3E5YA

Crystal structure of trmh family rna methyltransferase from burkholderia pseudomallei
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
Knots found
sequence length
156
structure length
156
Chain Sequence
MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFEGGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords TrmH family RNA methyltransferase
publication title Crystal structure of TrmH family RNA methyltransferase from Burkholderia pseudomallei
rcsb
source organism Burkholderia pseudomallei 305
total genus 51
structure length 156
sequence length 156
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2008-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3e5yA00
2Z0YA 4CNFA 3QUVA 3OIIA 3BBHA 4FAKA 4YPYA 2QMMA 4YQSA 3KW2A 5GMCA 4YVKA 1GZ0A 1O6DA 1ZJRA 2CX8A 4CNGA 4H3YA 3KTYA 2HA8A 4YVIA 2EGVA 2V3KA 1IPAA 4YQ7A 3OIJA 4KGNA 5FAIA 4YQIA 1P9PA 3ONPA 3OINA 3L8UA 3GYQA 1X7OA 1NXZA 4YQTA 4E8BA 4RG1A 4YQAA 4YPXA 4YVJA 4YQGA 4MCCA 4MCDA 4YQOA 4YQBA 4X3MA 4YVHA 4PZKA 3O7BA 4X3LA 3IC6A 1VHKA 4H3ZA 4YQLA 3N4KA 4CNEA 2EGWA 4YPWA 4YQ5A 4YQ0A 4YQNA 4CNDA 4YQ3A 5CO4A 3NK6A 1J85A 4IG6A 3AIAA 1OY5A 2YY8A 4YQPA 1MXIA 1NS5A 4MCBA 3AI9X 4YQ6A 3NK7A 3DCMX 4YQ2A 4YPZA 5GM8A 1UAJA 4YQ1A 4YQCA 2I6DA 1X7PA 1V6ZA 4KDZA 1VH0A 4YQQA 4YQ4A 3BBEA 2V3JA 3BBDA 3N4JA 1TO0A 4YQDA 3E5YA 3KY7A 1V2XA 5GMBA 3KNUA 4J3CA 4YQ8A 4YVGA 1UAKA 3AXZA 1Z85A 4JALA 4YQJA 3ILKA 4YQRA 4L69A 4YQKA 4XBOA 1UAMA 3IEFA 1UALA 1VHYA 2O3AA 1K3RA 5D9FA 2QWVA 4JAKA 4YQ9A
chains in the Genus database with same CATH superfamily
2Z0YA 4CNFA 3QUVA 3OIIA 3BBHA 4FAKA 4YPYA 2QMMA 4YQSA 3KW2A 5GMCA 4YVKA 1GZ0A 1O6DA 1ZJRA 2CX8A 4CNGA 4H3YA 3KTYA 2HA8A 4YVIA 2EGVA 4JWJA 2V3KA 1IPAA 4YQ7A 4KGNA 3OIJA 4JWFA 5FAIA 4YQIA 1P9PA 3ONPA 3OINA 3L8UA 3GYQA 1X7OA 1NXZA 4YQTA 4E8BA 4RG1A 4YQAA 4YPXA 4YVJA 4YQGA 4MCCA 4MCDA 4YQOA 4YQBA 4X3MA 4YVHA 4PZKA 3O7BA 4X3LA 3IC6A 1VHKA 4H3ZA 4YQLA 3N4KA 4CNEA 2EGWA 4YPWA 4YQ5A 4YQ0A 4YQNA 4CNDA 4JWHA 4YQ3A 5CO4A 3NK6A 1J85A 4IG6A 3AIAA 1OY5A 2YY8A 4YQPA 1MXIA 1NS5A 4MCBA 3AI9X 4YQ6A 3NK7A 3DCMX 4YQ2A 4YPZA 5GM8A 4FMWA 1UAJA 4YQ1A 4YQCA 2I6DA 1X7PA 1V6ZA 4KDZA 1VH0A 4YQQA 4YQ4A 3BBEA 2V3JA 3BBDA 3N4JA 1TO0A 4YQDA 3E5YA 3KY7A 1V2XA 5GMBA 3KNUA 4J3CA 4YQ8A 4YVGA 1UAKA 4JWGA 3AXZA 1Z85A 4JALA 4YQJA 3ILKA 4YQRA 4L69A 4YQKA 4XBOA 1UAMA 3IEFA 1UALA 1VHYA 2O3AA 1K3RA 5D9FA 2QWVA 4JAKA 4YQ9A
