1O6DA

Crystal structure of a hypothetical protein
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
Knots found
sequence length
147
structure length
147
Chain Sequence
LRVRIAVIGKLDGFIKEGIKHYEKFLRRFCKPEVLEIKRVHRGSIEEIVRKETEDLTNRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIVLEQIFRAFKIIHGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hypothetical UPF0247 protein TM0844
publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
source organism Thermotoga maritima
molecule tags Structural genomics, unknown function
total genus 54
structure length 147
sequence length 147
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.177: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase.
pdb deposition date 2003-11-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1o6dA00
2CX8A 2EGWA 4X3LA 4YPXA 4L69A 1VHKA 4RG1A 1VHYA 3BBHA 4X3MA 4YVIA 4YQDA 5FAIA 2QWVA 4YQQA 1X7OA 1IPAA 1UAKA 4YVGA 4PZKA 5D9FA 1O6DA 3OIJA 3ONPA 1OY5A 3O7BA 4YQTA 4MCBA 2YY8A 3KTYA 3DCMX 2EGVA 4YQ9A 1GZ0A 3NK6A 3IC6A 4YQPA 1UAJA 4YQGA 4YQIA 4YQBA 1NXZA 4YQ3A 1ZJRA 4YQ4A 2O3AA 3KY7A 4MCCA 4H3ZA 3IEFA 4YPZA 4J3CA 1X7PA 3BBDA 3L8UA 3OINA 3AXZA 1V6ZA 3OIIA 3AIAA 3ILKA 3N4KA 4JALA 3GYQA 3NK7A 4YQCA 1NS5A 1J85A 2QMMA 1Z85A 3E5YA 5GM8A 3AI9X 1VH0A 4YQLA 4YQSA 3KNUA 2V3JA 1K3RA 4YPWA 2V3KA 4YVKA 3N4JA 4YQ1A 4CNGA 4E8BA 4XBOA 4YQOA 4YQKA 1TO0A 4KGNA 2Z0YA 4YQ7A 4IG6A 4JAKA 2HA8A 5GMBA 1MXIA 4H3YA 4YQRA 5GMCA 4KDZA 4CNDA 4YQ8A 1V2XA 4YQ6A 4YVJA 3KW2A 1P9PA 5CO4A 4YPYA 4FAKA 4YQ0A 4YQ5A 3QUVA 4YQJA 4YQNA 4YQ2A 4MCDA 4CNFA 4YVHA 1UAMA 4CNEA 4YQAA 1UALA 2I6DA 3BBEA
chains in the Genus database with same CATH superfamily
2CX8A 2EGWA 4X3LA 4YPXA 4L69A 1VHKA 4RG1A 1VHYA 3BBHA 4X3MA 4YVIA 4YQDA 5FAIA 2QWVA 4YQQA 1X7OA 1IPAA 1UAKA 4YVGA 4PZKA 5D9FA 1O6DA 3OIJA 3ONPA 1OY5A 3O7BA 4YQTA 4MCBA 4JWGA 2YY8A 3KTYA 3DCMX 2EGVA 4YQ9A 1GZ0A 3NK6A 3IC6A 4YQPA 1UAJA 4YQGA 4YQIA 4YQBA 1NXZA 4YQ3A 1ZJRA 4YQ4A 2O3AA 3KY7A 4JWFA 4MCCA 4H3ZA 3IEFA 4YPZA 4JWJA 4J3CA 1X7PA 3BBDA 3L8UA 3OINA 3AXZA 1V6ZA 3OIIA 3AIAA 3ILKA 3N4KA 4JALA 3GYQA 3NK7A 4YQCA 1NS5A 1J85A 2QMMA 1Z85A 3E5YA 5GM8A 3AI9X 1VH0A 4YQLA 4YQSA 3KNUA 2V3JA 1K3RA 4YPWA 2V3KA 4YVKA 3N4JA 4YQ1A 4CNGA 4E8BA 4XBOA 4YQOA 4YQKA 1TO0A 4KGNA 2Z0YA 4JWHA 4IG6A 4JAKA 4YQ7A 2HA8A 5GMBA 1MXIA 4H3YA 4YQRA 5GMCA 4KDZA 4CNDA 4YQ8A 1V2XA 4YQ6A 4YVJA 3KW2A 1P9PA 5CO4A 4YPYA 4FAKA 4YQ0A 4YQ5A 3QUVA 4YQJA 4YQNA 4YQ2A 4MCDA 4CNFA 4YVHA 1UAMA 4CNEA 4YQAA 1UALA 2I6DA 3BBEA 4FMWA
