4PZKA

Crystal strucrure of putative rna methyltransferase from bacillus anthracis.
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
Knots found
sequence length
159
structure length
159
Chain Sequence
GVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYPGLDLEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Bacillus anthracis
publication title Crystal strucrure of putative RNA methyltransferase from Bacillus anthracis.
rcsb
molecule keywords tRNA (cytidine(34)-2'-O)-methyltransferase
total genus 54
structure length 159
sequence length 159
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2014-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4pzkA00
4YPXA 4J3CA 4YQ4A 3IC6A 4YVJA 3KTYA 3ONPA 1NXZA 2CX8A 1TO0A 1VHKA 4CNGA 3OINA 3IEFA 4YQDA 5CO4A 2EGVA 3N4JA 4KGNA 4YQAA 3O7BA 1NS5A 1IPAA 4X3LA 5GMBA 3GYQA 4MCCA 4H3YA 1ZJRA 4YQJA 4YQQA 5FAIA 3KY7A 1X7OA 1V2XA 4YPWA 4YQTA 4YPYA 4PZKA 4CNDA 1UAMA 3NK7A 2O3AA 2QMMA 5GM8A 1GZ0A 2YY8A 4FAKA 1J85A 3AIAA 1VHYA 3DCMX 4YQ9A 2V3KA 4RG1A 1P9PA 1UALA 1VH0A 3N4KA 1UAJA 4L69A 2I6DA 2Z0YA 4CNFA 3KW2A 4XBOA 1X7PA 3BBDA 3BBHA 4YQPA 4YVIA 3E5YA 3AI9X 2EGWA 1UAKA 3BBEA 4X3MA 4YQIA 4YQSA 4YQ1A 4YQGA 4E8BA 3NK6A 1OY5A 3AXZA 4YQLA 2V3JA 4CNEA 1O6DA 4YQBA 4YVKA 3OIIA 4YVGA 2QWVA 4MCBA 4YQCA 4YQ2A 4YQ7A 4KDZA 5D9FA 1MXIA 5GMCA 4YQ0A 4YQRA 4YQ5A 3QUVA 1Z85A 1V6ZA 4YQOA 4JAKA 4YQ3A 4MCDA 4YPZA 1K3RA 4H3ZA 4YQ6A 4YQNA 4IG6A 4JALA 3ILKA 3L8UA 4YVHA 2HA8A 4YQ8A 4YQKA 3KNUA 3OIJA
chains in the Genus database with same CATH superfamily
4YPXA 4J3CA 4YQ4A 3IC6A 4YVJA 3KTYA 3ONPA 1NXZA 2CX8A 1TO0A 1VHKA 4CNGA 3OINA 3IEFA 4YQDA 5CO4A 2EGVA 3N4JA 4KGNA 4FMWA 4YQAA 3O7BA 1NS5A 1IPAA 4X3LA 5GMBA 3GYQA 4MCCA 4H3YA 1ZJRA 4YQJA 4YQQA 5FAIA 3KY7A 1X7OA 1V2XA 4YPWA 4YQTA 4YPYA 4PZKA 4CNDA 1UAMA 3NK7A 2O3AA 2QMMA 5GM8A 1GZ0A 2YY8A 4FAKA 1J85A 3AIAA 1VHYA 3DCMX 4YQ9A 2V3KA 4RG1A 1P9PA 1UALA 1VH0A 3N4KA 1UAJA 4L69A 2I6DA 2Z0YA 4CNFA 3KW2A 4XBOA 1X7PA 3BBDA 3BBHA 4YQPA 4YVIA 3E5YA 3AI9X 4JWHA 2EGWA 1UAKA 3BBEA 4X3MA 4YQIA 4YQSA 4YQ1A 4YQGA 4E8BA 3NK6A 1OY5A 3AXZA 4YQLA 2V3JA 4CNEA 1O6DA 4YQBA 4YVKA 4JWFA 3OIIA 4YVGA 2QWVA 4MCBA 4YQCA 4YQ2A 4YQ7A 4KDZA 5D9FA 1MXIA 5GMCA 4YQ0A 4YQRA 4YQ5A 3QUVA 1Z85A 1V6ZA 4YQOA 4JAKA 4YQ3A 4MCDA 4JWJA 1K3RA 4H3ZA 4YPZA 4YQ6A 4YQNA 4IG6A 4JALA 3ILKA 3L8UA 4YVHA 2HA8A 4YQ8A 4YQKA 4JWGA 3KNUA 3OIJA
