5FAIA

Emg1 n1-specific pseudouridine methyltransferase
Total Genus 57
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
Knots found
sequence length
209
structure length
209
Chain Sequence
NKIGGRRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSIPVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEVWGVI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords Ribosomal RNA small subunit methyltransferase NEP1
publication title EMG1 N1-Specific Pseudouridine Methyltransferase
rcsb
source organism Homo sapiens
total genus 57
structure length 209
sequence length 209
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.-:
pdb deposition date 2015-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 5faiA01
4YQ8A 4MCBA 4YQ0A 1X7OA 4YQIA 5CO4A 4YQKA 1UALA 1UAKA 4YQGA 3BBDA 5GM8A 1K3RA 4KDZA 5GMBA 1V6ZA 3L8UA 4YQAA 5D9FA 4YQQA 3N4KA 4JAKA 4YQ5A 1NS5A 4CNDA 1VHYA 4IG6A 1J85A 2HA8A 4YPZA 5FAIA 1MXIA 3BBHA 1OY5A 4FAKA 3KW2A 4YQ3A 1O6DA 2Z0YA 4YQ7A 1VHKA 4YQPA 4YQRA 4RG1A 4YPWA 4YQ4A 4YQLA 2QWVA 4YQJA 4YQDA 3OIJA 3ILKA 4YVKA 3AI9X 2CX8A 4YVIA 4YQNA 4MCCA 2EGVA 1UAJA 4YQTA 1X7PA 3DCMX 3O7BA 4YQ9A 3BBEA 3NK6A 4YPYA 3NK7A 3KY7A 3AIAA 4X3LA 4J3CA 4MCDA 4YQ2A 3ONPA 3KNUA 1NXZA 3E5YA 1UAMA 1P9PA 3N4JA 4YQSA 1Z85A 4L69A 3OIIA 4YQ1A 1VH0A 3OINA 4YPXA 3QUVA 4JALA 4YQ6A 4KGNA 4YVHA 4XBOA 3IEFA 2V3KA 4E8BA 4YVJA 1ZJRA 1TO0A 4PZKA 2V3JA 2EGWA 4YQBA 4H3ZA 4CNFA 1IPAA 1GZ0A 1V2XA 2I6DA 2YY8A 3KTYA 4H3YA 4X3MA 4YVGA 4YQOA 3IC6A 4CNGA 2QMMA 3AXZA 4YQCA 3GYQA 5GMCA 2O3AA 4CNEA
chains in the Genus database with same CATH superfamily
4YQ8A 4MCBA 4YQ0A 1X7OA 4YQIA 5CO4A 4YQKA 1UALA 1UAKA 4YQGA 3BBDA 5GM8A 1K3RA 4KDZA 5GMBA 1V6ZA 3L8UA 4YQAA 5D9FA 4YQQA 3N4KA 4JAKA 4YQ5A 1NS5A 4CNDA 1VHYA 4IG6A 1J85A 2HA8A 4YPZA 5FAIA 1MXIA 3BBHA 1OY5A 4FAKA 3KW2A 4YQ3A 1O6DA 2Z0YA 4JWHA 4YQ7A 1VHKA 4YQPA 4YQRA 4RG1A 4YPWA 4JWFA 4YQ4A 4YQLA 2QWVA 4YQJA 4YQDA 3OIJA 3ILKA 4YVKA 3AI9X 2CX8A 4YVIA 4YQNA 4MCCA 2EGVA 1UAJA 4FMWA 1X7PA 3DCMX 4YQTA 3O7BA 4YQ9A 3BBEA 3NK6A 4YPYA 3NK7A 3KY7A 3AIAA 4JWGA 4X3LA 4J3CA 4MCDA 4YQ2A 3ONPA 3KNUA 1NXZA 3E5YA 1UAMA 1P9PA 3N4JA 4YQSA 1Z85A 4L69A 3OIIA 4YQ1A 1VH0A 3OINA 4YPXA 3QUVA 4JALA 4JWJA 4YQ6A 4KGNA 4YVHA 4XBOA 3IEFA 2V3KA 4E8BA 4YVJA 1ZJRA 1TO0A 4PZKA 2V3JA 2EGWA 4YQBA 4H3ZA 4CNFA 1IPAA 1GZ0A 1V2XA 2I6DA 2YY8A 3KTYA 4H3YA 4X3MA 4YVGA 4YQOA 3IC6A 4CNGA 2QMMA 3AXZA 4YQCA 3GYQA 5GMCA 2O3AA 4CNEA
