1O6DA

Crystal structure of a hypothetical protein
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
Knots found
sequence length
147
structure length
147
Chain Sequence
LRVRIAVIGKLDGFIKEGIKHYEKFLRRFCKPEVLEIKRVHRGSIEEIVRKETEDLTNRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIVLEQIFRAFKIIHGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical UPF0247 protein TM0844
publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
source organism Thermotoga maritima
total genus 54
structure length 147
sequence length 147
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.177: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase.
pdb deposition date 2003-11-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1o6dA00
1J85A 4YQ8A 1MXIA 4IG6A 4YQSA 2V3JA 4YQQA 2O3AA 3ONPA 4KDZA 4XBOA 3ILKA 4YPYA 4YQBA 1TO0A 4MCBA 2EGWA 4YQIA 4CNDA 4YQLA 4YQDA 3AXZA 1O6DA 4YQ7A 4YQCA 3NK6A 3BBHA 5FAIA 4KGNA 1UAMA 1NS5A 4MCDA 4YQNA 4YPZA 1X7PA 3KNUA 4JAKA 1UAJA 3AIAA 4RG1A 1UAKA 4YPWA 4YQTA 3IEFA 1V2XA 4YQRA 5GMBA 2CX8A 1P9PA 4MCCA 3QUVA 3DCMX 4JALA 4YQ2A 4YQ9A 1ZJRA 4YQPA 4YQ0A 5GMCA 1NXZA 3E5YA 1VHKA 4H3YA 2QMMA 2YY8A 2V3KA 4FAKA 3KW2A 1GZ0A 4X3MA 2Z0YA 5GM8A 3N4JA 4CNEA 3BBEA 4E8BA 3N4KA 4YQGA 2I6DA 4YVHA 4H3ZA 3IC6A 4YQ3A 3OIIA 1UALA 4YQ5A 3OIJA 2QWVA 1VH0A 4YQJA 3BBDA 3KY7A 4YQ4A 4X3LA 1X7OA 4L69A 3GYQA 1V6ZA 2HA8A 1OY5A 3O7BA 4CNGA 3KTYA 3NK7A 4CNFA 4YVIA 4YVJA 4YVGA 4YPXA 5D9FA 4J3CA 3L8UA 3AI9X 1IPAA 4YQOA 1Z85A 4YQKA 4YQAA 4YVKA 1K3RA 4YQ1A 3OINA 4PZKA 1VHYA 2EGVA 5CO4A 4YQ6A
chains in the Genus database with same CATH superfamily
1J85A 4JWJA 4YQ8A 1MXIA 4IG6A 4YQSA 2V3JA 4YQQA 2O3AA 3ONPA 4KDZA 4XBOA 3ILKA 4JWFA 4YPYA 4YQBA 1TO0A 4MCBA 2EGWA 4YQIA 4CNDA 4YQLA 4YQDA 3AXZA 1O6DA 4YQ7A 4YQCA 3NK6A 3BBHA 5FAIA 4KGNA 1UAMA 1NS5A 4MCDA 4YQNA 4FMWA 4YPZA 1X7PA 3KNUA 4JAKA 1UAJA 3AIAA 4RG1A 1UAKA 4YPWA 4YQTA 3IEFA 1V2XA 4YQRA 5GMBA 2CX8A 1P9PA 4MCCA 3QUVA 3DCMX 4JALA 4YQ2A 4JWGA 4YQ9A 1ZJRA 4YQPA 4YQ0A 5GMCA 1NXZA 3E5YA 4JWHA 1VHKA 4H3YA 2QMMA 2YY8A 2V3KA 4FAKA 3KW2A 1GZ0A 4X3MA 2Z0YA 5GM8A 3N4JA 4CNEA 3BBEA 4E8BA 3N4KA 4YQGA 2I6DA 4YVHA 4H3ZA 3IC6A 4YQ3A 3OIIA 1UALA 4YQ5A 3OIJA 2QWVA 1VH0A 4YQJA 3BBDA 3KY7A 4YQ4A 4X3LA 1X7OA 4L69A 3GYQA 1V6ZA 2HA8A 1OY5A 3O7BA 4CNGA 3KTYA 3NK7A 4CNFA 4YVIA 4YVJA 4YVGA 4YPXA 5D9FA 4J3CA 3L8UA 3AI9X 1IPAA 4YQOA 1Z85A 4YQKA 4YQAA 4YVKA 1K3RA 4YQ1A 3OINA 4PZKA 1VHYA 2EGVA 5CO4A 4YQ6A
