5FAIA

Emg1 n1-specific pseudouridine methyltransferase
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
Knots found
sequence length
209
structure length
209
Chain Sequence
b'NKIGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ribosomal RNA small subunit methyltransferase NEP1
publication title EMG1 N1-Specific Pseudouridine Methyltransferase
rcsb
source organism Homo sapiens
molecule tags Transferase
total genus 57
structure length 209
sequence length 209
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.-:
pdb deposition date 2015-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 5faiA01
3L8UA 2I6DA 4YQ1A 3N4KA 4KGNA 1ZJRA 4MCBA 4YQ4A 4YPWA 4YQ7A 4FAKA 1VHYA 1X7OA 4YQJA 4KDZA 3BBEA 1OY5A 5GMBA 4JALA 3AIAA 1VH0A 1J85A 3IC6A 4MCCA 2YY8A 4CNDA 4YVHA 3NK7A 4JAKA 4YVKA 1TO0A 4X3MA 3KW2A 1NS5A 4YQ2A 4YQ5A 4YQTA 3GYQA 5GM8A 2O3AA 1K3RA 4IG6A 4J3CA 1UAMA 1GZ0A 5D9FA 5CO4A 1UAKA 3KTYA 3ONPA 4YQ6A 4MCDA 4E8BA 3BBDA 4YQGA 1V2XA 2QWVA 4YQAA 4XBOA 4YQCA 5GMCA 2EGWA 2V3KA 4YPZA 3KNUA 4YQ9A 1IPAA 3N4JA 1P9PA 4YQ8A 4YQKA 3BBHA 4YPYA 4YQLA 4YQPA 5FAIA 4YVJA 3OIIA 3AXZA 1UAJA 1X7PA 4YQRA 4YQOA 1VHKA 4YPXA 3E5YA 4RG1A 1O6DA 3NK6A 4YQSA 4PZKA 4CNGA 3OIJA 1NXZA 4YVGA 3OINA 3DCMX 4CNFA 3AI9X 3QUVA 1Z85A 4YQDA 3ILKA 2CX8A 4X3LA 1MXIA 2QMMA 4YQ0A 4H3YA 4YQNA 2EGVA 3IEFA 4CNEA 4YQQA 1UALA 2V3JA 4YQIA 2Z0YA 4YVIA 4L69A 1V6ZA 4H3ZA 2HA8A 3KY7A 4YQBA 3O7BA 4YQ3A
chains in the Genus database with same CATH superfamily
3L8UA 2I6DA 4YQ1A 3N4KA 4KGNA 1ZJRA 4MCBA 4YQ4A 4YPWA 4YQ7A 4FAKA 1VHYA 1X7OA 4YQJA 4KDZA 3BBEA 1OY5A 5GMBA 4JALA 3AIAA 1VH0A 1J85A 3IC6A 4JWJA 4MCCA 2YY8A 4CNDA 4YVHA 3NK7A 4JAKA 4YVKA 1TO0A 4X3MA 3KW2A 1NS5A 4YQ2A 4FMWA 4YQ5A 4YQTA 3GYQA 5GM8A 2O3AA 1K3RA 4IG6A 4J3CA 1UAMA 1GZ0A 5D9FA 5CO4A 1UAKA 3KTYA 3ONPA 4YQ6A 4JWHA 4MCDA 4E8BA 3BBDA 4YQGA 1V2XA 2QWVA 4YQAA 4XBOA 4YQCA 5GMCA 2EGWA 2V3KA 4YPZA 3KNUA 4YQ9A 1IPAA 3N4JA 1P9PA 4YQ8A 4YQKA 3BBHA 4YPYA 4YQLA 4YQPA 5FAIA 4YVJA 3OIIA 3AXZA 1UAJA 1X7PA 4YQRA 4YQOA 1VHKA 4YPXA 3E5YA 4RG1A 1O6DA 3NK6A 4JWFA 4JWGA 4YQSA 4PZKA 4CNGA 3OIJA 1NXZA 4YVGA 3OINA 3DCMX 4CNFA 3AI9X 3QUVA 1Z85A 4YQDA 3ILKA 2CX8A 4X3LA 1MXIA 2QMMA 4YQ0A 4H3YA 4YQNA 2EGVA 3IEFA 4CNEA 4YQQA 1UALA 2V3JA 4YQIA 2Z0YA 4YVIA 4L69A 1V6ZA 4H3ZA 2HA8A 3KY7A 4YQBA 3O7BA 4YQ3A
chains in the Genus database with same CATH topology