chains in the Genus database with same CATH topology
2CX8A 2EGWA 4X3LA 4YPXA 4L69A 1VHKA 4RG1A 1VHYA 3BBHA 4X3MA 4YVIA 4YQDA 5FAIA 2QWVA 4YQQA 1X7OA 1IPAA 1UAKA 4YVGA 4PZKA 5D9FA 1O6DA 3OIJA 3ONPA 1OY5A 3O7BA 4YQTA 4MCBA 4JWGA 2YY8A 3KTYA 3DCMX 2EGVA 4YQ9A 1GZ0A 3NK6A 3IC6A 4YQPA 1UAJA 4YQGA 4YQIA 4YQBA 1NXZA 4YQ3A 1ZJRA 4YQ4A 2O3AA 3KY7A 4JWFA 4MCCA 4H3ZA 3IEFA 4YPZA 4JWJA 4J3CA 1X7PA 3BBDA 3L8UA 3OINA 3AXZA 1V6ZA 3OIIA 3AIAA 3ILKA 3N4KA 4JALA 3GYQA 3NK7A 4YQCA 1NS5A 1J85A 2QMMA 1Z85A 3E5YA 5GM8A 3AI9X 1VH0A 4YQLA 4YQSA 3KNUA 2V3JA 1K3RA 4YPWA 2V3KA 4YVKA 3N4JA 4YQ1A 4CNGA 4E8BA 4XBOA 4YQOA 4YQKA 1TO0A 4KGNA 2Z0YA 4JWHA 4IG6A 4JAKA 4YQ7A 2HA8A 5GMBA 1MXIA 4H3YA 4YQRA 5GMCA 4KDZA 4CNDA 4YQ8A 1V2XA 4YQ6A 4YVJA 3KW2A 1P9PA 5CO4A 4YPYA 4FAKA 4YQ0A 4YQ5A 3QUVA 4YQJA 4YQNA 4YQ2A 4MCDA 4CNFA 4YVHA 1UAMA 4CNEA 4YQAA 1UALA 2I6DA 3BBEA 4FMWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CX8 A;  2EGW A;  4X3L A;  4YPX A;  4L69 A;  1VHK A;  4RG1 A;  1VHY A;  3BBH A;  4X3M A;  4YVI A;  4YQD A;  5FAI A;  2QWV A;  4YQQ A;  1X7O A;  1IPA A;  1UAK A;  4YVG A;  4PZK A;  5D9F A;  1O6D A;  3OIJ A;  3ONP A;  1OY5 A;  3O7B A;  4YQT A;  4MCB A;  2YY8 A;  3KTY A;  3DCM X;  2EGV A;  4YQ9 A;  1GZ0 A;  3NK6 A;  3IC6 A;  4YQP A;  1UAJ A;  4YQG A;  4YQI A;  4YQB A;  1NXZ A;  4YQ3 A;  1ZJR A;  4YQ4 A;  2O3A A;  3KY7 A;  4MCC A;  4H3Z A;  3IEF A;  4YPZ A;  4J3C A;  1X7P A;  3BBD A;  3L8U A;  3OIN A;  3AXZ A;  1V6Z A;  3OII A;  3AIA A;  3ILK A;  3N4K A;  4JAL A;  3GYQ A;  3NK7 A;  4YQC A;  1NS5 A;  1J85 A;  2QMM A;  1Z85 A;  3E5Y A;  5GM8 A;  3AI9 X;  1VH0 A;  4YQL A;  4YQS A;  3KNU A;  2V3J A;  1K3R A;  4YPW A;  2V3K A;  4YVK A;  3N4J A;  4YQ1 A;  4CNG A;  4E8B A;  4XBO A;  4YQO A;  4YQK A;  1TO0 A;  4KGN A;  2Z0Y A;  4YQ7 A;  4IG6 A;  4JAK A;  2HA8 A;  5GMB A;  1MXI A;  4H3Y A;  4YQR A;  5GMC A;  4KDZ A;  4CND A;  4YQ8 A;  1V2X A;  4YQ6 A;  4YVJ A;  3KW2 A;  1P9P A;  5CO4 A;  4YPY A;  4FAK A;  4YQ0 A;  4YQ5 A;  3QUV A;  4YQJ A;  4YQN A;  4YQ2 A;  4MCD A;  4CNF A;  4YVH A;  1UAM A;  4CNE A;  4YQA A;  1UAL A;  2I6D A;  3BBE A; 
#chains in the Genus database with same CATH topology
