3N4KA

Putative rna methyltransferase from yersinia pestis in complex with s-adenosyl-l-homocysteine.
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
Knots found
sequence length
163
structure length
163
Chain Sequence
NAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords RNA methyltransferase
publication title X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
rcsb
source organism Yersinia pestis
total genus 52
structure length 163
sequence length 163
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2010-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3n4kA00
1NXZA 4MCDA 5CO4A 4CNEA 4YQ0A 4XBOA 4H3YA 3E5YA 2EGWA 1TO0A 3GYQA 4YQJA 4YQKA 4YQ4A 4YQTA 4YQ7A 2QWVA 4MCBA 3KTYA 4KGNA 4L69A 1UAKA 3ILKA 4YQ2A 2O3AA 1UAJA 2YY8A 1MXIA 4YQAA 1K3RA 3ONPA 3KNUA 1V2XA 3DCMX 3NK7A 1VHYA 1Z85A 4RG1A 4YVKA 3QUVA 4YQ9A 4YQGA 2V3JA 4YPZA 1J85A 3BBHA 5FAIA 4FAKA 3BBEA 4JAKA 4CNFA 4CNDA 5GM8A 2CX8A 3AIAA 2QMMA 4MCCA 4YVGA 1VHKA 1O6DA 4YQ1A 4YQDA 4IG6A 4YQQA 4H3ZA 4YQLA 2V3KA 2Z0YA 5GMCA 3N4KA 5D9FA 1UALA 3AI9X 4YQ8A 4YPXA 4YQPA 4CNGA 1P9PA 4PZKA 4YQOA 5GMBA 4YQIA 1ZJRA 4YVIA 3NK6A 4YPYA 1IPAA 1VH0A 3N4JA 1X7OA 2I6DA 3IC6A 4YQBA 4YVJA 2EGVA 4YQ6A 4JALA 4YVHA 4YPWA 4J3CA 3KY7A 1X7PA 3O7BA 3OIJA 4YQCA 4YQ5A 4YQ3A 4E8BA 4X3MA 3L8UA 3KW2A 4YQSA 4KDZA 1NS5A 1GZ0A 4X3LA 4YQNA 3OINA 3AXZA 4YQRA 1V6ZA 1OY5A 3OIIA 2HA8A 3IEFA 1UAMA 3BBDA
chains in the Genus database with same CATH superfamily
1NXZA 4MCDA 5CO4A 4CNEA 4YQ0A 4XBOA 4H3YA 3E5YA 2EGWA 1TO0A 3GYQA 4YQJA 4YQKA 4YQ4A 4YQTA 4YQ7A 2QWVA 4MCBA 3KTYA 4KGNA 4L69A 1UAKA 3ILKA 4YQ2A 2O3AA 1UAJA 2YY8A 1MXIA 4YQAA 1K3RA 4FMWA 3ONPA 3KNUA 1V2XA 3DCMX 3NK7A 1VHYA 4JWJA 1Z85A 4RG1A 4YVKA 3QUVA 4YQ9A 4YQGA 2V3JA 4YPZA 1J85A 3BBHA 5FAIA 4FAKA 3BBEA 4JAKA 4CNFA 4CNDA 5GM8A 2CX8A 3AIAA 2QMMA 4MCCA 4YVGA 1VHKA 1O6DA 4YQ1A 4YQDA 4IG6A 4YQQA 4H3ZA 4JWHA 4YQLA 2V3KA 2Z0YA 5GMCA 3N4KA 5D9FA 1UALA 3AI9X 4YQ8A 4YPXA 4YQPA 4CNGA 1P9PA 4PZKA 4YQOA 5GMBA 4YQIA 1ZJRA 4YVIA 3NK6A 4YPYA 1IPAA 1VH0A 3N4JA 1X7OA 2I6DA 3IC6A 4YQBA 4YVJA 2EGVA 4YQ6A 4JALA 4YVHA 4YPWA 4J3CA 3KY7A 1X7PA 3O7BA 4JWFA 3OIJA 4YQCA 4YQ5A 4YQ3A 4E8BA 4X3MA 3L8UA 3KW2A 4YQSA 4KDZA 1NS5A 1GZ0A 4X3LA 4JWGA 4YQNA 3OINA 3AXZA 4YQRA 1V6ZA 1OY5A 3OIIA 2HA8A 3IEFA 1UAMA 3BBDA
chains in the Genus database with same CATH topology