chains in the Genus database with same CATH topology
4YQ8A 4MCBA 4YQ0A 1X7OA 4YQIA 5CO4A 4YQKA 1UALA 1UAKA 4YQGA 3BBDA 5GM8A 1K3RA 4KDZA 5GMBA 1V6ZA 3L8UA 4YQAA 5D9FA 4YQQA 3N4KA 4JAKA 4YQ5A 1NS5A 4CNDA 1VHYA 4IG6A 1J85A 2HA8A 4YPZA 5FAIA 1MXIA 3BBHA 1OY5A 4FAKA 3KW2A 4YQ3A 1O6DA 2Z0YA 4JWHA 4YQ7A 1VHKA 4YQPA 4YQRA 4RG1A 4YPWA 4JWFA 4YQ4A 4YQLA 2QWVA 4YQJA 4YQDA 3OIJA 3ILKA 4YVKA 3AI9X 2CX8A 4YVIA 4YQNA 4MCCA 2EGVA 1UAJA 4FMWA 1X7PA 3DCMX 4YQTA 3O7BA 4YQ9A 3BBEA 3NK6A 4YPYA 3NK7A 3KY7A 3AIAA 4JWGA 4X3LA 4J3CA 4MCDA 4YQ2A 3ONPA 3KNUA 1NXZA 3E5YA 1UAMA 1P9PA 3N4JA 4YQSA 1Z85A 4L69A 3OIIA 4YQ1A 1VH0A 3OINA 4YPXA 3QUVA 4JALA 4JWJA 4YQ6A 4KGNA 4YVHA 4XBOA 3IEFA 2V3KA 4E8BA 4YVJA 1ZJRA 1TO0A 4PZKA 2V3JA 2EGWA 4YQBA 4H3ZA 4CNFA 1IPAA 1GZ0A 1V2XA 2I6DA 2YY8A 3KTYA 4H3YA 4X3MA 4YVGA 4YQOA 3IC6A 4CNGA 2QMMA 3AXZA 4YQCA 3GYQA 5GMCA 2O3AA 4CNEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQ8 A;  4MCB A;  4YQ0 A;  1X7O A;  4YQI A;  5CO4 A;  4YQK A;  1UAL A;  1UAK A;  4YQG A;  3BBD A;  5GM8 A;  1K3R A;  4KDZ A;  5GMB A;  1V6Z A;  3L8U A;  4YQA A;  5D9F A;  4YQQ A;  3N4K A;  4JAK A;  4YQ5 A;  1NS5 A;  4CND A;  1VHY A;  4IG6 A;  1J85 A;  2HA8 A;  4YPZ A;  5FAI A;  1MXI A;  3BBH A;  1OY5 A;  4FAK A;  3KW2 A;  4YQ3 A;  1O6D A;  2Z0Y A;  4YQ7 A;  1VHK A;  4YQP A;  4YQR A;  4RG1 A;  4YPW A;  4YQ4 A;  4YQL A;  2QWV A;  4YQJ A;  4YQD A;  3OIJ A;  3ILK A;  4YVK A;  3AI9 X;  2CX8 A;  4YVI A;  4YQN A;  4MCC A;  2EGV A;  1UAJ A;  4YQT A;  1X7P A;  3DCM X;  3O7B A;  4YQ9 A;  3BBE A;  3NK6 A;  4YPY A;  3NK7 A;  3KY7 A;  3AIA A;  4X3L A;  4J3C A;  4MCD A;  4YQ2 A;  3ONP A;  3KNU A;  1NXZ A;  3E5Y A;  1UAM A;  1P9P A;  3N4J A;  4YQS A;  1Z85 A;  4L69 A;  3OII A;  4YQ1 A;  1VH0 A;  3OIN A;  4YPX A;  3QUV A;  4JAL A;  4YQ6 A;  4KGN A;  4YVH A;  4XBO A;  3IEF A;  2V3K A;  4E8B A;  4YVJ A;  1ZJR A;  1TO0 A;  4PZK A;  2V3J A;  2EGW A;  4YQB A;  4H3Z A;  4CNF A;  1IPA A;  1GZ0 A;  1V2X A;  2I6D A;  2YY8 A;  3KTY A;  4H3Y A;  4X3M A;  4YVG A;  4YQO A;  3IC6 A;  4CNG A;  2QMM A;  3AXZ A;  4YQC A;  3GYQ A;  5GMC A;  2O3A A;  4CNE A; 
#chains in the Genus database with same CATH topology
