2QWVA

Crystal structure of unknown function protein vca1059
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
Knots found
sequence length
202
structure length
188
Chain Sequence
TMRSFILRARSAPTDSQRLLDEIGGKCHTEILAHCMMNSLFTAQSHREDVVIHLVLESTRDYSRTITVEANEIGFHEAALIALLVKALDASVGMGKEQTRVVQPGLTVRTISFEALLGELAEHHSLYMMDKKGDSIRDIKIGPNPCFILTDSMKRLGVEKISLGPKMLFASQCVTLIHNEIDHQEAGW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords UPF0217 protein VC_A1059
publication title Crystal structure of unknown function protein VCA1059.
rcsb
source organism Vibrio cholerae o1 biovar eltor str. n16961
total genus 49
structure length 188
sequence length 202
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2007-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04013 Methyltrn_RNA_2 Putative SAM-dependent RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2qwvA00
1X7PA 4J3CA 4X3LA 4YVJA 4YQGA 2QMMA 4E8BA 4YQ6A 4YPWA 3BBDA 4H3YA 2EGVA 3O7BA 3QUVA 4CNFA 4YQAA 4MCDA 5D9FA 3IEFA 4YQ4A 4YVKA 1NXZA 1P9PA 4YPYA 4YQLA 2O3AA 1Z85A 4KGNA 4YQ2A 3AXZA 3OIJA 3DCMX 1GZ0A 4YQNA 2EGWA 3IC6A 4YQ7A 3GYQA 4PZKA 2V3JA 1X7OA 1VH0A 5CO4A 4YQPA 3ONPA 2HA8A 4YQIA 4CNEA 3NK6A 4YQ3A 4YQCA 5GMBA 4FAKA 3L8UA 5FAIA 4MCBA 3BBHA 3OINA 1MXIA 1IPAA 3KW2A 1OY5A 1UAMA 4YVIA 4YVHA 4YQKA 4YQRA 4YQ0A 3AIAA 1UAKA 1ZJRA 4YQJA 4YQOA 5GM8A 2Z0YA 1J85A 1O6DA 3ILKA 1V6ZA 1VHYA 4YQQA 4YQDA 4H3ZA 3N4JA 1UAJA 4X3MA 2V3KA 3KNUA 3BBEA 1UALA 4RG1A 1K3RA 3KY7A 4YVGA 4YQ8A 4JALA 4YQTA 2YY8A 3E5YA 3N4KA 2I6DA 4XBOA 4IG6A 4YQ9A 4YQ5A 1V2XA 5GMCA 4YQBA 3NK7A 4CNGA 4YPXA 4YQ1A 4YQSA 1TO0A 1VHKA 4CNDA 4JAKA 2CX8A 1NS5A 3OIIA 4L69A 4MCCA 3AI9X 4KDZA 4YPZA 2QWVA 3KTYA
chains in the Genus database with same CATH superfamily
1X7PA 4J3CA 4X3LA 4YVJA 4YQGA 2QMMA 4E8BA 4YQ6A 4YPWA 3BBDA 4H3YA 2EGVA 3O7BA 3QUVA 4CNFA 4YQAA 4MCDA 5D9FA 3IEFA 4YQ4A 4YVKA 1NXZA 1P9PA 4YPYA 4YQLA 2O3AA 1Z85A 4KGNA 4YQ2A 3AXZA 3OIJA 3DCMX 1GZ0A 4YQNA 2EGWA 3IC6A 4YQ7A 3GYQA 4PZKA 2V3JA 1X7OA 1VH0A 5CO4A 4FMWA 4YQPA 3ONPA 2HA8A 4YQIA 4CNEA 3NK6A 4YQ3A 4YQCA 5GMBA 4FAKA 3L8UA 5FAIA 4MCBA 3BBHA 3OINA 1MXIA 1IPAA 3KW2A 1OY5A 1UAMA 4JWGA 4YVIA 4YVHA 4YQKA 4YQRA 4YQ0A 3AIAA 1UAKA 1ZJRA 4YQJA 4YQOA 5GM8A 2Z0YA 1J85A 1O6DA 3ILKA 1V6ZA 1VHYA 4YQQA 4YQDA 4H3ZA 3N4JA 1UAJA 2V3KA 4X3MA 3KNUA 3BBEA 1UALA 4RG1A 1K3RA 3KY7A 4YVGA 4YQ8A 4JALA 4JWFA 4YQTA 2YY8A 3E5YA 3N4KA 4JWHA 2I6DA 4XBOA 4IG6A 4YQ9A 4YQ5A 1V2XA 5GMCA 4YQBA 3NK7A 4CNGA 4YPXA 4YQ1A 4JWJA 4YQSA 1TO0A 1VHKA 4CNDA 4JAKA 2CX8A 1NS5A 3OIIA 4L69A 4MCCA 3AI9X 4KDZA 4YPZA 2QWVA 3KTYA