chains in the Genus database with same CATH topology
1J85A 4JWJA 4YQ8A 1MXIA 4IG6A 4YQSA 2V3JA 4YQQA 2O3AA 3ONPA 4KDZA 4XBOA 3ILKA 4JWFA 4YPYA 4YQBA 1TO0A 4MCBA 2EGWA 4YQIA 4CNDA 4YQLA 4YQDA 3AXZA 1O6DA 4YQ7A 4YQCA 3NK6A 3BBHA 5FAIA 4KGNA 1UAMA 1NS5A 4MCDA 4YQNA 4FMWA 4YPZA 1X7PA 3KNUA 4JAKA 1UAJA 3AIAA 4RG1A 1UAKA 4YPWA 4YQTA 3IEFA 1V2XA 4YQRA 5GMBA 2CX8A 1P9PA 4MCCA 3QUVA 3DCMX 4JALA 4YQ2A 4JWGA 4YQ9A 1ZJRA 4YQPA 4YQ0A 5GMCA 1NXZA 3E5YA 4JWHA 1VHKA 4H3YA 2QMMA 2YY8A 2V3KA 4FAKA 3KW2A 1GZ0A 4X3MA 2Z0YA 5GM8A 3N4JA 4CNEA 3BBEA 4E8BA 3N4KA 4YQGA 2I6DA 4YVHA 4H3ZA 3IC6A 4YQ3A 3OIIA 1UALA 4YQ5A 3OIJA 2QWVA 1VH0A 4YQJA 3BBDA 3KY7A 4YQ4A 4X3LA 1X7OA 4L69A 3GYQA 1V6ZA 2HA8A 1OY5A 3O7BA 4CNGA 3KTYA 3NK7A 4CNFA 4YVIA 4YVJA 4YVGA 4YPXA 5D9FA 4J3CA 3L8UA 3AI9X 1IPAA 4YQOA 1Z85A 4YQKA 4YQAA 4YVKA 1K3RA 4YQ1A 3OINA 4PZKA 1VHYA 2EGVA 5CO4A 4YQ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J85 A;  4YQ8 A;  1MXI A;  4IG6 A;  4YQS A;  2V3J A;  4YQQ A;  2O3A A;  3ONP A;  4KDZ A;  4XBO A;  3ILK A;  4YPY A;  4YQB A;  1TO0 A;  4MCB A;  2EGW A;  4YQI A;  4CND A;  4YQL A;  4YQD A;  3AXZ A;  1O6D A;  4YQ7 A;  4YQC A;  3NK6 A;  3BBH A;  5FAI A;  4KGN A;  1UAM A;  1NS5 A;  4MCD A;  4YQN A;  4YPZ A;  1X7P A;  3KNU A;  4JAK A;  1UAJ A;  3AIA A;  4RG1 A;  1UAK A;  4YPW A;  4YQT A;  3IEF A;  1V2X A;  4YQR A;  5GMB A;  2CX8 A;  1P9P A;  4MCC A;  3QUV A;  3DCM X;  4JAL A;  4YQ2 A;  4YQ9 A;  1ZJR A;  4YQP A;  4YQ0 A;  5GMC A;  1NXZ A;  3E5Y A;  1VHK A;  4H3Y A;  2QMM A;  2YY8 A;  2V3K A;  4FAK A;  3KW2 A;  1GZ0 A;  4X3M A;  2Z0Y A;  5GM8 A;  3N4J A;  4CNE A;  3BBE A;  4E8B A;  3N4K A;  4YQG A;  2I6D A;  4YVH A;  4H3Z A;  3IC6 A;  4YQ3 A;  3OII A;  1UAL A;  4YQ5 A;  3OIJ A;  2QWV A;  1VH0 A;  4YQJ A;  3BBD A;  3KY7 A;  4YQ4 A;  4X3L A;  1X7O A;  4L69 A;  3GYQ A;  1V6Z A;  2HA8 A;  1OY5 A;  3O7B A;  4CNG A;  3KTY A;  3NK7 A;  4CNF A;  4YVI A;  4YVJ A;  4YVG A;  4YPX A;  5D9F A;  4J3C A;  3L8U A;  3AI9 X;  1IPA A;  4YQO A;  1Z85 A;  4YQK A;  4YQA A;  4YVK A;  1K3R A;  4YQ1 A;  3OIN A;  4PZK A;  1VHY A;  2EGV A;  5CO4 A;  4YQ6 A; 
#chains in the Genus database with same CATH topology
