1O6DA

Crystal structure of a hypothetical protein
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
Knots found
sequence length
147
structure length
147
Chain Sequence
LRVRIAVIGKLDGFIKEGIKHYEKFLRRFCKPEVLEIKRVHRGSIEEIVRKETEDLTNRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIVLEQIFRAFKIIHGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical UPF0247 protein TM0844
publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
source organism Thermotoga maritima
total genus 54
structure length 147
sequence length 147
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.177: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase.
pdb deposition date 2003-11-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1o6dA00
4YPWA 3N4JA 4H3YA 4JAKA 3ONPA 4XBOA 4YQQA 5GM8A 3KY7A 4YQ7A 1VH0A 5D9FA 2YY8A 4YQCA 1O6DA 4YQ5A 3E5YA 1IPAA 1P9PA 4KDZA 4H3ZA 4YQAA 4YVHA 4MCBA 1NXZA 1X7PA 3KTYA 4X3MA 1GZ0A 1OY5A 4CNEA 4YQJA 2O3AA 3OIJA 1J85A 3AXZA 5GMCA 4YQ3A 4RG1A 1UAMA 3N4KA 3IEFA 3KW2A 4YVGA 2CX8A 3QUVA 4YQDA 1V2XA 1X7OA 4L69A 4YQLA 4YVJA 4YVIA 2HA8A 4YQ0A 4PZKA 3ILKA 1NS5A 3OINA 3DCMX 3O7BA 4YQRA 4JALA 3L8UA 4YPXA 3IC6A 4CNGA 1UALA 4YQKA 4CNFA 4YQ4A 5CO4A 3NK7A 2V3JA 4YQ8A 4MCCA 3KNUA 2I6DA 3OIIA 4YQ2A 1MXIA 4YQ6A 3BBHA 1VHKA 1TO0A 3NK6A 4YVKA 4CNDA 4YQ9A 2QWVA 2V3KA 4YQTA 3AIAA 1V6ZA 5GMBA 4FAKA 4KGNA 1K3RA 1VHYA 3BBDA 3BBEA 3GYQA 4YQNA 2Z0YA 4YQIA 4YQGA 1UAKA 4YQSA 4X3LA 4YQOA 2QMMA 4IG6A 1UAJA 1ZJRA 5FAIA 3AI9X 4J3CA 4YPYA 1Z85A 2EGVA 4YPZA 4MCDA 4YQBA 4YQ1A 4E8BA 2EGWA 4YQPA
chains in the Genus database with same CATH superfamily
4YPWA 3N4JA 4H3YA 4JWJA 4JAKA 3ONPA 4JWFA 4XBOA 4YQQA 5GM8A 3KY7A 4YQ7A 1VH0A 5D9FA 2YY8A 4YQCA 1O6DA 4YQ5A 3E5YA 1IPAA 1P9PA 4KDZA 4H3ZA 4YQAA 4YVHA 4MCBA 1NXZA 1X7PA 3KTYA 4X3MA 1GZ0A 1OY5A 4CNEA 4YQJA 2O3AA 3OIJA 1J85A 3AXZA 5GMCA 4YQ3A 4RG1A 1UAMA 4FMWA 3N4KA 3IEFA 3KW2A 4YVGA 2CX8A 3QUVA 4YQDA 1V2XA 1X7OA 4L69A 4YQLA 4YVJA 4YVIA 4JWGA 2HA8A 4YQ0A 4PZKA 4JWHA 3ILKA 1NS5A 3OINA 3DCMX 3O7BA 4YQRA 4JALA 3L8UA 4YPXA 3IC6A 4CNGA 1UALA 4YQKA 4CNFA 4YQ4A 5CO4A 3NK7A 2V3JA 4YQ8A 4MCCA 3KNUA 2I6DA 3OIIA 4YQ2A 1MXIA 4YQ6A 3BBHA 1VHKA 1TO0A 3NK6A 4YVKA 4CNDA 4YQ9A 2QWVA 2V3KA 4YQTA 3AIAA 1V6ZA 5GMBA 4FAKA 4KGNA 1K3RA 1VHYA 3BBDA 3BBEA 3GYQA 4YQNA 2Z0YA 4YQIA 4YQGA 1UAKA 4YQSA 4X3LA 4YQOA 2QMMA 4IG6A 1UAJA 1ZJRA 5FAIA 3AI9X 4J3CA 4YPYA 1Z85A 2EGVA 4YPZA 4MCDA 4YQBA 4YQ1A 4E8BA 2EGWA 4YQPA
