3KTYA

Crystal structure of probable methyltransferase from bordetella pertussis tohama i
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
Knots found
sequence length
173
structure length
167
Chain Sequence
SNAMTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVTLAFALTTRPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Probable methyltransferase
publication title Crystal Structure of Probable Methyltransferase SpoU from Bordetella pertussis Tohama I
rcsb
source organism Bordetella pertussis
total genus 48
structure length 167
sequence length 173
chains with identical sequence B, C
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2009-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3ktyA01
4IG6A 1K3RA 4X3MA 4YQCA 2HA8A 1UAJA 3KY7A 3OIJA 4YQIA 5FAIA 4YVGA 4YQ8A 2YY8A 4YQPA 3BBEA 2V3KA 4CNFA 4YQGA 4YQ7A 4YQOA 4YQ3A 3KTYA 4YQDA 3DCMX 4YQQA 4YVHA 4YQ2A 4H3YA 1IPAA 3KW2A 4YQSA 4YQ1A 1GZ0A 3KNUA 4JALA 3GYQA 4YPYA 1UAKA 3IEFA 5CO4A 2CX8A 2Z0YA 3NK6A 3L8UA 4YVJA 1VHYA 1TO0A 1VH0A 4CNEA 1OY5A 1Z85A 4KGNA 4YQTA 5GM8A 4H3ZA 2O3AA 3AI9X 4KDZA 2V3JA 4L69A 4YQ6A 4YPWA 4YQNA 3IC6A 4MCBA 1NXZA 3ONPA 4RG1A 3AIAA 1O6DA 4E8BA 4PZKA 4MCCA 4YQ4A 1X7OA 3N4KA 4FAKA 1UAMA 4YPXA 3NK7A 4YVKA 1ZJRA 5D9FA 3OINA 1V2XA 4YQJA 3BBDA 1V6ZA 2I6DA 4CNDA 4YQRA 3N4JA 1UALA 2EGWA 4CNGA 4XBOA 4MCDA 3BBHA 3QUVA 2QMMA 4J3CA 5GMCA 1J85A 2EGVA 3OIIA 4YVIA 2QWVA 4X3LA 1MXIA 3AXZA 3ILKA 3O7BA 4YQLA 1NS5A 5GMBA 1X7PA 4YPZA 4YQ5A 1VHKA 4YQBA 4YQ0A 1P9PA 3E5YA 4JAKA 4YQAA 4YQ9A 4YQKA
chains in the Genus database with same CATH superfamily
4IG6A 1K3RA 4X3MA 4YQCA 2HA8A 1UAJA 3KY7A 3OIJA 4YQIA 5FAIA 4YVGA 4YQ8A 2YY8A 4JWFA 3BBEA 4YQPA 2V3KA 4JWGA 4CNFA 4YQGA 4YQ7A 4YQOA 4YQ3A 3KTYA 4YQDA 3DCMX 4YQQA 4YVHA 4YQ2A 4H3YA 1IPAA 3KW2A 4YQSA 4YQ1A 1GZ0A 3KNUA 4JALA 3GYQA 4YPYA 1UAKA 3IEFA 5CO4A 2CX8A 2Z0YA 3NK6A 3L8UA 4YVJA 1VHYA 1TO0A 1VH0A 4CNEA 1OY5A 1Z85A 4KGNA 4FMWA 4YQTA 5GM8A 4H3ZA 2O3AA 3AI9X 4KDZA 2V3JA 4L69A 4YQ6A 4YPWA 4YQNA 3IC6A 4MCBA 1NXZA 3ONPA 4RG1A 3AIAA 1O6DA 4E8BA 4PZKA 4MCCA 4JWHA 4YQ4A 1X7OA 3N4KA 4FAKA 1UAMA 4YPXA 3NK7A 4YVKA 1ZJRA 5D9FA 3OINA 1V2XA 4YQJA 3BBDA 1V6ZA 2I6DA 4CNDA 4YQRA 3N4JA 1UALA 2EGWA 4CNGA 4XBOA 4MCDA 3BBHA 3QUVA 2QMMA 4J3CA 5GMCA 1J85A 2EGVA 3OIIA 4JWJA 4YVIA 2QWVA 4X3LA 1MXIA 3AXZA 3ILKA 3O7BA 4YQLA 1NS5A 5GMBA 1X7PA 4YPZA 4YQ5A 1VHKA 4YQBA 4YQ0A 1P9PA 3E5YA 4JAKA 4YQAA 4YQ9A 4YQKA
