 3ONPA 4YQOA 3KW2A 1UAMA 2EGVA 4YQKA 5GMBA 3E5YA 3AI9X 1TO0A 4YQNA 1VHYA 4RG1A 4CNGA 4YVGA 4YQRA 4X3LA 1GZ0A 1UALA 1K3RA 4JAKA 4XBOA 3QUVA 4L69A 1X7OA 5D9FA 2Z0YA 4YQAA 4YVIA 1UAJA 1NXZA 4YQBA 1X7PA 3O7BA 1IPAA 2V3JA 4YQGA 1VH0A 3BBDA 3OINA
chains in the Genus database with same CATH superfamily
2I6DA 4YQ6A 3OIJA 1V2XA 3DCMX 1Z85A 3KY7A 4YQDA 3N4JA 4YQ0A 4JWJA 2EGWA 3AXZA 4YPYA 4J3CA 3AIAA 4YQ2A 3IC6A 3GYQA 4JALA 4FMWA 4YQCA 4YQLA 4JWHA 4H3ZA 3N4KA 4YPZA 4YVHA 4MCDA 4H3YA 1O6DA 5CO4A 4YQ1A 1J85A 4E8BA 4YQQA 3IEFA 5GM8A 4YQ4A 2HA8A 1V6ZA 3ILKA 2O3AA 3BBEA 4YQ9A 1MXIA 4YPXA 4YQPA 4YVJA 3L8UA 1P9PA 4YQ3A 4IG6A 3OIIA 1VHKA 4YQ8A 2QWVA 4CNDA 4YVKA 4YQ7A 4CNFA 4JWGA 4MCBA 2CX8A 4YQTA 3KNUA 4KGNA 1OY5A 4CNEA 2YY8A 4YQIA 1NS5A 4PZKA 4X3MA 4YQSA 4YQJA 1UAKA 3NK7A 2QMMA 2V3KA 1ZJRA 4YPWA 3NK6A 4YQ5A 3BBHA 4FAKA 3KTYA 5FAIA 4MCCA 4KDZA 5GMCA 3ONPA 4YQOA 3KW2A 1UAMA 2EGVA 4YQKA 5GMBA 3E5YA 3AI9X 1TO0A 4JWFA 4YQNA 1VHYA 4RG1A 4CNGA 4YVGA 4YQRA 4X3LA 1GZ0A 1UALA 1K3RA 4JAKA 4XBOA 3QUVA 4L69A 1X7OA 5D9FA 2Z0YA 4YQAA 4YVIA 1UAJA 1NXZA 4YQBA 1X7PA 3O7BA 1IPAA 2V3JA 4YQGA 1VH0A 3BBDA 3OINA
chains in the Genus database with same CATH topology
2I6DA 4YQ6A 3OIJA 1V2XA 3DCMX 1Z85A 3KY7A 4YQDA 3N4JA 4YQ0A 4JWJA 2EGWA 3AXZA 4YPYA 4J3CA 3AIAA 4YQ2A 3IC6A 3GYQA 4JALA 4FMWA 4YQCA 4YQLA 4JWHA 4H3ZA 3N4KA 4YPZA 4YVHA 4MCDA 4H3YA 1O6DA 5CO4A 4YQ1A 1J85A 4E8BA 4YQQA 3IEFA 5GM8A 4YQ4A 2HA8A 1V6ZA 3ILKA 2O3AA 3BBEA 4YQ9A 1MXIA 4YPXA 4YQPA 4YVJA 3L8UA 1P9PA 4YQ3A 4IG6A 3OIIA 1VHKA 4YQ8A 2QWVA 4CNDA 4YVKA 4YQ7A 4CNFA 4JWGA 4MCBA 2CX8A 4YQTA 3KNUA 4KGNA 1OY5A 4CNEA 2YY8A 4YQIA 1NS5A 4PZKA 4X3MA 4YQSA 4YQJA 1UAKA 3NK7A 2QMMA 2V3KA 1ZJRA 4YPWA 3NK6A 4YQ5A 3BBHA 4FAKA 3KTYA 5FAIA 4MCCA 4KDZA 5GMCA 3ONPA 4YQOA 3KW2A 1UAMA 2EGVA 4YQKA 5GMBA 3E5YA 3AI9X 1TO0A 4JWFA 4YQNA 1VHYA 4RG1A 4CNGA 4YVGA 4YQRA 4X3LA 1GZ0A 1UALA 1K3RA 4JAKA 4XBOA 3QUVA 4L69A 1X7OA 5D9FA 2Z0YA 4YQAA 4YVIA 1UAJA 1NXZA 4YQBA 