 1J85 A;  4JWJ A;  4YQ8 A;  1MXI A;  4IG6 A;  4YQS A;  2V3J A;  4YQQ A;  2O3A A;  3ONP A;  4KDZ A;  4XBO A;  3ILK A;  4JWF A;  4YPY A;  4YQB A;  1TO0 A;  4MCB A;  2EGW A;  4YQI A;  4CND A;  4YQL A;  4YQD A;  3AXZ A;  1O6D A;  4YQ7 A;  4YQC A;  3NK6 A;  3BBH A;  5FAI A;  4KGN A;  1UAM A;  1NS5 A;  4MCD A;  4YQN A;  4FMW A;  4YPZ A;  1X7P A;  3KNU A;  4JAK A;  1UAJ A;  3AIA A;  4RG1 A;  1UAK A;  4YPW A;  4YQT A;  3IEF A;  1V2X A;  4YQR A;  5GMB A;  2CX8 A;  1P9P A;  4MCC A;  3QUV A;  3DCM X;  4JAL A;  4YQ2 A;  4JWG A;  4YQ9 A;  1ZJR A;  4YQP A;  4YQ0 A;  5GMC A;  1NXZ A;  3E5Y A;  4JWH A;  1VHK A;  4H3Y A;  2QMM A;  2YY8 A;  2V3K A;  4FAK A;  3KW2 A;  1GZ0 A;  4X3M A;  2Z0Y A;  5GM8 A;  3N4J A;  4CNE A;  3BBE A;  4E8B A;  3N4K A;  4YQG A;  2I6D A;  4YVH A;  4H3Z A;  3IC6 A;  4YQ3 A;  3OII A;  1UAL A;  4YQ5 A;  3OIJ A;  2QWV A;  1VH0 A;  4YQJ A;  3BBD A;  3KY7 A;  4YQ4 A;  4X3L A;  1X7O A;  4L69 A;  3GYQ A;  1V6Z A;  2HA8 A;  1OY5 A;  3O7B A;  4CNG A;  3KTY A;  3NK7 A;  4CNF A;  4YVI A;  4YVJ A;  4YVG A;  4YPX A;  5D9F A;  4J3C A;  3L8U A;  3AI9 X;  1IPA A;  4YQO A;  1Z85 A;  4YQK A;  4YQA A;  4YVK A;  1K3R A;  4YQ1 A;  3OIN A;  4PZK A;  1VHY A;  2EGV A;  5CO4 A;  4YQ6 A; 
#chains in the Genus database with same CATH homology
 1J85 A;  4JWJ A;  4YQ8 A;  1MXI A;  4IG6 A;  4YQS A;  2V3J A;  4YQQ A;  2O3A A;  3ONP A;  4KDZ A;  4XBO A;  3ILK A;  4JWF A;  4YPY A;  4YQB A;  1TO0 A;  4MCB A;  2EGW A;  4YQI A;  4CND A;  4YQL A;  4YQD A;  3AXZ A;  1O6D A;  4YQ7 A;  4YQC A;  3NK6 A;  3BBH A;  5FAI A;  4KGN A;  1UAM A;  1NS5 A;  4MCD A;  4YQN A;  4FMW A;  4YPZ A;  1X7P A;  3KNU A;  4JAK A;  1UAJ A;  3AIA A;  4RG1 A;  1UAK A;  4YPW A;  4YQT A;  3IEF A;  1V2X A;  4YQR A;  5GMB A;  2CX8 A;  1P9P A;  4MCC A;  3QUV A;  3DCM X;  4JAL A;  4YQ2 A;  4JWG A;  4YQ9 A;  1ZJR A;  4YQP A;  4YQ0 A;  5GMC A;  1NXZ A;  3E5Y A;  4JWH A;  1VHK A;  4H3Y A;  2QMM A;  2YY8 A;  2V3K A;  4FAK A;  3KW2 A;  1GZ0 A;  4X3M A;  2Z0Y A;  5GM8 A;  3N4J A;  4CNE A;  3BBE A;  4E8B A;  3N4K A;  4YQG A;  2I6D A;  4YVH A;  4H3Z A;  3IC6 A;  4YQ3 A;  3OII A;  1UAL A;  4YQ5 A;  3OIJ A;  2QWV A;  1VH0 A;  4YQJ A;  3BBD A;  3KY7 A;  4YQ4 A;  4X3L A;  1X7O A;  4L69 A;  3GYQ A;  1V6Z A;  2HA8 A;  1OY5 A;  3O7B A;  4CNG A;  3KTY A;  3NK7 A;  4CNF A;  4YVI A;  4YVJ A;  4YVG A;  4YPX A;  5D9F A;  4J3C A;  3L8U A;  3AI9 X;  1IPA A;  4YQO A;  1Z85 A;  4YQK A;  4YQA A;  4YVK A;  1K3R A;  4YQ1 A;  3OIN A;  4PZK A;  1VHY A;  2EGV A;  5CO4 A;  4YQ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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