chains in the Genus database with same CATH topology
4YPWA 3N4JA 4H3YA 4JWJA 4JAKA 3ONPA 4JWFA 4XBOA 4YQQA 5GM8A 3KY7A 4YQ7A 1VH0A 5D9FA 2YY8A 4YQCA 1O6DA 4YQ5A 3E5YA 1IPAA 1P9PA 4KDZA 4H3ZA 4YQAA 4YVHA 4MCBA 1NXZA 1X7PA 3KTYA 4X3MA 1GZ0A 1OY5A 4CNEA 4YQJA 2O3AA 3OIJA 1J85A 3AXZA 5GMCA 4YQ3A 4RG1A 1UAMA 4FMWA 3N4KA 3IEFA 3KW2A 4YVGA 2CX8A 3QUVA 4YQDA 1V2XA 1X7OA 4L69A 4YQLA 4YVJA 4YVIA 4JWGA 2HA8A 4YQ0A 4PZKA 4JWHA 3ILKA 1NS5A 3OINA 3DCMX 3O7BA 4YQRA 4JALA 3L8UA 4YPXA 3IC6A 4CNGA 1UALA 4YQKA 4CNFA 4YQ4A 5CO4A 3NK7A 2V3JA 4YQ8A 4MCCA 3KNUA 2I6DA 3OIIA 4YQ2A 1MXIA 4YQ6A 3BBHA 1VHKA 1TO0A 3NK6A 4YVKA 4CNDA 4YQ9A 2QWVA 2V3KA 4YQTA 3AIAA 1V6ZA 5GMBA 4FAKA 4KGNA 1K3RA 1VHYA 3BBDA 3BBEA 3GYQA 4YQNA 2Z0YA 4YQIA 4YQGA 1UAKA 4YQSA 4X3LA 4YQOA 2QMMA 4IG6A 1UAJA 1ZJRA 5FAIA 3AI9X 4J3CA 4YPYA 1Z85A 2EGVA 4YPZA 4MCDA 4YQBA 4YQ1A 4E8BA 2EGWA 4YQPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YPW A;  3N4J A;  4H3Y A;  4JAK A;  3ONP A;  4XBO A;  4YQQ A;  5GM8 A;  3KY7 A;  4YQ7 A;  1VH0 A;  5D9F A;  2YY8 A;  4YQC A;  1O6D A;  4YQ5 A;  3E5Y A;  1IPA A;  1P9P A;  4KDZ A;  4H3Z A;  4YQA A;  4YVH A;  4MCB A;  1NXZ A;  1X7P A;  3KTY A;  4X3M A;  1GZ0 A;  1OY5 A;  4CNE A;  4YQJ A;  2O3A A;  3OIJ A;  1J85 A;  3AXZ A;  5GMC A;  4YQ3 A;  4RG1 A;  1UAM A;  3N4K A;  3IEF A;  3KW2 A;  4YVG A;  2CX8 A;  3QUV A;  4YQD A;  1V2X A;  1X7O A;  4L69 A;  4YQL A;  4YVJ A;  4YVI A;  2HA8 A;  4YQ0 A;  4PZK A;  3ILK A;  1NS5 A;  3OIN A;  3DCM X;  3O7B A;  4YQR A;  4JAL A;  3L8U A;  4YPX A;  3IC6 A;  4CNG A;  1UAL A;  4YQK A;  4CNF A;  4YQ4 A;  5CO4 A;  3NK7 A;  2V3J A;  4YQ8 A;  4MCC A;  3KNU A;  2I6D A;  3OII A;  4YQ2 A;  1MXI A;  4YQ6 A;  3BBH A;  1VHK A;  1TO0 A;  3NK6 A;  4YVK A;  4CND A;  4YQ9 A;  2QWV A;  2V3K A;  4YQT A;  3AIA A;  1V6Z A;  5GMB A;  4FAK A;  4KGN A;  1K3R A;  1VHY A;  3BBD A;  3BBE A;  3GYQ A;  4YQN A;  2Z0Y A;  4YQI A;  4YQG A;  1UAK A;  4YQS A;  4X3L A;  4YQO A;  2QMM A;  4IG6 A;  1UAJ A;  1ZJR A;  5FAI A;  3AI9 X;  4J3C A;  4YPY A;  1Z85 A;  2EGV A;  4YPZ A;  4MCD A;  4YQB A;  4YQ1 A;  4E8B A;  2EGW A;  4YQP A; 
#chains in the Genus database with same CATH topology
