3IC6A

Crystal structure of putative methylase family protein from neisseria gonorrhoeae
Total Genus 55
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
Knots found
sequence length
217
structure length
213
Chain Sequence
LKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRRTAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQTDSPMTHLQQHAATHEQIKGMLAHMESV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
source organism Neisseria gonorrhoeae fa 1090
publication title Crystal structure of putative methylase family protein from Neisseria gonorrhoeae
rcsb
molecule keywords Putative methylase family protein
total genus 55
structure length 213
sequence length 217
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2009-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3ic6A01
1VHKA 3DCMX 1O6DA 4L69A 4YQCA 3KTYA 4CNGA 4YQ0A 3NK7A 4YQRA 3GYQA 4YQNA 4MCCA 5CO4A 4H3YA 1OY5A 4YQQA 1TO0A 3BBEA 3IEFA 3N4KA 4YQBA 3O7BA 4MCDA 4YQ2A 4YVJA 3KNUA 2QWVA 3ONPA 4X3LA 4JALA 1UAMA 2Z0YA 4J3CA 4X3MA 3IC6A 1IPAA 2O3AA 2HA8A 4YQSA 3BBHA 1VH0A 4CNDA 3NK6A 4RG1A 3AXZA 4CNEA 4YPXA 2YY8A 1ZJRA 1NXZA 5GMCA 1K3RA 5GMBA 4YQPA 4YVHA 2V3JA 3QUVA 3N4JA 5GM8A 4YQOA 4XBOA 3OIIA 1X7OA 3E5YA 4YVKA 4CNFA 4KGNA 3OIJA 4YVGA 4YQ5A 4YQIA 4YQJA 2I6DA 4H3ZA 3AI9X 4IG6A 3L8UA 4PZKA 1UALA 1NS5A 2QMMA 4YQAA 2CX8A 2V3KA 4YPYA 1MXIA 1Z85A 1J85A 4YPWA 5FAIA 2EGWA 3KY7A 3BBDA 4YQ3A 2EGVA 4YQKA 1X7PA 1GZ0A 4YPZA 4YQLA 4KDZA 4YQDA 5D9FA 4YQTA 1V2XA 4YQ7A 4YQ4A 1UAKA 4JAKA 3OINA 4YQGA 3AIAA 4YQ9A 4FAKA 1V6ZA 1UAJA 4MCBA 4YQ8A 4YQ6A 1VHYA 3ILKA 1P9PA 3KW2A 4E8BA 4YQ1A 4YVIA
chains in the Genus database with same CATH superfamily
1VHKA 3DCMX 1O6DA 4L69A 4YQCA 3KTYA 4CNGA 4YQ0A 3NK7A 4YQRA 3GYQA 4YQNA 4MCCA 5CO4A 4H3YA 4JWGA 1OY5A 4YQQA 1TO0A 3BBEA 3IEFA 3N4KA 4YQBA 3O7BA 4MCDA 4YQ2A 4YVJA 3KNUA 2QWVA 3ONPA 4X3LA 4JALA 1UAMA 2Z0YA 4J3CA 4X3MA 3IC6A 1IPAA 2O3AA 2HA8A 4YQSA 3BBHA 1VH0A 4CNDA 3NK6A 4RG1A 3AXZA 4CNEA 4YPXA 2YY8A 1ZJRA 1NXZA 5GMCA 1K3RA 5GMBA 4YQPA 4YVHA 2V3JA 3QUVA 3N4JA 5GM8A 4YQOA 4XBOA 3OIIA 1X7OA 3E5YA 4YVKA 4CNFA 4KGNA 4JWHA 3OIJA 4YVGA 4YQ5A 4YQIA 4JWJA 4YQJA 2I6DA 4H3ZA 3AI9X 4IG6A 3L8UA 4PZKA 1UALA 1NS5A 2QMMA 4YQAA 2CX8A 2V3KA 4YPYA 1MXIA 1Z85A 1J85A 4YPWA 5FAIA 2EGWA 3KY7A 3BBDA 4YQ3A 2EGVA 4YQKA 1X7PA 1GZ0A 4YPZA 4YQLA 4FMWA 4JWFA 4KDZA 4YQDA 5D9FA 4YQTA 1V2XA 4YQ7A 4YQ4A 1UAKA 4JAKA 3OINA 4YQGA 3AIAA 4YQ9A 4FAKA 1V6ZA 1UAJA 4MCBA 4YQ8A 4YQ6A 1VHYA 3ILKA 1P9PA 3KW2A 4E8BA 4YQ1A 4YVIA
