The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
75
|
Knots found |
|
sequence length |
216
|
structure length |
216
|
Chain Sequence |
b'MGSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLRDFEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITAGDTTLIEFKDVGLRDIVRGRDVLLFREKGGRFEFSELLDGDVAVCIGAFPHGDFFEETLRELGEFKEVSLGTESYTSLYVTSRVLCEYERVRAH'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis.
pubmed doi rcsb |
| molecule keywords |
Ribosome biogenesis Nep1 RNA methyltransferase
|
| source organism |
Archaeoglobus fulgidus
|
| molecule tags |
Transferase
|
| total genus |
75
|
| structure length |
216
|
| sequence length |
216
|
| other databases |
 KnotProt 2.0: K +31
|
| ec nomenclature | |
| pdb deposition date | 2010-07-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03587 | EMG1 | EMG1/NEP1 methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the Genus database with same CATH superfamily 1X7O A; 4RG1 A; 5GMC A; 4IG6 A; 4L69 A; 2QMM A; 1Z85 A; 3KW2 A; 2HA8 A; 4CND A; 4YQR A; 1UAJ A; 2V3J A; 1OY5 A; 1ZJR A; 2I6D A; 3L8U A; 4YQ8 A; 4H3Z A; 3BBH A; 1NXZ A; 4X3M A; 1X7P A; 4PZK A; 4YVH A; 4FAK A; 1NS5 A; 4MCC A; 3NK7 A; 4YQP A; 4YQI A; 3NK6 A; 4YQC A; 3E5Y A; 4YQ4 A; 3IC6 A; 3BBE A; 1GZ0 A; 3OII A; 4JAK A; 4JAL A; 4YQN A; 3ILK A; 4YQ6 A; 5GM8 A; 4YPY A; 2O3A A; 4YQS A; 3AXZ A; 2Z0Y A; 1UAM A; 1UAK A; 1V6Z A; 4YQQ A; 4CNF A; 1J85 A; 4YQ3 A; 4YQL A; 5CO4 A; 1O6D A; 3N4K A; 4YQ7 A; 3O7B A; 1MXI A; 3IEF A; 4CNE A; 3KTY A; 4YPW A; 2QWV A; 5D9F A; 3KY7 A; 3KNU A; 1V2X A; 4YQA A; 1K3R A; 4YQT A; 4E8B A; 1VHY A; 2CX8 A; 4YQO A; 5FAI A; 4YVK A; 4YVI A; 1P9P A; 3QUV A; 3AIA A; 4YQJ A; 3OIJ A; 1VH0 A; 4MCD A; 4X3L A; 4YQ5 A; 2EGV A; 4KGN A; 4J3C A; 4YPZ A; 4YVG A; 4YVJ A; 1TO0 A; 3OIN A; 4CNG A; 2EGW A; 4H3Y A; 4YQ2 A; 4YPX A; 4YQD A; 1IPA A; 3ONP A; 3N4J A; 4MCB A; 3GYQ A; 1UAL A; 2V3K A; 4YQK A; 3BBD A; 2YY8 A; 5GMB A; 4YQ1 A; 4XBO A; 4YQ0 A; 4YQB A; 4YQG A; 4YQ9 A; 3AI9 X; 3DCM X; 1VHK A; 4KDZ A; #chains in the Genus database with same CATH topology 1X7O A; 4RG1 A; 5GMC A; 4IG6 A; 4L69 A; 2QMM A; 1Z85 A; 3KW2 A; 2HA8 A; 4CND A; 4YQR A; 1UAJ A; 2V3J A; 1OY5 