1NXZA 4MCDA 5CO4A 4CNEA 4YQ0A 4XBOA 4H3YA 3E5YA 2EGWA 1TO0A 3GYQA 4YQJA 4YQKA 4YQ4A 4YQTA 4YQ7A 2QWVA 4MCBA 3KTYA 4KGNA 4L69A 1UAKA 3ILKA 4YQ2A 2O3AA 1UAJA 2YY8A 1MXIA 4YQAA 1K3RA 4FMWA 3ONPA 3KNUA 1V2XA 3DCMX 3NK7A 1VHYA 4JWJA 1Z85A 4RG1A 4YVKA 3QUVA 4YQ9A 4YQGA 2V3JA 4YPZA 1J85A 3BBHA 5FAIA 4FAKA 3BBEA 4JAKA 4CNFA 4CNDA 5GM8A 2CX8A 3AIAA 2QMMA 4MCCA 4YVGA 1VHKA 1O6DA 4YQ1A 4YQDA 4IG6A 4YQQA 4H3ZA 4JWHA 4YQLA 2V3KA 2Z0YA 5GMCA 3N4KA 5D9FA 1UALA 3AI9X 4YQ8A 4YPXA 4YQPA 4CNGA 1P9PA 4PZKA 4YQOA 5GMBA 4YQIA 1ZJRA 4YVIA 3NK6A 4YPYA 1IPAA 1VH0A 3N4JA 1X7OA 2I6DA 3IC6A 4YQBA 4YVJA 2EGVA 4YQ6A 4JALA 4YVHA 4YPWA 4J3CA 3KY7A 1X7PA 3O7BA 4JWFA 3OIJA 4YQCA 4YQ5A 4YQ3A 4E8BA 4X3MA 3L8UA 3KW2A 4YQSA 4KDZA 1NS5A 1GZ0A 4X3LA 4JWGA 4YQNA 3OINA 3AXZA 4YQRA 1V6ZA 1OY5A 3OIIA 2HA8A 3IEFA 1UAMA 3BBDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NXZ A;  4MCD A;  5CO4 A;  4CNE A;  4YQ0 A;  4XBO A;  4H3Y A;  3E5Y A;  2EGW A;  1TO0 A;  3GYQ A;  4YQJ A;  4YQK A;  4YQ4 A;  4YQT A;  4YQ7 A;  2QWV A;  4MCB A;  3KTY A;  4KGN A;  4L69 A;  1UAK A;  3ILK A;  4YQ2 A;  2O3A A;  1UAJ A;  2YY8 A;  1MXI A;  4YQA A;  1K3R A;  3ONP A;  3KNU A;  1V2X A;  3DCM X;  3NK7 A;  1VHY A;  1Z85 A;  4RG1 A;  4YVK A;  3QUV A;  4YQ9 A;  4YQG A;  2V3J A;  4YPZ A;  1J85 A;  3BBH A;  5FAI A;  4FAK A;  3BBE A;  4JAK A;  4CNF A;  4CND A;  5GM8 A;  2CX8 A;  3AIA A;  2QMM A;  4MCC A;  4YVG A;  1VHK A;  1O6D A;  4YQ1 A;  4YQD A;  4IG6 A;  4YQQ A;  4H3Z A;  4YQL A;  2V3K A;  2Z0Y A;  5GMC A;  3N4K A;  5D9F A;  1UAL A;  3AI9 X;  4YQ8 A;  4YPX A;  4YQP A;  4CNG A;  1P9P A;  4PZK A;  4YQO A;  5GMB A;  4YQI A;  1ZJR A;  4YVI A;  3NK6 A;  4YPY A;  1IPA A;  1VH0 A;  3N4J A;  1X7O A;  2I6D A;  3IC6 A;  4YQB A;  4YVJ A;  2EGV A;  4YQ6 A;  4JAL A;  4YVH A;  4YPW A;  4J3C A;  3KY7 A;  1X7P A;  3O7B A;  3OIJ A;  4YQC A;  4YQ5 A;  4YQ3 A;  4E8B A;  4X3M A;  3L8U A;  3KW2 A;  4YQS A;  4KDZ A;  1NS5 A;  1GZ0 A;  4X3L A;  4YQN A;  3OIN A;  3AXZ A;  4YQR A;  1V6Z A;  1OY5 A;  3OII A;  2HA8 A;  3IEF A;  1UAM A;  3BBD A; 
#chains in the Genus database with same CATH topology
