2V3KA

The yeast ribosome synthesis factor emg1 alpha beta knot fold methyltransferase
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
Knots found
sequence length
227
structure length
218
Chain Sequence
PQAPPVLTSKDKITKRMIVVLAMASLETHKIYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosomal protein
source organism Saccharomyces cerevisiae
publication title The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
pubmed doi rcsb
molecule keywords ESSENTIAL FOR MITOTIC GROWTH 1
total genus 58
structure length 218
sequence length 227
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1.
pdb deposition date 2007-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2v3kA01
3O7BA 4MCBA 2HA8A 4YQOA 3KTYA 5GMBA 4YPYA 3KY7A 4RG1A 4XBOA 4YQ8A 1ZJRA 1J85A 4MCCA 1P9PA 3BBEA 4YQ3A 3OIJA 4X3MA 3DCMX 3IEFA 4YPWA 4CNFA 3KNUA 4L69A 4JALA 4YQBA 1UAKA 1X7OA 1TO0A 5CO4A 4H3YA 4CNGA 3KW2A 4YQQA 2EGWA 4YQSA 4YQ6A 4YQIA 4YQ1A 3BBDA 2O3AA 2QWVA 3N4JA 1UAJA 4IG6A 2V3KA 4J3CA 4YQTA 1VHYA 4E8BA 3AXZA 3IC6A 4YQ5A 4YQDA 4YQ7A 3E5YA 3L8UA 4YQNA 4X3LA 4JAKA 1NXZA 2Z0YA 2I6DA 3ONPA 3N4KA 4YQJA 4MCDA 3BBHA 3NK7A 4YQ0A 1VHKA 4YQRA 3NK6A 3OINA 1GZ0A 5FAIA 4YVIA 4KGNA 1VH0A 1Z85A 2V3JA 4CNDA 2CX8A 4YVKA 1X7PA 2YY8A 4YPXA 4YVJA 5GM8A 1NS5A 4YQGA 4YQPA 1OY5A 4KDZA 2QMMA 4FAKA 3GYQA 4YQ4A 4YQKA 1UALA 3AI9X 4YQLA 1MXIA 4YQAA 4PZKA 5D9FA 3OIIA 1IPAA 4YPZA 3ILKA 4YVGA 4CNEA 1UAMA 4YQCA 4YQ9A 1O6DA 2EGVA 1K3RA 5GMCA 4YQ2A 3AIAA 4YVHA 1V2XA 4H3ZA 3QUVA 1V6ZA
chains in the Genus database with same CATH superfamily
3O7BA 4MCBA 2HA8A 4JWJA 4YQOA 3KTYA 5GMBA 4YPYA 3KY7A 4RG1A 4XBOA 4YQ8A 1ZJRA 1J85A 4MCCA 1P9PA 3BBEA 4YQ3A 3OIJA 4X3MA 3DCMX 3IEFA 4YPWA 4CNFA 3KNUA 4L69A 4JALA 4YQBA 1UAKA 4JWGA 1X7OA 1TO0A 5CO4A 4H3YA 4CNGA 3KW2A 4YQQA 4JWHA 2EGWA 4YQSA 4YQ6A 4YQIA 4YQ1A 3BBDA 2O3AA 2QWVA 3N4JA 1UAJA 4IG6A 2V3KA 4J3CA 4YQTA 1VHYA 4E8BA 3AXZA 3IC6A 4YQ5A 4YQDA 4YQ7A 3E5YA 3L8UA 4YQNA 4X3LA 4JAKA 1NXZA 2Z0YA 2I6DA 3ONPA 3N4KA 4YQJA 4MCDA 3BBHA 3NK7A 4YQ0A 1VHKA 4YQRA 3NK6A 3OINA 1GZ0A 5FAIA 4YVIA 4JWFA 4KGNA 1VH0A 1Z85A 2V3JA 4CNDA 2CX8A 4YVKA 1X7PA 2YY8A 4YPXA 4YVJA 5GM8A 1NS5A 4YQGA 4YQPA 1OY5A 4KDZA 2QMMA 4FAKA 3GYQA 4YQ4A 4YQKA 1UALA 3AI9X 4YQLA 1MXIA 4YQAA 4PZKA 5D9FA 3OIIA 1IPAA 4YPZA 3ILKA 4YVGA 4CNEA 1UAMA 4YQCA 4YQ9A 1O6DA 2EGVA 1K3RA 5GMCA 4YQ2A 3AIAA 4YVHA 4FMWA 1V2XA 4H3ZA 3QUVA 1V6ZA
