3IC6A

Crystal structure of putative methylase family protein from neisseria gonorrhoeae
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
Knots found
sequence length
217
structure length
213
Chain Sequence
LKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRRTAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQTDSPMTHLQQHAATHEQIKGMLAHMESV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of putative methylase family protein from Neisseria gonorrhoeae
rcsb
molecule keywords Putative methylase family protein
source organism Neisseria gonorrhoeae fa 1090
molecule tags Structural genomics, unknown function
total genus 55
structure length 213
sequence length 217
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2009-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3ic6A01
3OINA 4YQOA 1VH0A 2Z0YA 4YQPA 2I6DA 3KY7A 4YQ9A 2QWVA 3ILKA 1X7OA 3N4JA 1NXZA 1P9PA 4J3CA 4MCCA 4YQ8A 4CNGA 4IG6A 4H3YA 4X3LA 1GZ0A 1X7PA 1V6ZA 1J85A 5GMCA 2V3JA 4RG1A 4JAKA 1MXIA 1UAJA 1NS5A 1O6DA 4PZKA 4YPYA 4YQKA 4YQ3A 1IPAA 3O7BA 4YPZA 4KGNA 4YVIA 4YQ5A 1VHYA 3OIIA 4YQ4A 1VHKA 3NK7A 3AI9X 4YQ1A 3BBDA 4YQDA 2V3KA 2O3AA 3IC6A 3QUVA 5D9FA 4YQCA 4YQAA 2HA8A 3KNUA 4YQBA 4YQQA 5FAIA 4FAKA 4YVGA 5CO4A 5GM8A 1OY5A 4YQTA 4YQIA 4YQSA 1Z85A 3E5YA 2EGVA 2EGWA 1ZJRA 4YQ2A 4YQLA 2QMMA 4X3MA 3BBHA 1TO0A 3OIJA 2CX8A 4YPXA 3AIAA 4YQ6A 3AXZA 1UAMA 4YQ0A 3GYQA 3L8UA 4CNEA 2YY8A 3DCMX 4MCDA 4YQ7A 3BBEA 4CNDA 4YVHA 3IEFA 5GMBA 4MCBA 3KTYA 4JALA 4YQJA 4CNFA 4KDZA 3N4KA 4L69A 4YVKA 3KW2A 4E8BA 3NK6A 4XBOA 4YQRA 4YPWA 4YQNA 4H3ZA 4YQGA 1V2XA 1UALA 3ONPA 1UAKA 1K3RA 4YVJA
chains in the Genus database with same CATH superfamily
3OINA 4YQOA 1VH0A 4JWFA 2Z0YA 4YQPA 2I6DA 3KY7A 4YQ9A 2QWVA 3ILKA 1X7OA 3N4JA 1NXZA 1P9PA 4FMWA 4J3CA 4MCCA 4YQ8A 4CNGA 4IG6A 4H3YA 4X3LA 1GZ0A 1X7PA 1V6ZA 1J85A 5GMCA 2V3JA 4RG1A 4JAKA 1MXIA 4JWGA 1UAJA 1NS5A 1O6DA 4PZKA 4YPYA 4YQKA 4YQ3A 1IPAA 3O7BA 4YPZA 4KGNA 4YVIA 4YQ5A 1VHYA 3OIIA 4YQ4A 1VHKA 3NK7A 3AI9X 4YQ1A 3BBDA 4YQDA 2V3KA 2O3AA 3IC6A 3QUVA 5D9FA 4YQCA 4YQAA 2HA8A 3KNUA 4YQBA 4YQQA 5FAIA 4FAKA 4YVGA 5CO4A 5GM8A 1OY5A 4YQTA 4YQIA 4YQSA 1Z85A 3E5YA 2EGVA 2EGWA 1ZJRA 4YQ2A 4YQLA 2QMMA 4X3MA 3BBHA 1TO0A 3OIJA 2CX8A 4YPXA 3AIAA 4YQ6A 3AXZA 1UAMA 4YQ0A 3GYQA 3L8UA 4CNEA 4JWHA 2YY8A 3DCMX 4MCDA 4YQ7A 3BBEA 4CNDA 4YVHA 3IEFA 5GMBA 4MCBA 3KTYA 4JALA 4YQJA 4CNFA 4KDZA 4JWJA 3N4KA 4L69A 4YVKA 3KW2A 4E8BA 3NK6A 4XBOA 4YQRA 4YPWA 4YQNA 4H3ZA 4YQGA 1V2XA 1UALA 3ONPA 1UAKA 1K3RA 4YVJA