chains in the Genus database with same CATH topology
4IG6A 1K3RA 4X3MA 4YQCA 2HA8A 1UAJA 3KY7A 3OIJA 4YQIA 5FAIA 4YVGA 4YQ8A 2YY8A 4JWFA 3BBEA 4YQPA 2V3KA 4JWGA 4CNFA 4YQGA 4YQ7A 4YQOA 4YQ3A 3KTYA 4YQDA 3DCMX 4YQQA 4YVHA 4YQ2A 4H3YA 1IPAA 3KW2A 4YQSA 4YQ1A 1GZ0A 3KNUA 4JALA 3GYQA 4YPYA 1UAKA 3IEFA 5CO4A 2CX8A 2Z0YA 3NK6A 3L8UA 4YVJA 1VHYA 1TO0A 1VH0A 4CNEA 1OY5A 1Z85A 4KGNA 4FMWA 4YQTA 5GM8A 4H3ZA 2O3AA 3AI9X 4KDZA 2V3JA 4L69A 4YQ6A 4YPWA 4YQNA 3IC6A 4MCBA 1NXZA 3ONPA 4RG1A 3AIAA 1O6DA 4E8BA 4PZKA 4MCCA 4JWHA 4YQ4A 1X7OA 3N4KA 4FAKA 1UAMA 4YPXA 3NK7A 4YVKA 1ZJRA 5D9FA 3OINA 1V2XA 4YQJA 3BBDA 1V6ZA 2I6DA 4CNDA 4YQRA 3N4JA 1UALA 2EGWA 4CNGA 4XBOA 4MCDA 3BBHA 3QUVA 2QMMA 4J3CA 5GMCA 1J85A 2EGVA 3OIIA 4JWJA 4YVIA 2QWVA 4X3LA 1MXIA 3AXZA 3ILKA 3O7BA 4YQLA 1NS5A 5GMBA 1X7PA 4YPZA 4YQ5A 1VHKA 4YQBA 4YQ0A 1P9PA 3E5YA 4JAKA 4YQAA 4YQ9A 4YQKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IG6 A;  1K3R A;  4X3M A;  4YQC A;  2HA8 A;  1UAJ A;  3KY7 A;  3OIJ A;  4YQI A;  5FAI A;  4YVG A;  4YQ8 A;  2YY8 A;  4YQP A;  3BBE A;  2V3K A;  4CNF A;  4YQG A;  4YQ7 A;  4YQO A;  4YQ3 A;  3KTY A;  4YQD A;  3DCM X;  4YQQ A;  4YVH A;  4YQ2 A;  4H3Y A;  1IPA A;  3KW2 A;  4YQS A;  4YQ1 A;  1GZ0 A;  3KNU A;  4JAL A;  3GYQ A;  4YPY A;  1UAK A;  3IEF A;  5CO4 A;  2CX8 A;  2Z0Y A;  3NK6 A;  3L8U A;  4YVJ A;  1VHY A;  1TO0 A;  1VH0 A;  4CNE A;  1OY5 A;  1Z85 A;  4KGN A;  4YQT A;  5GM8 A;  4H3Z A;  2O3A A;  3AI9 X;  4KDZ A;  2V3J A;  4L69 A;  4YQ6 A;  4YPW A;  4YQN A;  3IC6 A;  4MCB A;  1NXZ A;  3ONP A;  4RG1 A;  3AIA A;  1O6D A;  4E8B A;  4PZK A;  4MCC A;  4YQ4 A;  1X7O A;  3N4K A;  4FAK A;  1UAM A;  4YPX A;  3NK7 A;  4YVK A;  1ZJR A;  5D9F A;  3OIN A;  1V2X A;  4YQJ A;  3BBD A;  1V6Z A;  2I6D A;  4CND A;  4YQR A;  3N4J A;  1UAL A;  2EGW A;  4CNG A;  4XBO A;  4MCD A;  3BBH A;  3QUV A;  2QMM A;  4J3C A;  5GMC A;  1J85 A;  2EGV A;  3OII A;  4YVI A;  2QWV A;  4X3L A;  1MXI A;  3AXZ A;  3ILK A;  3O7B A;  4YQL A;  1NS5 A;  5GMB A;  1X7P A;  4YPZ A;  4YQ5 A;  1VHK A;  4YQB A;  4YQ0 A;  1P9P A;  3E5Y A;  4JAK A;  4YQA A;  4YQ9 A;  4YQK A; 
#chains in the Genus database with same CATH topology