chains in the Genus database with same CATH topology
4YPXA 4J3CA 4YQ4A 3IC6A 4YVJA 3KTYA 3ONPA 1NXZA 2CX8A 1TO0A 1VHKA 4CNGA 3OINA 3IEFA 4YQDA 5CO4A 2EGVA 3N4JA 4KGNA 4FMWA 4YQAA 3O7BA 1NS5A 1IPAA 4X3LA 5GMBA 3GYQA 4MCCA 4H3YA 1ZJRA 4YQJA 4YQQA 5FAIA 3KY7A 1X7OA 1V2XA 4YPWA 4YQTA 4YPYA 4PZKA 4CNDA 1UAMA 3NK7A 2O3AA 2QMMA 5GM8A 1GZ0A 2YY8A 4FAKA 1J85A 3AIAA 1VHYA 3DCMX 4YQ9A 2V3KA 4RG1A 1P9PA 1UALA 1VH0A 3N4KA 1UAJA 4L69A 2I6DA 2Z0YA 4CNFA 3KW2A 4XBOA 1X7PA 3BBDA 3BBHA 4YQPA 4YVIA 3E5YA 3AI9X 4JWHA 2EGWA 1UAKA 3BBEA 4X3MA 4YQIA 4YQSA 4YQ1A 4YQGA 4E8BA 3NK6A 1OY5A 3AXZA 4YQLA 2V3JA 4CNEA 1O6DA 4YQBA 4YVKA 4JWFA 3OIIA 4YVGA 2QWVA 4MCBA 4YQCA 4YQ2A 4YQ7A 4KDZA 5D9FA 1MXIA 5GMCA 4YQ0A 4YQRA 4YQ5A 3QUVA 1Z85A 1V6ZA 4YQOA 4JAKA 4YQ3A 4MCDA 4JWJA 1K3RA 4H3ZA 4YPZA 4YQ6A 4YQNA 4IG6A 4JALA 3ILKA 3L8UA 4YVHA 2HA8A 4YQ8A 4YQKA 4JWGA 3KNUA 3OIJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YPX A;  4J3C A;  4YQ4 A;  3IC6 A;  4YVJ A;  3KTY A;  3ONP A;  1NXZ A;  2CX8 A;  1TO0 A;  1VHK A;  4CNG A;  3OIN A;  3IEF A;  4YQD A;  5CO4 A;  2EGV A;  3N4J A;  4KGN A;  4YQA A;  3O7B A;  1NS5 A;  1IPA A;  4X3L A;  5GMB A;  3GYQ A;  4MCC A;  4H3Y A;  1ZJR A;  4YQJ A;  4YQQ A;  5FAI A;  3KY7 A;  1X7O A;  1V2X A;  4YPW A;  4YQT A;  4YPY A;  4PZK A;  4CND A;  1UAM A;  3NK7 A;  2O3A A;  2QMM A;  5GM8 A;  1GZ0 A;  2YY8 A;  4FAK A;  1J85 A;  3AIA A;  1VHY A;  3DCM X;  4YQ9 A;  2V3K A;  4RG1 A;  1P9P A;  1UAL A;  1VH0 A;  3N4K A;  1UAJ A;  4L69 A;  2I6D A;  2Z0Y A;  4CNF A;  3KW2 A;  4XBO A;  1X7P A;  3BBD A;  3BBH A;  4YQP A;  4YVI A;  3E5Y A;  3AI9 X;  2EGW A;  1UAK A;  3BBE A;  4X3M A;  4YQI A;  4YQS A;  4YQ1 A;  4YQG A;  4E8B A;  3NK6 A;  1OY5 A;  3AXZ A;  4YQL A;  2V3J A;  4CNE A;  1O6D A;  4YQB A;  4YVK A;  3OII A;  4YVG A;  2QWV A;  4MCB A;  4YQC A;  4YQ2 A;  4YQ7 A;  4KDZ A;  5D9F A;  1MXI A;  5GMC A;  4YQ0 A;  4YQR A;  4YQ5 A;  3QUV A;  1Z85 A;  1V6Z A;  4YQO A;  4JAK A;  4YQ3 A;  4MCD A;  4YPZ A;  1K3R A;  4H3Z A;  4YQ6 A;  4YQN A;  4IG6 A;  4JAL A;  3ILK A;  3L8U A;  4YVH A;  2HA8 A;  4YQ8 A;  4YQK A;  3KNU A;  3OIJ A; 
#chains in the Genus database with same CATH topology