chains in the Genus database with same CATH topology
1X7PA 4J3CA 4X3LA 4YVJA 4YQGA 2QMMA 4E8BA 4YQ6A 4YPWA 3BBDA 4H3YA 2EGVA 3O7BA 3QUVA 4CNFA 4YQAA 4MCDA 5D9FA 3IEFA 4YQ4A 4YVKA 1NXZA 1P9PA 4YPYA 4YQLA 2O3AA 1Z85A 4KGNA 4YQ2A 3AXZA 3OIJA 3DCMX 1GZ0A 4YQNA 2EGWA 3IC6A 4YQ7A 3GYQA 4PZKA 2V3JA 1X7OA 1VH0A 5CO4A 4FMWA 4YQPA 3ONPA 2HA8A 4YQIA 4CNEA 3NK6A 4YQ3A 4YQCA 5GMBA 4FAKA 3L8UA 5FAIA 4MCBA 3BBHA 3OINA 1MXIA 1IPAA 3KW2A 1OY5A 1UAMA 4JWGA 4YVIA 4YVHA 4YQKA 4YQRA 4YQ0A 3AIAA 1UAKA 1ZJRA 4YQJA 4YQOA 5GM8A 2Z0YA 1J85A 1O6DA 3ILKA 1V6ZA 1VHYA 4YQQA 4YQDA 4H3ZA 3N4JA 1UAJA 2V3KA 4X3MA 3KNUA 3BBEA 1UALA 4RG1A 1K3RA 3KY7A 4YVGA 4YQ8A 4JALA 4JWFA 4YQTA 2YY8A 3E5YA 3N4KA 4JWHA 2I6DA 4XBOA 4IG6A 4YQ9A 4YQ5A 1V2XA 5GMCA 4YQBA 3NK7A 4CNGA 4YPXA 4YQ1A 4JWJA 4YQSA 1TO0A 1VHKA 4CNDA 4JAKA 2CX8A 1NS5A 3OIIA 4L69A 4MCCA 3AI9X 4KDZA 4YPZA 2QWVA 3KTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X7P A;  4J3C A;  4X3L A;  4YVJ A;  4YQG A;  2QMM A;  4E8B A;  4YQ6 A;  4YPW A;  3BBD A;  4H3Y A;  2EGV A;  3O7B A;  3QUV A;  4CNF A;  4YQA A;  4MCD A;  5D9F A;  3IEF A;  4YQ4 A;  4YVK A;  1NXZ A;  1P9P A;  4YPY A;  4YQL A;  2O3A A;  1Z85 A;  4KGN A;  4YQ2 A;  3AXZ A;  3OIJ A;  3DCM X;  1GZ0 A;  4YQN A;  2EGW A;  3IC6 A;  4YQ7 A;  3GYQ A;  4PZK A;  2V3J A;  1X7O A;  1VH0 A;  5CO4 A;  4YQP A;  3ONP A;  2HA8 A;  4YQI A;  4CNE A;  3NK6 A;  4YQ3 A;  4YQC A;  5GMB A;  4FAK A;  3L8U A;  5FAI A;  4MCB A;  3BBH A;  3OIN A;  1MXI A;  1IPA A;  3KW2 A;  1OY5 A;  1UAM A;  4YVI A;  4YVH A;  4YQK A;  4YQR A;  4YQ0 A;  3AIA A;  1UAK A;  1ZJR A;  4YQJ A;  4YQO A;  5GM8 A;  2Z0Y A;  1J85 A;  1O6D A;  3ILK A;  1V6Z A;  1VHY A;  4YQQ A;  4YQD A;  4H3Z A;  3N4J A;  1UAJ A;  4X3M A;  2V3K A;  3KNU A;  3BBE A;  1UAL A;  4RG1 A;  1K3R A;  3KY7 A;  4YVG A;  4YQ8 A;  4JAL A;  4YQT A;  2YY8 A;  3E5Y A;  3N4K A;  2I6D A;  4XBO A;  4IG6 A;  4YQ9 A;  4YQ5 A;  1V2X A;  5GMC A;  4YQB A;  3NK7 A;  4CNG A;  4YPX A;  4YQ1 A;  4YQS A;  1TO0 A;  1VHK A;  4CND A;  4JAK A;  2CX8 A;  1NS5 A;  3OII A;  4L69 A;  4MCC A;  3AI9 X;  4KDZ A;  4YPZ A;  2QWV A;  3KTY A; 
#chains in the Genus database with same CATH topology