chains in the Genus database with same CATH topology
3OINA 4YQOA 1VH0A 4JWFA 2Z0YA 4YQPA 2I6DA 3KY7A 4YQ9A 2QWVA 3ILKA 1X7OA 3N4JA 1NXZA 1P9PA 4FMWA 4J3CA 4MCCA 4YQ8A 4CNGA 4IG6A 4H3YA 4X3LA 1GZ0A 1X7PA 1V6ZA 1J85A 5GMCA 2V3JA 4RG1A 4JAKA 1MXIA 4JWGA 1UAJA 1NS5A 1O6DA 4PZKA 4YPYA 4YQKA 4YQ3A 1IPAA 3O7BA 4YPZA 4KGNA 4YVIA 4YQ5A 1VHYA 3OIIA 4YQ4A 1VHKA 3NK7A 3AI9X 4YQ1A 3BBDA 4YQDA 2V3KA 2O3AA 3IC6A 3QUVA 5D9FA 4YQCA 4YQAA 2HA8A 3KNUA 4YQBA 4YQQA 5FAIA 4FAKA 4YVGA 5CO4A 5GM8A 1OY5A 4YQTA 4YQIA 4YQSA 1Z85A 3E5YA 2EGVA 2EGWA 1ZJRA 4YQ2A 4YQLA 2QMMA 4X3MA 3BBHA 1TO0A 3OIJA 2CX8A 4YPXA 3AIAA 4YQ6A 3AXZA 1UAMA 4YQ0A 3GYQA 3L8UA 4CNEA 4JWHA 2YY8A 3DCMX 4MCDA 4YQ7A 3BBEA 4CNDA 4YVHA 3IEFA 5GMBA 4MCBA 3KTYA 4JALA 4YQJA 4CNFA 4KDZA 4JWJA 3N4KA 4L69A 4YVKA 3KW2A 4E8BA 3NK6A 4XBOA 4YQRA 4YPWA 4YQNA 4H3ZA 4YQGA 1V2XA 1UALA 3ONPA 1UAKA 1K3RA 4YVJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OIN A;  4YQO A;  1VH0 A;  2Z0Y A;  4YQP A;  2I6D A;  3KY7 A;  4YQ9 A;  2QWV A;  3ILK A;  1X7O A;  3N4J A;  1NXZ A;  1P9P A;  4J3C A;  4MCC A;  4YQ8 A;  4CNG A;  4IG6 A;  4H3Y A;  4X3L A;  1GZ0 A;  1X7P A;  1V6Z A;  1J85 A;  5GMC A;  2V3J A;  4RG1 A;  4JAK A;  1MXI A;  1UAJ A;  1NS5 A;  1O6D A;  4PZK A;  4YPY A;  4YQK A;  4YQ3 A;  1IPA A;  3O7B A;  4YPZ A;  4KGN A;  4YVI A;  4YQ5 A;  1VHY A;  3OII A;  4YQ4 A;  1VHK A;  3NK7 A;  3AI9 X;  4YQ1 A;  3BBD A;  4YQD A;  2V3K A;  2O3A A;  3IC6 A;  3QUV A;  5D9F A;  4YQC A;  4YQA A;  2HA8 A;  3KNU A;  4YQB A;  4YQQ A;  5FAI A;  4FAK A;  4YVG A;  5CO4 A;  5GM8 A;  1OY5 A;  4YQT A;  4YQI A;  4YQS A;  1Z85 A;  3E5Y A;  2EGV A;  2EGW A;  1ZJR A;  4YQ2 A;  4YQL A;  2QMM A;  4X3M A;  3BBH A;  1TO0 A;  3OIJ A;  2CX8 A;  4YPX A;  3AIA A;  4YQ6 A;  3AXZ A;  1UAM A;  4YQ0 A;  3GYQ A;  3L8U A;  4CNE A;  2YY8 A;  3DCM X;  4MCD A;  4YQ7 A;  3BBE A;  4CND A;  4YVH A;  3IEF A;  5GMB A;  4MCB A;  3KTY A;  4JAL A;  4YQJ A;  4CNF A;  4KDZ A;  3N4K A;  4L69 A;  4YVK A;  3KW2 A;  4E8B A;  3NK6 A;  4XBO A;  4YQR A;  4YPW A;  4YQN A;  4H3Z A;  4YQG A;  1V2X A;  1UAL A;  3ONP A;  1UAK A;  1K3R A;  4YVJ A; 
#chains in the Genus database with same CATH topology