chains in the Genus database with same CATH topology
3O7BA 4MCBA 2HA8A 4JWJA 4YQOA 3KTYA 5GMBA 4YPYA 3KY7A 4RG1A 4XBOA 4YQ8A 1ZJRA 1J85A 4MCCA 1P9PA 3BBEA 4YQ3A 3OIJA 4X3MA 3DCMX 3IEFA 4YPWA 4CNFA 3KNUA 4L69A 4JALA 4YQBA 1UAKA 4JWGA 1X7OA 1TO0A 5CO4A 4H3YA 4CNGA 3KW2A 4YQQA 4JWHA 2EGWA 4YQSA 4YQ6A 4YQIA 4YQ1A 3BBDA 2O3AA 2QWVA 3N4JA 1UAJA 4IG6A 2V3KA 4J3CA 4YQTA 1VHYA 4E8BA 3AXZA 3IC6A 4YQ5A 4YQDA 4YQ7A 3E5YA 3L8UA 4YQNA 4X3LA 4JAKA 1NXZA 2Z0YA 2I6DA 3ONPA 3N4KA 4YQJA 4MCDA 3BBHA 3NK7A 4YQ0A 1VHKA 4YQRA 3NK6A 3OINA 1GZ0A 5FAIA 4YVIA 4JWFA 4KGNA 1VH0A 1Z85A 2V3JA 4CNDA 2CX8A 4YVKA 1X7PA 2YY8A 4YPXA 4YVJA 5GM8A 1NS5A 4YQGA 4YQPA 1OY5A 4KDZA 2QMMA 4FAKA 3GYQA 4YQ4A 4YQKA 1UALA 3AI9X 4YQLA 1MXIA 4YQAA 4PZKA 5D9FA 3OIIA 1IPAA 4YPZA 3ILKA 4YVGA 4CNEA 1UAMA 4YQCA 4YQ9A 1O6DA 2EGVA 1K3RA 5GMCA 4YQ2A 3AIAA 4YVHA 4FMWA 1V2XA 4H3ZA 3QUVA 1V6ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O7B A;  4MCB A;  2HA8 A;  4YQO A;  3KTY A;  5GMB A;  4YPY A;  3KY7 A;  4RG1 A;  4XBO A;  4YQ8 A;  1ZJR A;  1J85 A;  4MCC A;  1P9P A;  3BBE A;  4YQ3 A;  3OIJ A;  4X3M A;  3DCM X;  3IEF A;  4YPW A;  4CNF A;  3KNU A;  4L69 A;  4JAL A;  4YQB A;  1UAK A;  1X7O A;  1TO0 A;  5CO4 A;  4H3Y A;  4CNG A;  3KW2 A;  4YQQ A;  2EGW A;  4YQS A;  4YQ6 A;  4YQI A;  4YQ1 A;  3BBD A;  2O3A A;  2QWV A;  3N4J A;  1UAJ A;  4IG6 A;  2V3K A;  4J3C A;  4YQT A;  1VHY A;  4E8B A;  3AXZ A;  3IC6 A;  4YQ5 A;  4YQD A;  4YQ7 A;  3E5Y A;  3L8U A;  4YQN A;  4X3L A;  4JAK A;  1NXZ A;  2Z0Y A;  2I6D A;  3ONP A;  3N4K A;  4YQJ A;  4MCD A;  3BBH A;  3NK7 A;  4YQ0 A;  1VHK A;  4YQR A;  3NK6 A;  3OIN A;  1GZ0 A;  5FAI A;  4YVI A;  4KGN A;  1VH0 A;  1Z85 A;  2V3J A;  4CND A;  2CX8 A;  4YVK A;  1X7P A;  2YY8 A;  4YPX A;  4YVJ A;  5GM8 A;  1NS5 A;  4YQG A;  4YQP A;  1OY5 A;  4KDZ A;  2QMM A;  4FAK A;  3GYQ A;  4YQ4 A;  4YQK A;  1UAL A;  3AI9 X;  4YQL A;  1MXI A;  4YQA A;  4PZK A;  5D9F A;  3OII A;  1IPA A;  4YPZ A;  3ILK A;  4YVG A;  4CNE A;  1UAM A;  4YQC A;  4YQ9 A;  1O6D A;  2EGV A;  1K3R A;  5GMC A;  4YQ2 A;  3AIA A;  4YVH A;  1V2X A;  4H3Z A;  3QUV A;  1V6Z A; 
#chains in the Genus database with same CATH topology