 1NXZ A;  4MCD A;  5CO4 A;  4CNE A;  4YQ0 A;  4XBO A;  4H3Y A;  3E5Y A;  2EGW A;  1TO0 A;  3GYQ A;  4YQJ A;  4YQK A;  4YQ4 A;  4YQT A;  4YQ7 A;  2QWV A;  4MCB A;  3KTY A;  4KGN A;  4L69 A;  1UAK A;  3ILK A;  4YQ2 A;  2O3A A;  1UAJ A;  2YY8 A;  1MXI A;  4YQA A;  1K3R A;  4FMW A;  3ONP A;  3KNU A;  1V2X A;  3DCM X;  3NK7 A;  1VHY A;  4JWJ A;  1Z85 A;  4RG1 A;  4YVK A;  3QUV A;  4YQ9 A;  4YQG A;  2V3J A;  4YPZ A;  1J85 A;  3BBH A;  5FAI A;  4FAK A;  3BBE A;  4JAK A;  4CNF A;  4CND A;  5GM8 A;  2CX8 A;  3AIA A;  2QMM A;  4MCC A;  4YVG A;  1VHK A;  1O6D A;  4YQ1 A;  4YQD A;  4IG6 A;  4YQQ A;  4H3Z A;  4JWH A;  4YQL A;  2V3K A;  2Z0Y A;  5GMC A;  3N4K A;  5D9F A;  1UAL A;  3AI9 X;  4YQ8 A;  4YPX A;  4YQP A;  4CNG A;  1P9P A;  4PZK A;  4YQO A;  5GMB A;  4YQI A;  1ZJR A;  4YVI A;  3NK6 A;  4YPY A;  1IPA A;  1VH0 A;  3N4J A;  1X7O A;  2I6D A;  3IC6 A;  4YQB A;  4YVJ A;  2EGV A;  4YQ6 A;  4JAL A;  4YVH A;  4YPW A;  4J3C A;  3KY7 A;  1X7P A;  3O7B A;  4JWF A;  3OIJ A;  4YQC A;  4YQ5 A;  4YQ3 A;  4E8B A;  4X3M A;  3L8U A;  3KW2 A;  4YQS A;  4KDZ A;  1NS5 A;  1GZ0 A;  4X3L A;  4JWG A;  4YQN A;  3OIN A;  3AXZ A;  4YQR A;  1V6Z A;  1OY5 A;  3OII A;  2HA8 A;  3IEF A;  1UAM A;  3BBD A; 
#chains in the Genus database with same CATH homology
 1NXZ A;  4MCD A;  5CO4 A;  4CNE A;  4YQ0 A;  4XBO A;  4H3Y A;  3E5Y A;  2EGW A;  1TO0 A;  3GYQ A;  4YQJ A;  4YQK A;  4YQ4 A;  4YQT A;  4YQ7 A;  2QWV A;  4MCB A;  3KTY A;  4KGN A;  4L69 A;  1UAK A;  3ILK A;  4YQ2 A;  2O3A A;  1UAJ A;  2YY8 A;  1MXI A;  4YQA A;  1K3R A;  4FMW A;  3ONP A;  3KNU A;  1V2X A;  3DCM X;  3NK7 A;  1VHY A;  4JWJ A;  1Z85 A;  4RG1 A;  4YVK A;  3QUV A;  4YQ9 A;  4YQG A;  2V3J A;  4YPZ A;  1J85 A;  3BBH A;  5FAI A;  4FAK A;  3BBE A;  4JAK A;  4CNF A;  4CND A;  5GM8 A;  2CX8 A;  3AIA A;  2QMM A;  4MCC A;  4YVG A;  1VHK A;  1O6D A;  4YQ1 A;  4YQD A;  4IG6 A;  4YQQ A;  4H3Z A;  4JWH A;  4YQL A;  2V3K A;  2Z0Y A;  5GMC A;  3N4K A;  5D9F A;  1UAL A;  3AI9 X;  4YQ8 A;  4YPX A;  4YQP A;  4CNG A;  1P9P A;  4PZK A;  4YQO A;  5GMB A;  4YQI A;  1ZJR A;  4YVI A;  3NK6 A;  4YPY A;  1IPA A;  1VH0 A;  3N4J A;  1X7O A;  2I6D A;  3IC6 A;  4YQB A;  4YVJ A;  2EGV A;  4YQ6 A;  4JAL A;  4YVH A;  4YPW A;  4J3C A;  3KY7 A;  1X7P A;  3O7B A;  4JWF A;  3OIJ A;  4YQC A;  4YQ5 A;  4YQ3 A;  4E8B A;  4X3M A;  3L8U A;  3KW2 A;  4YQS A;  4KDZ A;  1NS5 A;  1GZ0 A;  4X3L A;  4JWG A;  4YQN A;  3OIN A;  3AXZ A;  4YQR A;  1V6Z A;  1OY5 A;  3OII A;  2HA8 A;  3IEF A;  1UAM A;  3BBD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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