1X7PA 3O7BA 1IPAA 2V3JA 4YQGA 1VH0A 3BBDA 3OINA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I6D A;  4YQ6 A;  3OIJ A;  1V2X A;  3DCM X;  1Z85 A;  3KY7 A;  4YQD A;  3N4J A;  4YQ0 A;  2EGW A;  3AXZ A;  4YPY A;  4J3C A;  3AIA A;  4YQ2 A;  3IC6 A;  3GYQ A;  4JAL A;  4YQC A;  4YQL A;  4H3Z A;  3N4K A;  4YPZ A;  4YVH A;  4MCD A;  4H3Y A;  1O6D A;  5CO4 A;  4YQ1 A;  1J85 A;  4E8B A;  4YQQ A;  3IEF A;  5GM8 A;  4YQ4 A;  2HA8 A;  1V6Z A;  3ILK A;  2O3A A;  3BBE A;  4YQ9 A;  1MXI A;  4YPX A;  4YQP A;  4YVJ A;  3L8U A;  1P9P A;  4YQ3 A;  4IG6 A;  3OII A;  1VHK A;  4YQ8 A;  2QWV A;  4CND A;  4YVK A;  4YQ7 A;  4CNF A;  4MCB A;  2CX8 A;  4YQT A;  3KNU A;  4KGN A;  1OY5 A;  4CNE A;  2YY8 A;  4YQI A;  4X3M A;  4PZK A;  1NS5 A;  4YQS A;  4YQJ A;  1UAK A;  3NK7 A;  2QMM A;  2V3K A;  1ZJR A;  4YPW A;  3NK6 A;  4YQ5 A;  3BBH A;  4FAK A;  3KTY A;  5FAI A;  4MCC A;  4KDZ A;  5GMC A;  3ONP A;  4YQO A;  3KW2 A;  1UAM A;  2EGV A;  4YQK A;  5GMB A;  3E5Y A;  3AI9 X;  1TO0 A;  4YQN A;  1VHY A;  4RG1 A;  4CNG A;  4YVG A;  4YQR A;  4X3L A;  1GZ0 A;  1UAL A;  1K3R A;  4JAK A;  4XBO A;  3QUV A;  4L69 A;  1X7O A;  5D9F A;  2Z0Y A;  4YQA A;  4YVI A;  1UAJ A;  1NXZ A;  4YQB A;  1X7P A;  3O7B A;  1IPA A;  2V3J A;  4YQG A;  1VH0 A;  3BBD A;  3OIN A; 
#chains in the Genus database with same CATH topology
 2I6D A;  4YQ6 A;  3OIJ A;  1V2X A;  3DCM X;  1Z85 A;  3KY7 A;  4YQD A;  3N4J A;  4YQ0 A;  4JWJ A;  2EGW A;  3AXZ A;  4YPY A;  4J3C A;  3AIA A;  4YQ2 A;  3IC6 A;  3GYQ A;  4JAL A;  4FMW A;  4YQC A;  4YQL A;  4JWH A;  4H3Z A;  3N4K A;  4YPZ A;  4YVH A;  4MCD A;  4H3Y A;  1O6D A;  5CO4 A;  4YQ1 A;  1J85 A;  4E8B A;  4YQQ A;  3IEF A;  5GM8 A;  4YQ4 A;  2HA8 A;  1V6Z A;  3ILK A;  2O3A A;  3BBE A;  4YQ9 A;  1MXI A;  4YPX A;  4YQP A;  4YVJ A;  3L8U A;  1P9P A;  4YQ3 A;  4IG6 A;  3OII A;  1VHK A;  4YQ8 A;  2QWV A;  4CND A;  4YVK A;  4YQ7 A;  4CNF A;  4JWG A;  4MCB A;  2CX8 A;  4YQT A;  3KNU A;  