3L8UA 2I6DA 4YQ1A 3N4KA 4KGNA 1ZJRA 4MCBA 4YQ4A 4YPWA 4YQ7A 4FAKA 1VHYA 1X7OA 4YQJA 4KDZA 3BBEA 1OY5A 5GMBA 4JALA 3AIAA 1VH0A 1J85A 3IC6A 4JWJA 4MCCA 2YY8A 4CNDA 4YVHA 3NK7A 4JAKA 4YVKA 1TO0A 4X3MA 3KW2A 1NS5A 4YQ2A 4FMWA 4YQ5A 4YQTA 3GYQA 5GM8A 2O3AA 1K3RA 4IG6A 4J3CA 1UAMA 1GZ0A 5D9FA 5CO4A 1UAKA 3KTYA 3ONPA 4YQ6A 4JWHA 4MCDA 4E8BA 3BBDA 4YQGA 1V2XA 2QWVA 4YQAA 4XBOA 4YQCA 5GMCA 2EGWA 2V3KA 4YPZA 3KNUA 4YQ9A 1IPAA 3N4JA 1P9PA 4YQ8A 4YQKA 3BBHA 4YPYA 4YQLA 4YQPA 5FAIA 4YVJA 3OIIA 3AXZA 1UAJA 1X7PA 4YQRA 4YQOA 1VHKA 4YPXA 3E5YA 4RG1A 1O6DA 3NK6A 4JWFA 4JWGA 4YQSA 4PZKA 4CNGA 3OIJA 1NXZA 4YVGA 3OINA 3DCMX 4CNFA 3AI9X 3QUVA 1Z85A 4YQDA 3ILKA 2CX8A 4X3LA 1MXIA 2QMMA 4YQ0A 4H3YA 4YQNA 2EGVA 3IEFA 4CNEA 4YQQA 1UALA 2V3JA 4YQIA 2Z0YA 4YVIA 4L69A 1V6ZA 4H3ZA 2HA8A 3KY7A 4YQBA 3O7BA 4YQ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L8U A;  2I6D A;  4YQ1 A;  3N4K A;  4KGN A;  1ZJR A;  4MCB A;  4YQ4 A;  4YPW A;  4YQ7 A;  4FAK A;  1VHY A;  1X7O A;  4YQJ A;  4KDZ A;  3BBE A;  1OY5 A;  5GMB A;  4JAL A;  3AIA A;  1VH0 A;  1J85 A;  3IC6 A;  4MCC A;  2YY8 A;  4CND A;  4YVH A;  3NK7 A;  4JAK A;  4YVK A;  1TO0 A;  4X3M A;  3KW2 A;  1NS5 A;  4YQ2 A;  4YQ5 A;  4YQT A;  3GYQ A;  5GM8 A;  2O3A A;  1K3R A;  4IG6 A;  4J3C A;  1UAM A;  1GZ0 A;  5D9F A;  5CO4 A;  1UAK A;  3KTY A;  3ONP A;  4YQ6 A;  4MCD A;  4E8B A;  3BBD A;  4YQG A;  1V2X A;  2QWV A;  4YQA A;  4XBO A;  4YQC A;  5GMC A;  2EGW A;  2V3K A;  4YPZ A;  3KNU A;  4YQ9 A;  1IPA A;  3N4J A;  1P9P A;  4YQ8 A;  4YQK A;  3BBH A;  4YPY A;  4YQL A;  4YQP A;  5FAI A;  4YVJ A;  3OII A;  3AXZ A;  1UAJ A;  1X7P A;  4YQR A;  4YQO A;  1VHK A;  4YPX A;  3E5Y A;  4RG1 A;  1O6D A;  3NK6 A;  4YQS A;  4PZK A;  4CNG A;  3OIJ A;  1NXZ A;  4YVG A;  3OIN A;  3DCM X;  4CNF A;  3AI9 X;  3QUV A;  1Z85 A;  4YQD A;  3ILK A;  2CX8 A;  4X3L A;  1MXI A;  2QMM A;  4YQ0 A;  4H3Y A;  4YQN A;  2EGV A;  3IEF A;  4CNE A;  4YQQ A;  1UAL A;  2V3J A;  4YQI A;  2Z0Y A;  4YVI A;  4L69 A;  1V6Z A;  4H3Z A;  2HA8 A;  3KY7 A;  4YQB A;  3O7B A;  4YQ3 A; 
#chains in the Genus database with same CATH topology