 4YPW A;  3N4J A;  4H3Y A;  4JWJ A;  4JAK A;  3ONP A;  4JWF A;  4XBO A;  4YQQ A;  5GM8 A;  3KY7 A;  4YQ7 A;  1VH0 A;  5D9F A;  2YY8 A;  4YQC A;  1O6D A;  4YQ5 A;  3E5Y A;  1IPA A;  1P9P A;  4KDZ A;  4H3Z A;  4YQA A;  4YVH A;  4MCB A;  1NXZ A;  1X7P A;  3KTY A;  4X3M A;  1GZ0 A;  1OY5 A;  4CNE A;  4YQJ A;  2O3A A;  3OIJ A;  1J85 A;  3AXZ A;  5GMC A;  4YQ3 A;  4RG1 A;  1UAM A;  4FMW A;  3N4K A;  3IEF A;  3KW2 A;  4YVG A;  2CX8 A;  3QUV A;  4YQD A;  1V2X A;  1X7O A;  4L69 A;  4YQL A;  4YVJ A;  4YVI A;  4JWG A;  2HA8 A;  4YQ0 A;  4PZK A;  4JWH A;  3ILK A;  1NS5 A;  3OIN A;  3DCM X;  3O7B A;  4YQR A;  4JAL A;  3L8U A;  4YPX A;  3IC6 A;  4CNG A;  1UAL A;  4YQK A;  4CNF A;  4YQ4 A;  5CO4 A;  3NK7 A;  2V3J A;  4YQ8 A;  4MCC A;  3KNU A;  2I6D A;  3OII A;  4YQ2 A;  1MXI A;  4YQ6 A;  3BBH A;  1VHK A;  1TO0 A;  3NK6 A;  4YVK A;  4CND A;  4YQ9 A;  2QWV A;  2V3K A;  4YQT A;  3AIA A;  1V6Z A;  5GMB A;  4FAK A;  4KGN A;  1K3R A;  1VHY A;  3BBD A;  3BBE A;  3GYQ A;  4YQN A;  2Z0Y A;  4YQI A;  4YQG A;  1UAK A;  4YQS A;  4X3L A;  4YQO A;  2QMM A;  4IG6 A;  1UAJ A;  1ZJR A;  5FAI A;  3AI9 X;  4J3C A;  4YPY A;  1Z85 A;  2EGV A;  4YPZ A;  4MCD A;  4YQB A;  4YQ1 A;  4E8B A;  2EGW A;  4YQP A; 
#chains in the Genus database with same CATH homology
 4YPW A;  3N4J A;  4H3Y A;  4JWJ A;  4JAK A;  3ONP A;  4JWF A;  4XBO A;  4YQQ A;  5GM8 A;  3KY7 A;  4YQ7 A;  1VH0 A;  5D9F A;  2YY8 A;  4YQC A;  1O6D A;  4YQ5 A;  3E5Y A;  1IPA A;  1P9P A;  4KDZ A;  4H3Z A;  4YQA A;  4YVH A;  4MCB A;  1NXZ A;  1X7P A;  3KTY A;  4X3M A;  1GZ0 A;  1OY5 A;  4CNE A;  4YQJ A;  2O3A A;  3OIJ A;  1J85 A;  3AXZ A;  5GMC A;  4YQ3 A;  4RG1 A;  1UAM A;  4FMW A;  3N4K A;  3IEF A;  3KW2 A;  4YVG A;  2CX8 A;  3QUV A;  4YQD A;  1V2X A;  1X7O A;  4L69 A;  4YQL A;  4YVJ A;  4YVI A;  4JWG A;  2HA8 A;  4YQ0 A;  4PZK A;  4JWH A;  3ILK A;  1NS5 A;  3OIN A;  3DCM X;  3O7B A;  4YQR A;  4JAL A;  3L8U A;  4YPX A;  3IC6 A;  4CNG A;  1UAL A;  4YQK A;  4CNF A;  4YQ4 A;  5CO4 A;  3NK7 A;  2V3J A;  4YQ8 A;  4MCC A;  3KNU A;  2I6D A;  3OII A;  4YQ2 A;  1MXI A;  4YQ6 A;  3BBH A;  1VHK A;  1TO0 A;  3NK6 A;  4YVK A;  4CND A;  4YQ9 A;  2QWV A;  2V3K A;  4YQT A;  3AIA A;  1V6Z A;  5GMB A;  4FAK A;  4KGN A;  1K3R A;  1VHY A;  3BBD A;  3BBE A;  3GYQ A;  4YQN A;  2Z0Y A;  4YQI A;  4YQG A;  1UAK A;  4YQS A;  4X3L A;  4YQO A;  2QMM A;  4IG6 A;  1UAJ A;  1ZJR A;  5FAI A;  3AI9 X;  4J3C A;  4YPY A;  1Z85 A;  2EGV A;  4YPZ A;  4MCD A;  4YQB A;  4YQ1 A;  4E8B A;  2EGW A;  4YQP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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