4KGN A;  1OY5 A;  4CNE A;  2YY8 A;  4YQI A;  1NS5 A;  4PZK A;  4X3M A;  4YQS A;  4YQJ A;  1UAK A;  3NK7 A;  2QMM A;  2V3K A;  1ZJR A;  4YPW A;  3NK6 A;  4YQ5 A;  3BBH A;  4FAK A;  3KTY A;  5FAI A;  4MCC A;  4KDZ A;  5GMC A;  3ONP A;  4YQO A;  3KW2 A;  1UAM A;  2EGV A;  4YQK A;  5GMB A;  3E5Y A;  3AI9 X;  1TO0 A;  4JWF A;  4YQN A;  1VHY A;  4RG1 A;  4CNG A;  4YVG A;  4YQR A;  4X3L A;  1GZ0 A;  1UAL A;  1K3R A;  4JAK A;  4XBO A;  3QUV A;  4L69 A;  1X7O A;  5D9F A;  2Z0Y A;  4YQA A;  4YVI A;  1UAJ A;  1NXZ A;  4YQB A;  1X7P A;  3O7B A;  1IPA A;  2V3J A;  4YQG A;  1VH0 A;  3BBD A;  3OIN A; 
#chains in the Genus database with same CATH homology
 2I6D A;  4YQ6 A;  3OIJ A;  1V2X A;  3DCM X;  1Z85 A;  3KY7 A;  4YQD A;  3N4J A;  4YQ0 A;  4JWJ A;  2EGW A;  3AXZ A;  4YPY A;  4J3C A;  3AIA A;  4YQ2 A;  3IC6 A;  3GYQ A;  4JAL A;  4FMW A;  4YQC A;  4YQL A;  4JWH A;  4H3Z A;  3N4K A;  4YPZ A;  4YVH A;  4MCD A;  4H3Y A;  1O6D A;  5CO4 A;  4YQ1 A;  1J85 A;  4E8B A;  4YQQ A;  3IEF A;  5GM8 A;  4YQ4 A;  2HA8 A;  1V6Z A;  3ILK A;  2O3A A;  3BBE A;  4YQ9 A;  1MXI A;  4YPX A;  4YQP A;  4YVJ A;  3L8U A;  1P9P A;  4YQ3 A;  4IG6 A;  3OII A;  1VHK A;  4YQ8 A;  2QWV A;  4CND A;  4YVK A;  4YQ7 A;  4CNF A;  4JWG A;  4MCB A;  2CX8 A;  4YQT A;  3KNU A;  4KGN A;  1OY5 A;  4CNE A;  2YY8 A;  4YQI A;  1NS5 A;  4PZK A;  4X3M A;  4YQS A;  4YQJ A;  1UAK A;  3NK7 A;  2QMM A;  2V3K A;  1ZJR A;  4YPW A;  3NK6 A;  4YQ5 A;  3BBH A;  4FAK A;  3KTY A;  5FAI A;  4MCC A;  4KDZ A;  5GMC A;  3ONP A;  4YQO A;  3KW2 A;  1UAM A;  2EGV A;  4YQK A;  5GMB A;  3E5Y A;  3AI9 X;  1TO0 A;  4JWF A;  4YQN A;  1VHY A;  4RG1 A;  4CNG A;  4YVG A;  4YQR A;  4X3L A;  1GZ0 A;  1UAL A;  1K3R A;  4JAK A;  4XBO A;  3QUV A;  4L69 A;  1X7O A;  5D9F A;  2Z0Y A;  4YQA A;  4YVI A;  1UAJ A;  1NXZ A;  4YQB A;  1X7P A;  3O7B A;  1IPA A;  2V3J A;  4YQG A;  1VH0 A;  3BBD A;  3OIN A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...