 3L8U A;  2I6D A;  4YQ1 A;  3N4K A;  4KGN A;  1ZJR A;  4MCB A;  4YQ4 A;  4YPW A;  4YQ7 A;  4FAK A;  1VHY A;  1X7O A;  4YQJ A;  4KDZ A;  3BBE A;  1OY5 A;  5GMB A;  4JAL A;  3AIA A;  1VH0 A;  1J85 A;  3IC6 A;  4JWJ A;  4MCC A;  2YY8 A;  4CND A;  4YVH A;  3NK7 A;  4JAK A;  4YVK A;  1TO0 A;  4X3M A;  3KW2 A;  1NS5 A;  4YQ2 A;  4FMW A;  4YQ5 A;  4YQT A;  3GYQ A;  5GM8 A;  2O3A A;  1K3R A;  4IG6 A;  4J3C A;  1UAM A;  1GZ0 A;  5D9F A;  5CO4 A;  1UAK A;  3KTY A;  3ONP A;  4YQ6 A;  4JWH A;  4MCD A;  4E8B A;  3BBD A;  4YQG A;  1V2X A;  2QWV A;  4YQA A;  4XBO A;  4YQC A;  5GMC A;  2EGW A;  2V3K A;  4YPZ A;  3KNU A;  4YQ9 A;  1IPA A;  3N4J A;  1P9P A;  4YQ8 A;  4YQK A;  3BBH A;  4YPY A;  4YQL A;  4YQP A;  5FAI A;  4YVJ A;  3OII A;  3AXZ A;  1UAJ A;  1X7P A;  4YQR A;  4YQO A;  1VHK A;  4YPX A;  3E5Y A;  4RG1 A;  1O6D A;  3NK6 A;  4JWF A;  4JWG A;  4YQS A;  4PZK A;  4CNG A;  3OIJ A;  1NXZ A;  4YVG A;  3OIN A;  3DCM X;  4CNF A;  3AI9 X;  3QUV A;  1Z85 A;  4YQD A;  3ILK A;  2CX8 A;  4X3L A;  1MXI A;  2QMM A;  4YQ0 A;  4H3Y A;  4YQN A;  2EGV A;  3IEF A;  4CNE A;  4YQQ A;  1UAL A;  2V3J A;  4YQI A;  2Z0Y A;  4YVI A;  4L69 A;  1V6Z A;  4H3Z A;  2HA8 A;  3KY7 A;  4YQB A;  3O7B A;  4YQ3 A; 
#chains in the Genus database with same CATH homology
 3L8U A;  2I6D A;  4YQ1 A;  3N4K A;  4KGN A;  1ZJR A;  4MCB A;  4YQ4 A;  4YPW A;  4YQ7 A;  4FAK A;  1VHY A;  1X7O A;  4YQJ A;  4KDZ A;  3BBE A;  1OY5 A;  5GMB A;  4JAL A;  3AIA A;  1VH0 A;  1J85 A;  3IC6 A;  4JWJ A;  4MCC A;  2YY8 A;  4CND A;  4YVH A;  3NK7 A;  4JAK A;  4YVK A;  1TO0 A;  4X3M A;  3KW2 A;  1NS5 A;  4YQ2 A;  4FMW A;  4YQ5 A;  4YQT A;  3GYQ A;  5GM8 A;  2O3A A;  1K3R A;  4IG6 A;  4J3C A;  1UAM A;  1GZ0 A;  5D9F A;  5CO4 A;  1UAK A;  3KTY A;  3ONP A;  4YQ6 A;  4JWH A;  4MCD A;  4E8B A;  3BBD A;  4YQG A;  1V2X A;  2QWV A;  4YQA A;  4XBO A;  4YQC A;  5GMC A;  2EGW A;  2V3K A;  4YPZ A;  3KNU A;  4YQ9 A;  1IPA A;  3N4J A;  1P9P A;  4YQ8 A;  4YQK A;  3BBH A;  4YPY A;  4YQL A;  4YQP A;  5FAI A;  4YVJ A;  3OII A;  3AXZ A;  1UAJ A;  1X7P A;  4YQR A;  4YQO A;  1VHK A;  4YPX A;  3E5Y A;  4RG1 A;  1O6D A;  3NK6 A;  4JWF A;  4JWG A;  4YQS A;  4PZK A;  4CNG A;  3OIJ A;  1NXZ A;  4YVG A;  3OIN A;  3DCM X;  4CNF A;  3AI9 X;  3QUV A;  1Z85 A;  4YQD A;  3ILK A;  2CX8 A;  4X3L A;  1MXI A;  2QMM A;  4YQ0 A;  4H3Y A;  4YQN A;  2EGV A;  3IEF A;  4CNE A;  4YQQ A;  1UAL A;  2V3J A;  4YQI A;  2Z0Y A;  4YVI A;  4L69 A;  1V6Z A;  4H3Z A;  2HA8 A;  3KY7 A;  4YQB A;  3O7B A;  4YQ3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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