2V3KA

The yeast ribosome synthesis factor emg1 alpha beta knot fold methyltransferase
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
Knots found
sequence length
227
structure length
218
Chain Sequence
PQAPPVLTSKDKITKRMIVVLAMASLETHKIYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ESSENTIAL FOR MITOTIC GROWTH 1
publication title The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ribosomal protein
total genus 58
structure length 218
sequence length 227
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1.
pdb deposition date 2007-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2v3kA01
2V3JA 3IEFA 3KTYA 4PZKA 1Z85A 4IG6A 4YQCA 4YVIA 4MCBA 1UAMA 4YPZA 4YQ9A 4X3LA 3OIJA 4KGNA 4CNFA 4JAKA 3E5YA 4YPWA 2Z0YA 1O6DA 3L8UA 4YQ8A 4YVKA 1X7PA 4YQDA 3KNUA 1J85A 1V6ZA 3AI9X 4YVHA 1K3RA 3DCMX 3OINA 1ZJRA 2I6DA 3BBDA 1GZ0A 2CX8A 3N4JA 4CNDA 4YPYA 1UALA 4YQ4A 3NK7A 4YVGA 3O7BA 3KW2A 1IPAA 4YQIA 3QUVA 4YPXA 3OIIA 4YQ0A 3GYQA 4YQQA 1P9PA 1VHYA 5GMCA 5FAIA 3KY7A 4YQTA 2QWVA 4CNEA 3IC6A 1NS5A 4YQSA 2HA8A 4YQPA 1V2XA 3ONPA 5GMBA 4RG1A 1UAKA 4YQ5A 4J3CA 3BBEA 3ILKA 5D9FA 4H3ZA 4YQOA 3NK6A 4YQ3A 2QMMA 1VHKA 1TO0A 1MXIA 4YQ6A 4XBOA 4KDZA 4YQRA 4E8BA 2YY8A 4FAKA 4YQ1A 4YQKA 4L69A 2EGVA 4CNGA 1OY5A 2O3AA 4MCCA 4YQBA 2EGWA 4H3YA 4YQGA 4YQNA 5GM8A 4YQLA 4MCDA 4YQ2A 4YQJA 4YQ7A 4YQAA 4JALA 3N4KA 3AIAA 4YVJA 1VH0A 4X3MA 3BBHA 2V3KA 3AXZA 1NXZA 1UAJA 1X7OA 5CO4A
chains in the Genus database with same CATH superfamily
2V3JA 3IEFA 3KTYA 4PZKA 1Z85A 4IG6A 4YQCA 4YVIA 4MCBA 1UAMA 4YPZA 4YQ9A 4X3LA 3OIJA 4KGNA 4CNFA 4JAKA 3E5YA 4YPWA 2Z0YA 1O6DA 3L8UA 4YQ8A 4YVKA 1X7PA 4YQDA 3KNUA 1J85A 1V6ZA 3AI9X 4YVHA 1K3RA 3DCMX 3OINA 1ZJRA 2I6DA 3BBDA 1GZ0A 2CX8A 3N4JA 4CNDA 4YPYA 1UALA 4YQ4A 3NK7A 4YVGA 3O7BA 3KW2A 1IPAA 4YQIA 3QUVA 4YPXA 3OIIA 4YQ0A 3GYQA 4YQQA 1P9PA 1VHYA 5GMCA 5FAIA 3KY7A 4YQTA 2QWVA 4JWHA 4CNEA 3IC6A 1NS5A 4YQSA 2HA8A 4YQPA 1V2XA 3ONPA 5GMBA 4RG1A 1UAKA 4YQ5A 4J3CA 3BBEA 3ILKA 5D9FA 4H3ZA 4YQOA 3NK6A 4YQ3A 2QMMA 1VHKA 1TO0A 1MXIA 4YQ6A 4XBOA 4KDZA 4YQRA 4E8BA 2YY8A 4FAKA 4YQ1A 4YQKA 2EGVA 4L69A 4CNGA 1OY5A 2O3AA 4MCCA 4YQBA 2EGWA 4H3YA 4YQGA 4YQNA 4JWFA 5GM8A 4YQLA 4MCDA 4YQ2A 4YQJA 4YQ7A 4FMWA 4YQAA 4JALA 3N4KA 3AIAA 4YVJA 1VH0A 4X3MA 3BBHA 2V3KA 3AXZA 1NXZA 1UAJA 4JWJA 1X7OA 5CO4A 4JWGA
chains in the Genus database with same CATH topology