 2CX8 A;  2EGW A;  4X3L A;  4YPX A;  4L69 A;  1VHK A;  4RG1 A;  1VHY A;  3BBH A;  4X3M A;  4YVI A;  4YQD A;  5FAI A;  2QWV A;  4YQQ A;  1X7O A;  1IPA A;  1UAK A;  4YVG A;  4PZK A;  5D9F A;  1O6D A;  3OIJ A;  3ONP A;  1OY5 A;  3O7B A;  4YQT A;  4MCB A;  4JWG A;  2YY8 A;  3KTY A;  3DCM X;  2EGV A;  4YQ9 A;  1GZ0 A;  3NK6 A;  3IC6 A;  4YQP A;  1UAJ A;  4YQG A;  4YQI A;  4YQB A;  1NXZ A;  4YQ3 A;  1ZJR A;  4YQ4 A;  2O3A A;  3KY7 A;  4JWF A;  4MCC A;  4H3Z A;  3IEF A;  4YPZ A;  4JWJ A;  4J3C A;  1X7P A;  3BBD A;  3L8U A;  3OIN A;  3AXZ A;  1V6Z A;  3OII A;  3AIA A;  3ILK A;  3N4K A;  4JAL A;  3GYQ A;  3NK7 A;  4YQC A;  1NS5 A;  1J85 A;  2QMM A;  1Z85 A;  3E5Y A;  5GM8 A;  3AI9 X;  1VH0 A;  4YQL A;  4YQS A;  3KNU A;  2V3J A;  1K3R A;  4YPW A;  2V3K A;  4YVK A;  3N4J A;  4YQ1 A;  4CNG A;  4E8B A;  4XBO A;  4YQO A;  4YQK A;  1TO0 A;  4KGN A;  2Z0Y A;  4JWH A;  4IG6 A;  4JAK A;  4YQ7 A;  2HA8 A;  5GMB A;  1MXI A;  4H3Y A;  4YQR A;  5GMC A;  4KDZ A;  4CND A;  4YQ8 A;  1V2X A;  4YQ6 A;  4YVJ A;  3KW2 A;  1P9P A;  5CO4 A;  4YPY A;  4FAK A;  4YQ0 A;  4YQ5 A;  3QUV A;  4YQJ A;  4YQN A;  4YQ2 A;  4MCD A;  4CNF A;  4YVH A;  1UAM A;  4CNE A;  4YQA A;  1UAL A;  2I6D A;  3BBE A;  4FMW A; 
#chains in the Genus database with same CATH homology
 2CX8 A;  2EGW A;  4X3L A;  4YPX A;  4L69 A;  1VHK A;  4RG1 A;  1VHY A;  3BBH A;  4X3M A;  4YVI A;  4YQD A;  5FAI A;  2QWV A;  4YQQ A;  1X7O A;  1IPA A;  1UAK A;  4YVG A;  4PZK A;  5D9F A;  1O6D A;  3OIJ A;  3ONP A;  1OY5 A;  3O7B A;  4YQT A;  4MCB A;  4JWG A;  2YY8 A;  3KTY A;  3DCM X;  2EGV A;  4YQ9 A;  1GZ0 A;  3NK6 A;  3IC6 A;  4YQP A;  1UAJ A;  4YQG A;  4YQI A;  4YQB A;  1NXZ A;  4YQ3 A;  1ZJR A;  4YQ4 A;  2O3A A;  3KY7 A;  4JWF A;  4MCC A;  4H3Z A;  3IEF A;  4YPZ A;  4JWJ A;  4J3C A;  1X7P A;  3BBD A;  3L8U A;  3OIN A;  3AXZ A;  1V6Z A;  3OII A;  3AIA A;  3ILK A;  3N4K A;  4JAL A;  3GYQ A;  3NK7 A;  4YQC A;  1NS5 A;  1J85 A;  2QMM A;  1Z85 A;  3E5Y A;  5GM8 A;  3AI9 X;  1VH0 A;  4YQL A;  4YQS A;  3KNU A;  2V3J A;  1K3R A;  4YPW A;  2V3K A;  4YVK A;  3N4J A;  4YQ1 A;  4CNG A;  4E8B A;  4XBO A;  4YQO A;  4YQK A;  1TO0 A;  4KGN A;  2Z0Y A;  4JWH A;  4IG6 A;  4JAK A;  4YQ7 A;  2HA8 A;  5GMB A;  1MXI A;  4H3Y A;  4YQR A;  5GMC A;  4KDZ A;  4CND A;  4YQ8 A;  1V2X A;  4YQ6 A;  4YVJ A;  3KW2 A;  1P9P A;  5CO4 A;  4YPY A;  4FAK A;  4YQ0 A;  4YQ5 A;  3QUV A;  4YQJ A;  4YQN A;  4YQ2 A;  4MCD A;  4CNF A;  4YVH A;  1UAM A;  4CNE A;  4YQA A;  1UAL A;  2I6D A;  3BBE A;  4FMW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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