 4IG6 A;  1K3R A;  4X3M A;  4YQC A;  2HA8 A;  1UAJ A;  3KY7 A;  3OIJ A;  4YQI A;  5FAI A;  4YVG A;  4YQ8 A;  2YY8 A;  4JWF A;  3BBE A;  4YQP A;  2V3K A;  4JWG A;  4CNF A;  4YQG A;  4YQ7 A;  4YQO A;  4YQ3 A;  3KTY A;  4YQD A;  3DCM X;  4YQQ A;  4YVH A;  4YQ2 A;  4H3Y A;  1IPA A;  3KW2 A;  4YQS A;  4YQ1 A;  1GZ0 A;  3KNU A;  4JAL A;  3GYQ A;  4YPY A;  1UAK A;  3IEF A;  5CO4 A;  2CX8 A;  2Z0Y A;  3NK6 A;  3L8U A;  4YVJ A;  1VHY A;  1TO0 A;  1VH0 A;  4CNE A;  1OY5 A;  1Z85 A;  4KGN A;  4FMW A;  4YQT A;  5GM8 A;  4H3Z A;  2O3A A;  3AI9 X;  4KDZ A;  2V3J A;  4L69 A;  4YQ6 A;  4YPW A;  4YQN A;  3IC6 A;  4MCB A;  1NXZ A;  3ONP A;  4RG1 A;  3AIA A;  1O6D A;  4E8B A;  4PZK A;  4MCC A;  4JWH A;  4YQ4 A;  1X7O A;  3N4K A;  4FAK A;  1UAM A;  4YPX A;  3NK7 A;  4YVK A;  1ZJR A;  5D9F A;  3OIN A;  1V2X A;  4YQJ A;  3BBD A;  1V6Z A;  2I6D A;  4CND A;  4YQR A;  3N4J A;  1UAL A;  2EGW A;  4CNG A;  4XBO A;  4MCD A;  3BBH A;  3QUV A;  2QMM A;  4J3C A;  5GMC A;  1J85 A;  2EGV A;  3OII A;  4JWJ A;  4YVI A;  2QWV A;  4X3L A;  1MXI A;  3AXZ A;  3ILK A;  3O7B A;  4YQL A;  1NS5 A;  5GMB A;  1X7P A;  4YPZ A;  4YQ5 A;  1VHK A;  4YQB A;  4YQ0 A;  1P9P A;  3E5Y A;  4JAK A;  4YQA A;  4YQ9 A;  4YQK A; 
#chains in the Genus database with same CATH homology
 4IG6 A;  1K3R A;  4X3M A;  4YQC A;  2HA8 A;  1UAJ A;  3KY7 A;  3OIJ A;  4YQI A;  5FAI A;  4YVG A;  4YQ8 A;  2YY8 A;  4JWF A;  3BBE A;  4YQP A;  2V3K A;  4JWG A;  4CNF A;  4YQG A;  4YQ7 A;  4YQO A;  4YQ3 A;  3KTY A;  4YQD A;  3DCM X;  4YQQ A;  4YVH A;  4YQ2 A;  4H3Y A;  1IPA A;  3KW2 A;  4YQS A;  4YQ1 A;  1GZ0 A;  3KNU A;  4JAL A;  3GYQ A;  4YPY A;  1UAK A;  3IEF A;  5CO4 A;  2CX8 A;  2Z0Y A;  3NK6 A;  3L8U A;  4YVJ A;  1VHY A;  1TO0 A;  1VH0 A;  4CNE A;  1OY5 A;  1Z85 A;  4KGN A;  4FMW A;  4YQT A;  5GM8 A;  4H3Z A;  2O3A A;  3AI9 X;  4KDZ A;  2V3J A;  4L69 A;  4YQ6 A;  4YPW A;  4YQN A;  3IC6 A;  4MCB A;  1NXZ A;  3ONP A;  4RG1 A;  3AIA A;  1O6D A;  4E8B A;  4PZK A;  4MCC A;  4JWH A;  4YQ4 A;  1X7O A;  3N4K A;  4FAK A;  1UAM A;  4YPX A;  3NK7 A;  4YVK A;  1ZJR A;  5D9F A;  3OIN A;  1V2X A;  4YQJ A;  3BBD A;  1V6Z A;  2I6D A;  4CND A;  4YQR A;  3N4J A;  1UAL A;  2EGW A;  4CNG A;  4XBO A;  4MCD A;  3BBH A;  3QUV A;  2QMM A;  4J3C A;  5GMC A;  1J85 A;  2EGV A;  3OII A;  4JWJ A;  4YVI A;  2QWV A;  4X3L A;  1MXI A;  3AXZ A;  3ILK A;  3O7B A;  4YQL A;  1NS5 A;  5GMB A;  1X7P A;  4YPZ A;  4YQ5 A;  1VHK A;  4YQB A;  4YQ0 A;  1P9P A;  3E5Y A;  4JAK A;  4YQA A;  4YQ9 A;  4YQK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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