 4YQ8 A;  4MCB A;  4YQ0 A;  1X7O A;  4YQI A;  5CO4 A;  4YQK A;  1UAL A;  1UAK A;  4YQG A;  3BBD A;  5GM8 A;  1K3R A;  4KDZ A;  5GMB A;  1V6Z A;  3L8U A;  4YQA A;  5D9F A;  4YQQ A;  3N4K A;  4JAK A;  4YQ5 A;  1NS5 A;  4CND A;  1VHY A;  4IG6 A;  1J85 A;  2HA8 A;  4YPZ A;  5FAI A;  1MXI A;  3BBH A;  1OY5 A;  4FAK A;  3KW2 A;  4YQ3 A;  1O6D A;  2Z0Y A;  4JWH A;  4YQ7 A;  1VHK A;  4YQP A;  4YQR A;  4RG1 A;  4YPW A;  4JWF A;  4YQ4 A;  4YQL A;  2QWV A;  4YQJ A;  4YQD A;  3OIJ A;  3ILK A;  4YVK A;  3AI9 X;  2CX8 A;  4YVI A;  4YQN A;  4MCC A;  2EGV A;  1UAJ A;  4FMW A;  1X7P A;  3DCM X;  4YQT A;  3O7B A;  4YQ9 A;  3BBE A;  3NK6 A;  4YPY A;  3NK7 A;  3KY7 A;  3AIA A;  4JWG A;  4X3L A;  4J3C A;  4MCD A;  4YQ2 A;  3ONP A;  3KNU A;  1NXZ A;  3E5Y A;  1UAM A;  1P9P A;  3N4J A;  4YQS A;  1Z85 A;  4L69 A;  3OII A;  4YQ1 A;  1VH0 A;  3OIN A;  4YPX A;  3QUV A;  4JAL A;  4JWJ A;  4YQ6 A;  4KGN A;  4YVH A;  4XBO A;  3IEF A;  2V3K A;  4E8B A;  4YVJ A;  1ZJR A;  1TO0 A;  4PZK A;  2V3J A;  2EGW A;  4YQB A;  4H3Z A;  4CNF A;  1IPA A;  1GZ0 A;  1V2X A;  2I6D A;  2YY8 A;  3KTY A;  4H3Y A;  4X3M A;  4YVG A;  4YQO A;  3IC6 A;  4CNG A;  2QMM A;  3AXZ A;  4YQC A;  3GYQ A;  5GMC A;  2O3A A;  4CNE A; 
#chains in the Genus database with same CATH homology
 4YQ8 A;  4MCB A;  4YQ0 A;  1X7O A;  4YQI A;  5CO4 A;  4YQK A;  1UAL A;  1UAK A;  4YQG A;  3BBD A;  5GM8 A;  1K3R A;  4KDZ A;  5GMB A;  1V6Z A;  3L8U A;  4YQA A;  5D9F A;  4YQQ A;  3N4K A;  4JAK A;  4YQ5 A;  1NS5 A;  4CND A;  1VHY A;  4IG6 A;  1J85 A;  2HA8 A;  4YPZ A;  5FAI A;  1MXI A;  3BBH A;  1OY5 A;  4FAK A;  3KW2 A;  4YQ3 A;  1O6D A;  2Z0Y A;  4JWH A;  4YQ7 A;  1VHK A;  4YQP A;  4YQR A;  4RG1 A;  4YPW A;  4JWF A;  4YQ4 A;  4YQL A;  2QWV A;  4YQJ A;  4YQD A;  3OIJ A;  3ILK A;  4YVK A;  3AI9 X;  2CX8 A;  4YVI A;  4YQN A;  4MCC A;  2EGV A;  1UAJ A;  4FMW A;  1X7P A;  3DCM X;  4YQT A;  3O7B A;  4YQ9 A;  3BBE A;  3NK6 A;  4YPY A;  3NK7 A;  3KY7 A;  3AIA A;  4JWG A;  4X3L A;  4J3C A;  4MCD A;  4YQ2 A;  3ONP A;  3KNU A;  1NXZ A;  3E5Y A;  1UAM A;  1P9P A;  3N4J A;  4YQS A;  1Z85 A;  4L69 A;  3OII A;  4YQ1 A;  1VH0 A;  3OIN A;  4YPX A;  3QUV A;  4JAL A;  4JWJ A;  4YQ6 A;  4KGN A;  4YVH A;  4XBO A;  3IEF A;  2V3K A;  4E8B A;  4YVJ A;  1ZJR A;  1TO0 A;  4PZK A;  2V3J A;  2EGW A;  4YQB A;  4H3Z A;  4CNF A;  1IPA A;  1GZ0 A;  1V2X A;  2I6D A;  2YY8 A;  3KTY A;  4H3Y A;  4X3M A;  4YVG A;  4YQO A;  3IC6 A;  4CNG A;  2QMM A;  3AXZ A;  4YQC A;  3GYQ A;  5GMC A;  2O3A A;  4CNE A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...