 3OIN A;  4YQO A;  1VH0 A;  4JWF A;  2Z0Y A;  4YQP A;  2I6D A;  3KY7 A;  4YQ9 A;  2QWV A;  3ILK A;  1X7O A;  3N4J A;  1NXZ A;  1P9P A;  4FMW A;  4J3C A;  4MCC A;  4YQ8 A;  4CNG A;  4IG6 A;  4H3Y A;  4X3L A;  1GZ0 A;  1X7P A;  1V6Z A;  1J85 A;  5GMC A;  2V3J A;  4RG1 A;  4JAK A;  1MXI A;  4JWG A;  1UAJ A;  1NS5 A;  1O6D A;  4PZK A;  4YPY A;  4YQK A;  4YQ3 A;  1IPA A;  3O7B A;  4YPZ A;  4KGN A;  4YVI A;  4YQ5 A;  1VHY A;  3OII A;  4YQ4 A;  1VHK A;  3NK7 A;  3AI9 X;  4YQ1 A;  3BBD A;  4YQD A;  2V3K A;  2O3A A;  3IC6 A;  3QUV A;  5D9F A;  4YQC A;  4YQA A;  2HA8 A;  3KNU A;  4YQB A;  4YQQ A;  5FAI A;  4FAK A;  4YVG A;  5CO4 A;  5GM8 A;  1OY5 A;  4YQT A;  4YQI A;  4YQS A;  1Z85 A;  3E5Y A;  2EGV A;  2EGW A;  1ZJR A;  4YQ2 A;  4YQL A;  2QMM A;  4X3M A;  3BBH A;  1TO0 A;  3OIJ A;  2CX8 A;  4YPX A;  3AIA A;  4YQ6 A;  3AXZ A;  1UAM A;  4YQ0 A;  3GYQ A;  3L8U A;  4CNE A;  4JWH A;  2YY8 A;  3DCM X;  4MCD A;  4YQ7 A;  3BBE A;  4CND A;  4YVH A;  3IEF A;  5GMB A;  4MCB A;  3KTY A;  4JAL A;  4YQJ A;  4CNF A;  4KDZ A;  4JWJ A;  3N4K A;  4L69 A;  4YVK A;  3KW2 A;  4E8B A;  3NK6 A;  4XBO A;  4YQR A;  4YPW A;  4YQN A;  4H3Z A;  4YQG A;  1V2X A;  1UAL A;  3ONP A;  1UAK A;  1K3R A;  4YVJ A; 
#chains in the Genus database with same CATH homology
 3OIN A;  4YQO A;  1VH0 A;  4JWF A;  2Z0Y A;  4YQP A;  2I6D A;  3KY7 A;  4YQ9 A;  2QWV A;  3ILK A;  1X7O A;  3N4J A;  1NXZ A;  1P9P A;  4FMW A;  4J3C A;  4MCC A;  4YQ8 A;  4CNG A;  4IG6 A;  4H3Y A;  4X3L A;  1GZ0 A;  1X7P A;  1V6Z A;  1J85 A;  5GMC A;  2V3J A;  4RG1 A;  4JAK A;  1MXI A;  4JWG A;  1UAJ A;  1NS5 A;  1O6D A;  4PZK A;  4YPY A;  4YQK A;  4YQ3 A;  1IPA A;  3O7B A;  4YPZ A;  4KGN A;  4YVI A;  4YQ5 A;  1VHY A;  3OII A;  4YQ4 A;  1VHK A;  3NK7 A;  3AI9 X;  4YQ1 A;  3BBD A;  4YQD A;  2V3K A;  2O3A A;  3IC6 A;  3QUV A;  5D9F A;  4YQC A;  4YQA A;  2HA8 A;  3KNU A;  4YQB A;  4YQQ A;  5FAI A;  4FAK A;  4YVG A;  5CO4 A;  5GM8 A;  1OY5 A;  4YQT A;  4YQI A;  4YQS A;  1Z85 A;  3E5Y A;  2EGV A;  2EGW A;  1ZJR A;  4YQ2 A;  4YQL A;  2QMM A;  4X3M A;  3BBH A;  1TO0 A;  3OIJ A;  2CX8 A;  4YPX A;  3AIA A;  4YQ6 A;  3AXZ A;  1UAM A;  4YQ0 A;  3GYQ A;  3L8U A;  4CNE A;  4JWH A;  2YY8 A;  3DCM X;  4MCD A;  4YQ7 A;  3BBE A;  4CND A;  4YVH A;  3IEF A;  5GMB A;  4MCB A;  3KTY A;  4JAL A;  4YQJ A;  4CNF A;  4KDZ A;  4JWJ A;  3N4K A;  4L69 A;  4YVK A;  3KW2 A;  4E8B A;  3NK6 A;  4XBO A;  4YQR A;  4YPW A;  4YQN A;  4H3Z A;  4YQG A;  1V2X A;  1UAL A;  3ONP A;  1UAK A;  1K3R A;  4YVJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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