 1X7P A;  4J3C A;  4X3L A;  4YVJ A;  4YQG A;  2QMM A;  4E8B A;  4YQ6 A;  4YPW A;  3BBD A;  4H3Y A;  2EGV A;  3O7B A;  3QUV A;  4CNF A;  4YQA A;  4MCD A;  5D9F A;  3IEF A;  4YQ4 A;  4YVK A;  1NXZ A;  1P9P A;  4YPY A;  4YQL A;  2O3A A;  1Z85 A;  4KGN A;  4YQ2 A;  3AXZ A;  3OIJ A;  3DCM X;  1GZ0 A;  4YQN A;  2EGW A;  3IC6 A;  4YQ7 A;  3GYQ A;  4PZK A;  2V3J A;  1X7O A;  1VH0 A;  5CO4 A;  4FMW A;  4YQP A;  3ONP A;  2HA8 A;  4YQI A;  4CNE A;  3NK6 A;  4YQ3 A;  4YQC A;  5GMB A;  4FAK A;  3L8U A;  5FAI A;  4MCB A;  3BBH A;  3OIN A;  1MXI A;  1IPA A;  3KW2 A;  1OY5 A;  1UAM A;  4JWG A;  4YVI A;  4YVH A;  4YQK A;  4YQR A;  4YQ0 A;  3AIA A;  1UAK A;  1ZJR A;  4YQJ A;  4YQO A;  5GM8 A;  2Z0Y A;  1J85 A;  1O6D A;  3ILK A;  1V6Z A;  1VHY A;  4YQQ A;  4YQD A;  4H3Z A;  3N4J A;  1UAJ A;  2V3K A;  4X3M A;  3KNU A;  3BBE A;  1UAL A;  4RG1 A;  1K3R A;  3KY7 A;  4YVG A;  4YQ8 A;  4JAL A;  4JWF A;  4YQT A;  2YY8 A;  3E5Y A;  3N4K A;  4JWH A;  2I6D A;  4XBO A;  4IG6 A;  4YQ9 A;  4YQ5 A;  1V2X A;  5GMC A;  4YQB A;  3NK7 A;  4CNG A;  4YPX A;  4YQ1 A;  4JWJ A;  4YQS A;  1TO0 A;  1VHK A;  4CND A;  4JAK A;  2CX8 A;  1NS5 A;  3OII A;  4L69 A;  4MCC A;  3AI9 X;  4KDZ A;  4YPZ A;  2QWV A;  3KTY A; 
#chains in the Genus database with same CATH homology
 1X7P A;  4J3C A;  4X3L A;  4YVJ A;  4YQG A;  2QMM A;  4E8B A;  4YQ6 A;  4YPW A;  3BBD A;  4H3Y A;  2EGV A;  3O7B A;  3QUV A;  4CNF A;  4YQA A;  4MCD A;  5D9F A;  3IEF A;  4YQ4 A;  4YVK A;  1NXZ A;  1P9P A;  4YPY A;  4YQL A;  2O3A A;  1Z85 A;  4KGN A;  4YQ2 A;  3AXZ A;  3OIJ A;  3DCM X;  1GZ0 A;  4YQN A;  2EGW A;  3IC6 A;  4YQ7 A;  3GYQ A;  4PZK A;  2V3J A;  1X7O A;  1VH0 A;  5CO4 A;  4FMW A;  4YQP A;  3ONP A;  2HA8 A;  4YQI A;  4CNE A;  3NK6 A;  4YQ3 A;  4YQC A;  5GMB A;  4FAK A;  3L8U A;  5FAI A;  4MCB A;  3BBH A;  3OIN A;  1MXI A;  1IPA A;  3KW2 A;  1OY5 A;  1UAM A;  4JWG A;  4YVI A;  4YVH A;  4YQK A;  4YQR A;  4YQ0 A;  3AIA A;  1UAK A;  1ZJR A;  4YQJ A;  4YQO A;  5GM8 A;  2Z0Y A;  1J85 A;  1O6D A;  3ILK A;  1V6Z A;  1VHY A;  4YQQ A;  4YQD A;  4H3Z A;  3N4J A;  1UAJ A;  2V3K A;  4X3M A;  3KNU A;  3BBE A;  1UAL A;  4RG1 A;  1K3R A;  3KY7 A;  4YVG A;  4YQ8 A;  4JAL A;  4JWF A;  4YQT A;  2YY8 A;  3E5Y A;  3N4K A;  4JWH A;  2I6D A;  4XBO A;  4IG6 A;  4YQ9 A;  4YQ5 A;  1V2X A;  5GMC A;  4YQB A;  3NK7 A;  4CNG A;  4YPX A;  4YQ1 A;  4JWJ A;  4YQS A;  1TO0 A;  1VHK A;  4CND A;  4JAK A;  2CX8 A;  1NS5 A;  3OII A;  4L69 A;  4MCC A;  3AI9 X;  4KDZ A;  4YPZ A;  2QWV A;  3KTY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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