chains in the Genus database with same CATH topology
1VHKA 3DCMX 1O6DA 4L69A 4YQCA 3KTYA 4CNGA 4YQ0A 3NK7A 4YQRA 3GYQA 4YQNA 4MCCA 5CO4A 4H3YA 4JWGA 1OY5A 4YQQA 1TO0A 3BBEA 3IEFA 3N4KA 4YQBA 3O7BA 4MCDA 4YQ2A 4YVJA 3KNUA 2QWVA 3ONPA 4X3LA 4JALA 1UAMA 2Z0YA 4J3CA 4X3MA 3IC6A 1IPAA 2O3AA 2HA8A 4YQSA 3BBHA 1VH0A 4CNDA 3NK6A 4RG1A 3AXZA 4CNEA 4YPXA 2YY8A 1ZJRA 1NXZA 5GMCA 1K3RA 5GMBA 4YQPA 4YVHA 2V3JA 3QUVA 3N4JA 5GM8A 4YQOA 4XBOA 3OIIA 1X7OA 3E5YA 4YVKA 4CNFA 4KGNA 4JWHA 3OIJA 4YVGA 4YQ5A 4YQIA 4JWJA 4YQJA 2I6DA 4H3ZA 3AI9X 4IG6A 3L8UA 4PZKA 1UALA 1NS5A 2QMMA 4YQAA 2CX8A 2V3KA 4YPYA 1MXIA 1Z85A 1J85A 4YPWA 5FAIA 2EGWA 3KY7A 3BBDA 4YQ3A 2EGVA 4YQKA 1X7PA 1GZ0A 4YPZA 4YQLA 4FMWA 4JWFA 4KDZA 4YQDA 5D9FA 4YQTA 1V2XA 4YQ7A 4YQ4A 1UAKA 4JAKA 3OINA 4YQGA 3AIAA 4YQ9A 4FAKA 1V6ZA 1UAJA 4MCBA 4YQ8A 4YQ6A 1VHYA 3ILKA 1P9PA 3KW2A 4E8BA 4YQ1A 4YVIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VHK A;  3DCM X;  1O6D A;  4L69 A;  4YQC A;  3KTY A;  4CNG A;  4YQ0 A;  3NK7 A;  4YQR A;  3GYQ A;  4YQN A;  4MCC A;  5CO4 A;  4H3Y A;  1OY5 A;  4YQQ A;  1TO0 A;  3BBE A;  3IEF A;  3N4K A;  4YQB A;  3O7B A;  4MCD A;  4YQ2 A;  4YVJ A;  3KNU A;  2QWV A;  3ONP A;  4X3L A;  4JAL A;  1UAM A;  2Z0Y A;  4J3C A;  4X3M A;  3IC6 A;  1IPA A;  2O3A A;  2HA8 A;  4YQS A;  3BBH A;  1VH0 A;  4CND A;  3NK6 A;  4RG1 A;  3AXZ A;  4CNE A;  4YPX A;  2YY8 A;  1ZJR A;  1NXZ A;  5GMC A;  1K3R A;  5GMB A;  4YQP A;  4YVH A;  2V3J A;  3QUV A;  3N4J A;  5GM8 A;  4YQO A;  4XBO A;  3OII A;  1X7O A;  3E5Y A;  4YVK A;  4CNF A;  4KGN A;  3OIJ A;  4YVG A;  4YQ5 A;  4YQI A;  4YQJ A;  2I6D A;  4H3Z A;  3AI9 X;  4IG6 A;  3L8U A;  4PZK A;  1UAL A;  1NS5 A;  2QMM A;  4YQA A;  2CX8 A;  2V3K A;  4YPY A;  1MXI A;  1Z85 A;  1J85 A;  4YPW A;  5FAI A;  2EGW A;  3KY7 A;  3BBD A;  4YQ3 A;  2EGV A;  4YQK A;  1X7P A;  1GZ0 A;  4YPZ A;  4YQL A;  4KDZ A;  4YQD A;  5D9F A;  4YQT A;  1V2X A;  4YQ7 A;  4YQ4 A;  1UAK A;  4JAK A;  3OIN A;  4YQG A;  3AIA A;  4YQ9 A;  4FAK A;  1V6Z A;  1UAJ A;  4MCB A;  4YQ8 A;  4YQ6 A;  1VHY A;  3ILK A;  1P9P A;  3KW2 A;  4E8B A;  4YQ1 A;  4YVI A; 
#chains in the Genus database with same CATH topology