 3O7B A;  4MCB A;  2HA8 A;  4JWJ A;  4YQO A;  3KTY A;  5GMB A;  4YPY A;  3KY7 A;  4RG1 A;  4XBO A;  4YQ8 A;  1ZJR A;  1J85 A;  4MCC A;  1P9P A;  3BBE A;  4YQ3 A;  3OIJ A;  4X3M A;  3DCM X;  3IEF A;  4YPW A;  4CNF A;  3KNU A;  4L69 A;  4JAL A;  4YQB A;  1UAK A;  4JWG A;  1X7O A;  1TO0 A;  5CO4 A;  4H3Y A;  4CNG A;  3KW2 A;  4YQQ A;  4JWH A;  2EGW A;  4YQS A;  4YQ6 A;  4YQI A;  4YQ1 A;  3BBD A;  2O3A A;  2QWV A;  3N4J A;  1UAJ A;  4IG6 A;  2V3K A;  4J3C A;  4YQT A;  1VHY A;  4E8B A;  3AXZ A;  3IC6 A;  4YQ5 A;  4YQD A;  4YQ7 A;  3E5Y A;  3L8U A;  4YQN A;  4X3L A;  4JAK A;  1NXZ A;  2Z0Y A;  2I6D A;  3ONP A;  3N4K A;  4YQJ A;  4MCD A;  3BBH A;  3NK7 A;  4YQ0 A;  1VHK A;  4YQR A;  3NK6 A;  3OIN A;  1GZ0 A;  5FAI A;  4YVI A;  4JWF A;  4KGN A;  1VH0 A;  1Z85 A;  2V3J A;  4CND A;  2CX8 A;  4YVK A;  1X7P A;  2YY8 A;  4YPX A;  4YVJ A;  5GM8 A;  1NS5 A;  4YQG A;  4YQP A;  1OY5 A;  4KDZ A;  2QMM A;  4FAK A;  3GYQ A;  4YQ4 A;  4YQK A;  1UAL A;  3AI9 X;  4YQL A;  1MXI A;  4YQA A;  4PZK A;  5D9F A;  3OII A;  1IPA A;  4YPZ A;  3ILK A;  4YVG A;  4CNE A;  1UAM A;  4YQC A;  4YQ9 A;  1O6D A;  2EGV A;  1K3R A;  5GMC A;  4YQ2 A;  3AIA A;  4YVH A;  4FMW A;  1V2X A;  4H3Z A;  3QUV A;  1V6Z A; 
#chains in the Genus database with same CATH homology
 3O7B A;  4MCB A;  2HA8 A;  4JWJ A;  4YQO A;  3KTY A;  5GMB A;  4YPY A;  3KY7 A;  4RG1 A;  4XBO A;  4YQ8 A;  1ZJR A;  1J85 A;  4MCC A;  1P9P A;  3BBE A;  4YQ3 A;  3OIJ A;  4X3M A;  3DCM X;  3IEF A;  4YPW A;  4CNF A;  3KNU A;  4L69 A;  4JAL A;  4YQB A;  1UAK A;  4JWG A;  1X7O A;  1TO0 A;  5CO4 A;  4H3Y A;  4CNG A;  3KW2 A;  4YQQ A;  4JWH A;  2EGW A;  4YQS A;  4YQ6 A;  4YQI A;  4YQ1 A;  3BBD A;  2O3A A;  2QWV A;  3N4J A;  1UAJ A;  4IG6 A;  2V3K A;  4J3C A;  4YQT A;  1VHY A;  4E8B A;  3AXZ A;  3IC6 A;  4YQ5 A;  4YQD A;  4YQ7 A;  3E5Y A;  3L8U A;  4YQN A;  4X3L A;  4JAK A;  1NXZ A;  2Z0Y A;  2I6D A;  3ONP A;  3N4K A;  4YQJ A;  4MCD A;  3BBH A;  3NK7 A;  4YQ0 A;  1VHK A;  4YQR A;  3NK6 A;  3OIN A;  1GZ0 A;  5FAI A;  4YVI A;  4JWF A;  4KGN A;  1VH0 A;  1Z85 A;  2V3J A;  4CND A;  2CX8 A;  4YVK A;  1X7P A;  2YY8 A;  4YPX A;  4YVJ A;  5GM8 A;  1NS5 A;  4YQG A;  4YQP A;  1OY5 A;  4KDZ A;  2QMM A;  4FAK A;  3GYQ A;  4YQ4 A;  4YQK A;  1UAL A;  3AI9 X;  4YQL A;  1MXI A;  4YQA A;  4PZK A;  5D9F A;  3OII A;  1IPA A;  4YPZ A;  3ILK A;  4YVG A;  4CNE A;  1UAM A;  4YQC A;  4YQ9 A;  1O6D A;  2EGV A;  1K3R A;  5GMC A;  4YQ2 A;  3AIA A;  4YVH A;  4FMW A;  1V2X A;  4H3Z A;  3QUV A;  1V6Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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