A; 4JWG A; 1ZJR A; 2I6D A; 3L8U A; 4JWF A; 4YQ8 A; 4H3Z A; 3BBH A; 1NXZ A; 4X3M A; 1X7P A; 4PZK A; 4YVH A; 4FAK A; 1NS5 A; 4MCC A; 3NK7 A; 4YQP A; 4YQI A; 3NK6 A; 4YQC A; 3E5Y A; 4YQ4 A; 3IC6 A; 3BBE A; 1GZ0 A; 3OII A; 4JAK A; 4JAL A; 4YQN A; 3ILK A; 4YQ6 A; 5GM8 A; 4YPY A; 2O3A A; 4YQS A; 3AXZ A; 2Z0Y A; 1UAM A; 1UAK A; 4FMW A; 1V6Z A; 4YQQ A; 4JWH A; 4CNF A; 1J85 A; 4YQ3 A; 4YQL A; 5CO4 A; 1O6D A; 3N4K A; 4YQ7 A; 3O7B A; 1MXI A; 3IEF A; 4CNE A; 3KTY A; 4YPW A; 2QWV A; 5D9F A; 3KY7 A; 3KNU A; 1V2X A; 4YQA A; 1K3R A; 4YQT A; 4E8B A; 1VHY A; 2CX8 A; 4YQO A; 5FAI A; 4YVK A; 4YVI A; 1P9P A; 3QUV A; 3AIA A; 4YQJ A; 3OIJ A; 1VH0 A; 4MCD A; 4X3L A; 4YQ5 A; 2EGV A; 4KGN A; 4J3C A; 4YPZ A; 4YVG A; 4YVJ A; 1TO0 A; 3OIN A; 4JWJ A; 4CNG A; 2EGW A; 4H3Y A; 4YQ2 A; 4YPX A; 4YQD A; 1IPA A; 3ONP A; 3N4J A; 4MCB A; 3GYQ A; 1UAL A; 2V3K A; 4YQK A; 3BBD A; 2YY8 A; 5GMB A; 4YQ1 A; 4XBO A; 4YQ0 A; 4YQB A; 4YQG A; 4YQ9 A; 3AI9 X; 3DCM X; 1VHK A; 4KDZ A; #chains in the Genus database with same CATH homology 1X7O A; 4RG1 A; 5GMC A; 4IG6 A; 4L69 A; 2QMM A; 1Z85 A; 3KW2 A; 2HA8 A; 4CND A; 4YQR A; 1UAJ A; 2V3J A; 1OY5 A; 4JWG A; 1ZJR A; 2I6D A; 3L8U A; 4JWF A; 4YQ8 A; 4H3Z A; 3BBH A; 1NXZ A; 4X3M A; 1X7P A; 4PZK A; 4YVH A; 4FAK A; 1NS5 A; 4MCC A; 3NK7 A; 4YQP A; 4YQI A; 3NK6 A; 4YQC A; 3E5Y A; 4YQ4 A; 3IC6 A; 3BBE A; 1GZ0 A; 3OII A; 4JAK A; 4JAL A; 4YQN A; 3ILK A; 4YQ6 A; 5GM8 A; 4YPY A; 2O3A A; 4YQS A; 3AXZ A; 2Z0Y A; 1UAM A; 1UAK A; 4FMW A; 1V6Z A; 4YQQ A; 4JWH A; 4CNF A; 1J85 A; 4YQ3 A; 4YQL A; 5CO4 A; 1O6D A; 3N4K A; 4YQ7 A; 3O7B A; 1MXI A; 3IEF A; 4CNE A; 3KTY A; 4YPW A; 2QWV A; 5D9F A; 3KY7 A; 3KNU A; 1V2X A; 4YQA A; 1K3R A; 4YQT A; 4E8B A; 1VHY A; 2CX8 A; 4YQO A; 5FAI A; 4YVK A; 4YVI A; 1P9P A; 3QUV A; 3AIA A; 4YQJ A; 3OIJ A; 1VH0 A; 4MCD A; 4X3L A; 4YQ5 A; 2EGV A; 4KGN A; 4J3C A; 4YPZ A; 4YVG A; 4YVJ A; 1TO0 A; 3OIN A; 4JWJ A; 4CNG A; 2EGW A; 4H3Y A; 4YQ2 A; 4YPX A; 4YQD A; 1IPA A; 3ONP A; 3N4J A; 4MCB A; 3GYQ A; 1UAL A; 2V3K A; 4YQK A; 3BBD A; 2YY8 A; 5GMB A; 4YQ1 A; 4XBO A; 4YQ0 A; 4YQB A; 4YQG A; 4YQ9 A; 3AI9 X; 3DCM X; 1VHK A; 4KDZ A;
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