2V3JA 3IEFA 3KTYA 4PZKA 1Z85A 4IG6A 4YQCA 4YVIA 4MCBA 1UAMA 4YPZA 4YQ9A 4X3LA 3OIJA 4KGNA 4CNFA 4JAKA 3E5YA 4YPWA 2Z0YA 1O6DA 3L8UA 4YQ8A 4YVKA 1X7PA 4YQDA 3KNUA 1J85A 1V6ZA 3AI9X 4YVHA 1K3RA 3DCMX 3OINA 1ZJRA 2I6DA 3BBDA 1GZ0A 2CX8A 3N4JA 4CNDA 4YPYA 1UALA 4YQ4A 3NK7A 4YVGA 3O7BA 3KW2A 1IPAA 4YQIA 3QUVA 4YPXA 3OIIA 4YQ0A 3GYQA 4YQQA 1P9PA 1VHYA 5GMCA 5FAIA 3KY7A 4YQTA 2QWVA 4JWHA 4CNEA 3IC6A 1NS5A 4YQSA 2HA8A 4YQPA 1V2XA 3ONPA 5GMBA 4RG1A 1UAKA 4YQ5A 4J3CA 3BBEA 3ILKA 5D9FA 4H3ZA 4YQOA 3NK6A 4YQ3A 2QMMA 1VHKA 1TO0A 1MXIA 4YQ6A 4XBOA 4KDZA 4YQRA 4E8BA 2YY8A 4FAKA 4YQ1A 4YQKA 2EGVA 4L69A 4CNGA 1OY5A 2O3AA 4MCCA 4YQBA 2EGWA 4H3YA 4YQGA 4YQNA 4JWFA 5GM8A 4YQLA 4MCDA 4YQ2A 4YQJA 4YQ7A 4FMWA 4YQAA 4JALA 3N4KA 3AIAA 4YVJA 1VH0A 4X3MA 3BBHA 2V3KA 3AXZA 1NXZA 1UAJA 4JWJA 1X7OA 5CO4A 4JWGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V3J A;  3IEF A;  3KTY A;  4PZK A;  1Z85 A;  4IG6 A;  4YQC A;  4YVI A;  4MCB A;  1UAM A;  4YPZ A;  4YQ9 A;  4X3L A;  3OIJ A;  4KGN A;  4CNF A;  4JAK A;  3E5Y A;  4YPW A;  2Z0Y A;  1O6D A;  3L8U A;  4YQ8 A;  4YVK A;  1X7P A;  4YQD A;  3KNU A;  1J85 A;  1V6Z A;  3AI9 X;  4YVH A;  1K3R A;  3DCM X;  3OIN A;  1ZJR A;  2I6D A;  3BBD A;  1GZ0 A;  2CX8 A;  3N4J A;  4CND A;  4YPY A;  1UAL A;  4YQ4 A;  3NK7 A;  4YVG A;  3O7B A;  3KW2 A;  1IPA A;  4YQI A;  3QUV A;  4YPX A;  3OII A;  4YQ0 A;  3GYQ A;  4YQQ A;  1P9P A;  1VHY A;  5GMC A;  5FAI A;  3KY7 A;  4YQT A;  2QWV A;  4CNE A;  3IC6 A;  1NS5 A;  4YQS A;  2HA8 A;  4YQP A;  1V2X A;  3ONP A;  5GMB A;  4RG1 A;  1UAK A;  4YQ5 A;  4J3C A;  3BBE A;  3ILK A;  5D9F A;  4H3Z A;  4YQO A;  3NK6 A;  4YQ3 A;  2QMM A;  1VHK A;  1TO0 A;  1MXI A;  4YQ6 A;  4XBO A;  4KDZ A;  4YQR A;  4E8B A;  2YY8 A;  4FAK A;  4YQ1 A;  4YQK A;  4L69 A;  2EGV A;  4CNG A;  1OY5 A;  2O3A A;  4MCC A;  4YQB A;  2EGW A;  4H3Y A;  4YQG A;  4YQN A;  5GM8 A;  4YQL A;  4MCD A;  4YQ2 A;  4YQJ A;  4YQ7 A;  4YQA A;  4JAL A;  3N4K A;  3AIA A;  4YVJ A;  1VH0 A;  4X3M A;  3BBH A;  2V3K A;  3AXZ A;  1NXZ A;  1UAJ A;  1X7O A;  5CO4 A; 
#chains in the Genus database with same CATH topology