chains in the Genus database with same CATH topology
2Z0YA 4CNFA 3QUVA 3OIIA 3BBHA 4FAKA 4YPYA 2QMMA 4YQSA 3KW2A 5GMCA 4YVKA 1GZ0A 1O6DA 1ZJRA 2CX8A 4CNGA 4H3YA 3KTYA 2HA8A 4YVIA 2EGVA 4JWJA 2V3KA 1IPAA 4YQ7A 4KGNA 3OIJA 4JWFA 5FAIA 4YQIA 1P9PA 3ONPA 3OINA 3L8UA 3GYQA 1X7OA 1NXZA 4YQTA 4E8BA 4RG1A 4YQAA 4YPXA 4YVJA 4YQGA 4MCCA 4MCDA 4YQOA 4YQBA 4X3MA 4YVHA 4PZKA 3O7BA 4X3LA 3IC6A 1VHKA 4H3ZA 4YQLA 3N4KA 4CNEA 2EGWA 4YPWA 4YQ5A 4YQ0A 4YQNA 4CNDA 4JWHA 4YQ3A 5CO4A 3NK6A 1J85A 4IG6A 3AIAA 1OY5A 2YY8A 4YQPA 1MXIA 1NS5A 4MCBA 3AI9X 4YQ6A 3NK7A 3DCMX 4YQ2A 4YPZA 5GM8A 4FMWA 1UAJA 4YQ1A 4YQCA 2I6DA 1X7PA 1V6ZA 4KDZA 1VH0A 4YQQA 4YQ4A 3BBEA 2V3JA 3BBDA 3N4JA 1TO0A 4YQDA 3E5YA 3KY7A 1V2XA 5GMBA 3KNUA 4J3CA 4YQ8A 4YVGA 1UAKA 4JWGA 3AXZA 1Z85A 4JALA 4YQJA 3ILKA 4YQRA 4L69A 4YQKA 4XBOA 1UAMA 3IEFA 1UALA 1VHYA 2O3AA 1K3RA 5D9FA 2QWVA 4JAKA 4YQ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z0Y A;  4CNF A;  3QUV A;  3OII A;  3BBH A;  4FAK A;  4YPY A;  2QMM A;  4YQS A;  3KW2 A;  5GMC A;  4YVK A;  1GZ0 A;  1O6D A;  1ZJR A;  2CX8 A;  4CNG A;  4H3Y A;  3KTY A;  2HA8 A;  4YVI A;  2EGV A;  2V3K A;  1IPA A;  4YQ7 A;  3OIJ A;  4KGN A;  5FAI A;  4YQI A;  1P9P A;  3ONP A;  3OIN A;  3L8U A;  3GYQ A;  1X7O A;  1NXZ A;  4YQT A;  4E8B A;  4RG1 A;  4YQA A;  4YPX A;  4YVJ A;  4YQG A;  4MCC A;  4MCD A;  4YQO A;  4YQB A;  4X3M A;  4YVH A;  4PZK A;  3O7B A;  4X3L A;  3IC6 A;  1VHK A;  4H3Z A;  4YQL A;  3N4K A;  4CNE A;  2EGW A;  4YPW A;  4YQ5 A;  4YQ0 A;  4YQN A;  4CND A;  4YQ3 A;  5CO4 A;  3NK6 A;  1J85 A;  4IG6 A;  3AIA A;  1OY5 A;  2YY8 A;  4YQP A;  1MXI A;  1NS5 A;  4MCB A;  3AI9 X;  4YQ6 A;  3NK7 A;  3DCM X;  4YQ2 A;  4YPZ A;  5GM8 A;  1UAJ A;  4YQ1 A;  4YQC A;  2I6D A;  1X7P A;  1V6Z A;  4KDZ A;  1VH0 A;  4YQQ A;  4YQ4 A;  3BBE A;  2V3J A;  3BBD A;  3N4J A;  1TO0 A;  4YQD A;  3E5Y A;  3KY7 A;  1V2X A;  5GMB A;  3KNU A;  4J3C A;  4YQ8 A;  4YVG A;  1UAK A;  3AXZ A;  1Z85 A;  4JAL A;  4YQJ A;  3ILK A;  4YQR A;  4L69 A;  4YQK A;  4XBO A;  1UAM A;  3IEF A;  1UAL A;  1VHY A;  2O3A A;  1K3R A;  5D9F A;  2QWV A;  4JAK A;  4YQ9 A; 
#chains in the Genus database with same CATH topology