 1VHK A;  3DCM X;  1O6D A;  4L69 A;  4YQC A;  3KTY A;  4CNG A;  4YQ0 A;  3NK7 A;  4YQR A;  3GYQ A;  4YQN A;  4MCC A;  5CO4 A;  4H3Y A;  4JWG A;  1OY5 A;  4YQQ A;  1TO0 A;  3BBE A;  3IEF A;  3N4K A;  4YQB A;  3O7B A;  4MCD A;  4YQ2 A;  4YVJ A;  3KNU A;  2QWV A;  3ONP A;  4X3L A;  4JAL A;  1UAM A;  2Z0Y A;  4J3C A;  4X3M A;  3IC6 A;  1IPA A;  2O3A A;  2HA8 A;  4YQS A;  3BBH A;  1VH0 A;  4CND A;  3NK6 A;  4RG1 A;  3AXZ A;  4CNE A;  4YPX A;  2YY8 A;  1ZJR A;  1NXZ A;  5GMC A;  1K3R A;  5GMB A;  4YQP A;  4YVH A;  2V3J A;  3QUV A;  3N4J A;  5GM8 A;  4YQO A;  4XBO A;  3OII A;  1X7O A;  3E5Y A;  4YVK A;  4CNF A;  4KGN A;  4JWH A;  3OIJ A;  4YVG A;  4YQ5 A;  4YQI A;  4JWJ A;  4YQJ A;  2I6D A;  4H3Z A;  3AI9 X;  4IG6 A;  3L8U A;  4PZK A;  1UAL A;  1NS5 A;  2QMM A;  4YQA A;  2CX8 A;  2V3K A;  4YPY A;  1MXI A;  1Z85 A;  1J85 A;  4YPW A;  5FAI A;  2EGW A;  3KY7 A;  3BBD A;  4YQ3 A;  2EGV A;  4YQK A;  1X7P A;  1GZ0 A;  4YPZ A;  4YQL A;  4FMW A;  4JWF A;  4KDZ A;  4YQD A;  5D9F A;  4YQT A;  1V2X A;  4YQ7 A;  4YQ4 A;  1UAK A;  4JAK A;  3OIN A;  4YQG A;  3AIA A;  4YQ9 A;  4FAK A;  1V6Z A;  1UAJ A;  4MCB A;  4YQ8 A;  4YQ6 A;  1VHY A;  3ILK A;  1P9P A;  3KW2 A;  4E8B A;  4YQ1 A;  4YVI A; 
#chains in the Genus database with same CATH homology
 1VHK A;  3DCM X;  1O6D A;  4L69 A;  4YQC A;  3KTY A;  4CNG A;  4YQ0 A;  3NK7 A;  4YQR A;  3GYQ A;  4YQN A;  4MCC A;  5CO4 A;  4H3Y A;  4JWG A;  1OY5 A;  4YQQ A;  1TO0 A;  3BBE A;  3IEF A;  3N4K A;  4YQB A;  3O7B A;  4MCD A;  4YQ2 A;  4YVJ A;  3KNU A;  2QWV A;  3ONP A;  4X3L A;  4JAL A;  1UAM A;  2Z0Y A;  4J3C A;  4X3M A;  3IC6 A;  1IPA A;  2O3A A;  2HA8 A;  4YQS A;  3BBH A;  1VH0 A;  4CND A;  3NK6 A;  4RG1 A;  3AXZ A;  4CNE A;  4YPX A;  2YY8 A;  1ZJR A;  1NXZ A;  5GMC A;  1K3R A;  5GMB A;  4YQP A;  4YVH A;  2V3J A;  3QUV A;  3N4J A;  5GM8 A;  4YQO A;  4XBO A;  3OII A;  1X7O A;  3E5Y A;  4YVK A;  4CNF A;  4KGN A;  4JWH A;  3OIJ A;  4YVG A;  4YQ5 A;  4YQI A;  4JWJ A;  4YQJ A;  2I6D A;  4H3Z A;  3AI9 X;  4IG6 A;  3L8U A;  4PZK A;  1UAL A;  1NS5 A;  2QMM A;  4YQA A;  2CX8 A;  2V3K A;  4YPY A;  1MXI A;  1Z85 A;  1J85 A;  4YPW A;  5FAI A;  2EGW A;  3KY7 A;  3BBD A;  4YQ3 A;  2EGV A;  4YQK A;  1X7P A;  1GZ0 A;  4YPZ A;  4YQL A;  4FMW A;  4JWF A;  4KDZ A;  4YQD A;  5D9F A;  4YQT A;  1V2X A;  4YQ7 A;  4YQ4 A;  1UAK A;  4JAK A;  3OIN A;  4YQG A;  3AIA A;  4YQ9 A;  4FAK A;  1V6Z A;  1UAJ A;  4MCB A;  4YQ8 A;  4YQ6 A;  1VHY A;  3ILK A;  1P9P A;  3KW2 A;  4E8B A;  4YQ1 A;  4YVI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...