 4YPX A;  4J3C A;  4YQ4 A;  3IC6 A;  4YVJ A;  3KTY A;  3ONP A;  1NXZ A;  2CX8 A;  1TO0 A;  1VHK A;  4CNG A;  3OIN A;  3IEF A;  4YQD A;  5CO4 A;  2EGV A;  3N4J A;  4KGN A;  4FMW A;  4YQA A;  3O7B A;  1NS5 A;  1IPA A;  4X3L A;  5GMB A;  3GYQ A;  4MCC A;  4H3Y A;  1ZJR A;  4YQJ A;  4YQQ A;  5FAI A;  3KY7 A;  1X7O A;  1V2X A;  4YPW A;  4YQT A;  4YPY A;  4PZK A;  4CND A;  1UAM A;  3NK7 A;  2O3A A;  2QMM A;  5GM8 A;  1GZ0 A;  2YY8 A;  4FAK A;  1J85 A;  3AIA A;  1VHY A;  3DCM X;  4YQ9 A;  2V3K A;  4RG1 A;  1P9P A;  1UAL A;  1VH0 A;  3N4K A;  1UAJ A;  4L69 A;  2I6D A;  2Z0Y A;  4CNF A;  3KW2 A;  4XBO A;  1X7P A;  3BBD A;  3BBH A;  4YQP A;  4YVI A;  3E5Y A;  3AI9 X;  4JWH A;  2EGW A;  1UAK A;  3BBE A;  4X3M A;  4YQI A;  4YQS A;  4YQ1 A;  4YQG A;  4E8B A;  3NK6 A;  1OY5 A;  3AXZ A;  4YQL A;  2V3J A;  4CNE A;  1O6D A;  4YQB A;  4YVK A;  4JWF A;  3OII A;  4YVG A;  2QWV A;  4MCB A;  4YQC A;  4YQ2 A;  4YQ7 A;  4KDZ A;  5D9F A;  1MXI A;  5GMC A;  4YQ0 A;  4YQR A;  4YQ5 A;  3QUV A;  1Z85 A;  1V6Z A;  4YQO A;  4JAK A;  4YQ3 A;  4MCD A;  4JWJ A;  1K3R A;  4H3Z A;  4YPZ A;  4YQ6 A;  4YQN A;  4IG6 A;  4JAL A;  3ILK A;  3L8U A;  4YVH A;  2HA8 A;  4YQ8 A;  4YQK A;  4JWG A;  3KNU A;  3OIJ A; 
#chains in the Genus database with same CATH homology
 4YPX A;  4J3C A;  4YQ4 A;  3IC6 A;  4YVJ A;  3KTY A;  3ONP A;  1NXZ A;  2CX8 A;  1TO0 A;  1VHK A;  4CNG A;  3OIN A;  3IEF A;  4YQD A;  5CO4 A;  2EGV A;  3N4J A;  4KGN A;  4FMW A;  4YQA A;  3O7B A;  1NS5 A;  1IPA A;  4X3L A;  5GMB A;  3GYQ A;  4MCC A;  4H3Y A;  1ZJR A;  4YQJ A;  4YQQ A;  5FAI A;  3KY7 A;  1X7O A;  1V2X A;  4YPW A;  4YQT A;  4YPY A;  4PZK A;  4CND A;  1UAM A;  3NK7 A;  2O3A A;  2QMM A;  5GM8 A;  1GZ0 A;  2YY8 A;  4FAK A;  1J85 A;  3AIA A;  1VHY A;  3DCM X;  4YQ9 A;  2V3K A;  4RG1 A;  1P9P A;  1UAL A;  1VH0 A;  3N4K A;  1UAJ A;  4L69 A;  2I6D A;  2Z0Y A;  4CNF A;  3KW2 A;  4XBO A;  1X7P A;  3BBD A;  3BBH A;  4YQP A;  4YVI A;  3E5Y A;  3AI9 X;  4JWH A;  2EGW A;  1UAK A;  3BBE A;  4X3M A;  4YQI A;  4YQS A;  4YQ1 A;  4YQG A;  4E8B A;  3NK6 A;  1OY5 A;  3AXZ A;  4YQL A;  2V3J A;  4CNE A;  1O6D A;  4YQB A;  4YVK A;  4JWF A;  3OII A;  4YVG A;  2QWV A;  4MCB A;  4YQC A;  4YQ2 A;  4YQ7 A;  4KDZ A;  5D9F A;  1MXI A;  5GMC A;  4YQ0 A;  4YQR A;  4YQ5 A;  3QUV A;  1Z85 A;  1V6Z A;  4YQO A;  4JAK A;  4YQ3 A;  4MCD A;  4JWJ A;  1K3R A;  4H3Z A;  4YPZ A;  4YQ6 A;  4YQN A;  4IG6 A;  4JAL A;  3ILK A;  3L8U A;  4YVH A;  2HA8 A;  4YQ8 A;  4YQK A;  4JWG A;  3KNU A;  3OIJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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