 2Z0Y A;  4CNF A;  3QUV A;  3OII A;  3BBH A;  4FAK A;  4YPY A;  2QMM A;  4YQS A;  3KW2 A;  5GMC A;  4YVK A;  1GZ0 A;  1O6D A;  1ZJR A;  2CX8 A;  4CNG A;  4H3Y A;  3KTY A;  2HA8 A;  4YVI A;  2EGV A;  4JWJ A;  2V3K A;  1IPA A;  4YQ7 A;  4KGN A;  3OIJ A;  4JWF A;  5FAI A;  4YQI A;  1P9P A;  3ONP A;  3OIN A;  3L8U A;  3GYQ A;  1X7O A;  1NXZ A;  4YQT A;  4E8B A;  4RG1 A;  4YQA A;  4YPX A;  4YVJ A;  4YQG A;  4MCC A;  4MCD A;  4YQO A;  4YQB A;  4X3M A;  4YVH A;  4PZK A;  3O7B A;  4X3L A;  3IC6 A;  1VHK A;  4H3Z A;  4YQL A;  3N4K A;  4CNE A;  2EGW A;  4YPW A;  4YQ5 A;  4YQ0 A;  4YQN A;  4CND A;  4JWH A;  4YQ3 A;  5CO4 A;  3NK6 A;  1J85 A;  4IG6 A;  3AIA A;  1OY5 A;  2YY8 A;  4YQP A;  1MXI A;  1NS5 A;  4MCB A;  3AI9 X;  4YQ6 A;  3NK7 A;  3DCM X;  4YQ2 A;  4YPZ A;  5GM8 A;  4FMW A;  1UAJ A;  4YQ1 A;  4YQC A;  2I6D A;  1X7P A;  1V6Z A;  4KDZ A;  1VH0 A;  4YQQ A;  4YQ4 A;  3BBE A;  2V3J A;  3BBD A;  3N4J A;  1TO0 A;  4YQD A;  3E5Y A;  3KY7 A;  1V2X A;  5GMB A;  3KNU A;  4J3C A;  4YQ8 A;  4YVG A;  1UAK A;  4JWG A;  3AXZ A;  1Z85 A;  4JAL A;  4YQJ A;  3ILK A;  4YQR A;  4L69 A;  4YQK A;  4XBO A;  1UAM A;  3IEF A;  1UAL A;  1VHY A;  2O3A A;  1K3R A;  5D9F A;  2QWV A;  4JAK A;  4YQ9 A; 
#chains in the Genus database with same CATH homology
 2Z0Y A;  4CNF A;  3QUV A;  3OII A;  3BBH A;  4FAK A;  4YPY A;  2QMM A;  4YQS A;  3KW2 A;  5GMC A;  4YVK A;  1GZ0 A;  1O6D A;  1ZJR A;  2CX8 A;  4CNG A;  4H3Y A;  3KTY A;  2HA8 A;  4YVI A;  2EGV A;  4JWJ A;  2V3K A;  1IPA A;  4YQ7 A;  4KGN A;  3OIJ A;  4JWF A;  5FAI A;  4YQI A;  1P9P A;  3ONP A;  3OIN A;  3L8U A;  3GYQ A;  1X7O A;  1NXZ A;  4YQT A;  4E8B A;  4RG1 A;  4YQA A;  4YPX A;  4YVJ A;  4YQG A;  4MCC A;  4MCD A;  4YQO A;  4YQB A;  4X3M A;  4YVH A;  4PZK A;  3O7B A;  4X3L A;  3IC6 A;  1VHK A;  4H3Z A;  4YQL A;  3N4K A;  4CNE A;  2EGW A;  4YPW A;  4YQ5 A;  4YQ0 A;  4YQN A;  4CND A;  4JWH A;  4YQ3 A;  5CO4 A;  3NK6 A;  1J85 A;  4IG6 A;  3AIA A;  1OY5 A;  2YY8 A;  4YQP A;  1MXI A;  1NS5 A;  4MCB A;  3AI9 X;  4YQ6 A;  3NK7 A;  3DCM X;  4YQ2 A;  4YPZ A;  5GM8 A;  4FMW A;  1UAJ A;  4YQ1 A;  4YQC A;  2I6D A;  1X7P A;  1V6Z A;  4KDZ A;  1VH0 A;  4YQQ A;  4YQ4 A;  3BBE A;  2V3J A;  3BBD A;  3N4J A;  1TO0 A;  4YQD A;  3E5Y A;  3KY7 A;  1V2X A;  5GMB A;  3KNU A;  4J3C A;  4YQ8 A;  4YVG A;  1UAK A;  4JWG A;  3AXZ A;  1Z85 A;  4JAL A;  4YQJ A;  3ILK A;  4YQR A;  4L69 A;  4YQK A;  4XBO A;  1UAM A;  3IEF A;  1UAL A;  1VHY A;  2O3A A;  1K3R A;  5D9F A;  2QWV A;  4JAK A;  4YQ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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