 2V3J A;  3IEF A;  3KTY A;  4PZK A;  1Z85 A;  4IG6 A;  4YQC A;  4YVI A;  4MCB A;  1UAM A;  4YPZ A;  4YQ9 A;  4X3L A;  3OIJ A;  4KGN A;  4CNF A;  4JAK A;  3E5Y A;  4YPW A;  2Z0Y A;  1O6D A;  3L8U A;  4YQ8 A;  4YVK A;  1X7P A;  4YQD A;  3KNU A;  1J85 A;  1V6Z A;  3AI9 X;  4YVH A;  1K3R A;  3DCM X;  3OIN A;  1ZJR A;  2I6D A;  3BBD A;  1GZ0 A;  2CX8 A;  3N4J A;  4CND A;  4YPY A;  1UAL A;  4YQ4 A;  3NK7 A;  4YVG A;  3O7B A;  3KW2 A;  1IPA A;  4YQI A;  3QUV A;  4YPX A;  3OII A;  4YQ0 A;  3GYQ A;  4YQQ A;  1P9P A;  1VHY A;  5GMC A;  5FAI A;  3KY7 A;  4YQT A;  2QWV A;  4JWH A;  4CNE A;  3IC6 A;  1NS5 A;  4YQS A;  2HA8 A;  4YQP A;  1V2X A;  3ONP A;  5GMB A;  4RG1 A;  1UAK A;  4YQ5 A;  4J3C A;  3BBE A;  3ILK A;  5D9F A;  4H3Z A;  4YQO A;  3NK6 A;  4YQ3 A;  2QMM A;  1VHK A;  1TO0 A;  1MXI A;  4YQ6 A;  4XBO A;  4KDZ A;  4YQR A;  4E8B A;  2YY8 A;  4FAK A;  4YQ1 A;  4YQK A;  2EGV A;  4L69 A;  4CNG A;  1OY5 A;  2O3A A;  4MCC A;  4YQB A;  2EGW A;  4H3Y A;  4YQG A;  4YQN A;  4JWF A;  5GM8 A;  4YQL A;  4MCD A;  4YQ2 A;  4YQJ A;  4YQ7 A;  4FMW A;  4YQA A;  4JAL A;  3N4K A;  3AIA A;  4YVJ A;  1VH0 A;  4X3M A;  3BBH A;  2V3K A;  3AXZ A;  1NXZ A;  1UAJ A;  4JWJ A;  1X7O A;  5CO4 A;  4JWG A; 
#chains in the Genus database with same CATH homology
 2V3J A;  3IEF A;  3KTY A;  4PZK A;  1Z85 A;  4IG6 A;  4YQC A;  4YVI A;  4MCB A;  1UAM A;  4YPZ A;  4YQ9 A;  4X3L A;  3OIJ A;  4KGN A;  4CNF A;  4JAK A;  3E5Y A;  4YPW A;  2Z0Y A;  1O6D A;  3L8U A;  4YQ8 A;  4YVK A;  1X7P A;  4YQD A;  3KNU A;  1J85 A;  1V6Z A;  3AI9 X;  4YVH A;  1K3R A;  3DCM X;  3OIN A;  1ZJR A;  2I6D A;  3BBD A;  1GZ0 A;  2CX8 A;  3N4J A;  4CND A;  4YPY A;  1UAL A;  4YQ4 A;  3NK7 A;  4YVG A;  3O7B A;  3KW2 A;  1IPA A;  4YQI A;  3QUV A;  4YPX A;  3OII A;  4YQ0 A;  3GYQ A;  4YQQ A;  1P9P A;  1VHY A;  5GMC A;  5FAI A;  3KY7 A;  4YQT A;  2QWV A;  4JWH A;  4CNE A;  3IC6 A;  1NS5 A;  4YQS A;  2HA8 A;  4YQP A;  1V2X A;  3ONP A;  5GMB A;  4RG1 A;  1UAK A;  4YQ5 A;  4J3C A;  3BBE A;  3ILK A;  5D9F A;  4H3Z A;  4YQO A;  3NK6 A;  4YQ3 A;  2QMM A;  1VHK A;  1TO0 A;  1MXI A;  4YQ6 A;  4XBO A;  4KDZ A;  4YQR A;  4E8B A;  2YY8 A;  4FAK A;  4YQ1 A;  4YQK A;  2EGV A;  4L69 A;  4CNG A;  1OY5 A;  2O3A A;  4MCC A;  4YQB A;  2EGW A;  4H3Y A;  4YQG A;  4YQN A;  4JWF A;  5GM8 A;  4YQL A;  4MCD A;  4YQ2 A;  4YQJ A;  4YQ7 A;  4FMW A;  4YQA A;  4JAL A;  3N4K A;  3AIA A;  4YVJ A;  1VH0 A;  4X3M A;  3BBH A;  2V3K A;  3AXZ A;  1NXZ A;  1UAJ A;  4JWJ A;  1X7O A;  5CO4 A;  4JWG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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