2V3KA

The yeast ribosome synthesis factor emg1 alpha beta knot fold methyltransferase
Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
Knots found
sequence length
227
structure length
218
Chain Sequence
PQAPPVLTSKDKITKRMIVVLAMASLETHKIYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO1 (86-88)S7 (158-163)S2 (52-53)TI1 (32-35)TVIII1 (25-28)S1 (43-48)TVIII2 (33-36)TIV1 (35-38)S3 (66-67)TIV2 (53-65)TI3 (70-73)TI2 (69-72)AH2 (89-101)AH1 (74-79)3H1 (84-86)TI5 (125-128)S5 (121-124)S4 (112-115)TI4 (116-119)AH4 (134-147)S8 (175-180)S6 (149-151)TIV5 (152-155)TI6 (153-156)AH5 (189-195)TI8 (197-200)AH3 (103-107)3H2 (167-169)TI7 (181-184)S9 (201-208)Updating...
connected with : NaN
publication title The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
pubmed doi rcsb
molecule tags Ribosomal protein
source organism Saccharomyces cerevisiae
molecule keywords ESSENTIAL FOR MITOTIC GROWTH 1
total genus 58
structure length 218
sequence length 227
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1.
pdb deposition date 2007-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2v3kA01
4L69A 3AIAA 5GMCA 3OIIA 4YQ1A 1IPAA 2QMMA 5GM8A 3DCMX 4CNDA 1MXIA 1VHYA 4JAKA 5FAIA 3BBHA 4YQ7A 3IEFA 3NK6A 4YVKA 4MCCA 4YPWA 3IC6A 2V3JA 4XBOA 4YQ5A 4IG6A 4YQBA 4MCDA 4CNEA 2Z0YA 2O3AA 3N4KA 3BBDA 2HA8A 1Z85A 3L8UA 3AI9X 4H3ZA 2I6DA 2YY8A 4YQKA 1UAKA 2QWVA 4YQJA 3BBEA 3OINA 1V2XA 1UALA 3KY7A 3KTYA 1ZJRA 3N4JA 4JALA 2EGVA 4J3CA 4YQGA 4CNGA 4X3LA 1V6ZA 1NS5A 3GYQA 3O7BA 4E8BA 4CNFA 3ONPA 4YQ0A 4KGNA 4X3MA 4YVGA 4YQCA 1OY5A 4YQQA 4RG1A 4YPZA 4YQTA 4YQ3A 3NK7A 1K3RA 4FAKA 4YQ4A 4YQ6A 4YVJA 4PZKA 4YQDA 4YQNA 4KDZA 4YQ8A 1O6DA 1VH0A 3KNUA 1X7PA 3OIJA 5D9FA 4YQLA 5GMBA 4YPYA 3KW2A 1P9PA 4MCBA 5CO4A 1GZ0A 3ILKA 4YQ2A 3QUVA 2CX8A 1X7OA 1NXZA 2EGWA 1TO0A 4YQ9A 4YQAA 4H3YA 2V3KA 1UAMA 4YPXA 3AXZA 4YQIA 4YVHA 1UAJA 3E5YA 1J85A 4YQOA 4YQPA 4YQSA 4YQRA 4YVIA 1VHKA
chains in the Genus database with same CATH superfamily
4L69A 3AIAA 5GMCA 3OIIA 4YQ1A 1IPAA 2QMMA 5GM8A 3DCMX 4CNDA 1MXIA 1VHYA 4JAKA 5FAIA 3BBHA 4YQ7A 3IEFA 3NK6A 4YVKA 4MCCA 4JWGA 4YPWA 3IC6A 2V3JA 4XBOA 4YQ5A 4JWHA 4IG6A 4YQBA 4MCDA 4CNEA 2Z0YA 2O3AA 3N4KA 3BBDA 2HA8A 1Z85A 3L8UA 3AI9X 4H3ZA 2I6DA 2YY8A 4YQKA 1UAKA 2QWVA 4YQJA 3BBEA 3OINA 1V2XA 1UALA 3KY7A 3KTYA 1ZJRA 3N4JA 4JALA 2EGVA 4J3CA 4YQGA 4CNGA 4X3LA 1V6ZA 1NS5A 3GYQA 3O7BA 4E8BA 4CNFA 3ONPA 4YQ0A 4KGNA 4X3MA 4YVGA 4YQCA 1OY5A 4YQQA 4RG1A 4YPZA 4YQTA 4YQ3A 3NK7A 1K3RA 4FAKA 4YQ4A 4YQ6A 4JWJA 4PZKA 4YVJA 4YQDA 4FMWA 4YQNA 4KDZA 4YQ8A 1O6DA 1VH0A 3KNUA 1X7PA 3OIJA 5D9FA 4YQLA 5GMBA 4YPYA 3KW2A 1P9PA 4MCBA 5CO4A 1GZ0A 3ILKA 4YQ2A 3QUVA 2CX8A 1X7OA 1NXZA 2EGWA 1TO0A 4YQ9A 4YQAA 4H3YA 2V3KA 1UAMA 4JWFA 4YPXA 3AXZA 4YQIA 4YVHA 1UAJA 3E5YA 1J85A 4YQOA 4YQPA 4YQSA 4YQRA 4YVIA 1VHKA
chains in the Genus database with same CATH topology
4L69A 3AIAA 5GMCA 3OIIA 4YQ1A 1IPAA 2QMMA 5GM8A 3DCMX 4CNDA 1MXIA 1VHYA 4JAKA 5FAIA 3BBHA 4YQ7A 3IEFA 3NK6A 4YVKA 4MCCA 4JWGA 4YPWA 3IC6A 2V3JA 4XBOA 4YQ5A 4JWHA 4IG6A 4YQBA 4MCDA 4CNEA 2Z0YA 2O3AA 3N4KA 3BBDA 2HA8A 1Z85A 3L8UA 3AI9X 4H3ZA 2I6DA 2YY8A 4YQKA 1UAKA 2QWVA 4YQJA 3BBEA 3OINA 1V2XA 1UALA 3KY7A 3KTYA 1ZJRA 3N4JA 4JALA 2EGVA 4J3CA 4YQGA 4CNGA 4X3LA 1V6ZA 1NS5A 3GYQA 3O7BA 4E8BA 4CNFA 3ONPA 4YQ0A 4KGNA 4X3MA 4YVGA 4YQCA 1OY5A 4YQQA 4RG1A 4YPZA 4YQTA 4YQ3A 3NK7A 1K3RA 4FAKA 4YQ4A 4YQ6A 4JWJA 4PZKA 4YVJA 4YQDA 4FMWA 4YQNA 4KDZA 4YQ8A 1O6DA 1VH0A 3KNUA 1X7PA 3OIJA 5D9FA 4YQLA 5GMBA 4YPYA 3KW2A 1P9PA 4MCBA 5CO4A 1GZ0A 3ILKA 4YQ2A 3QUVA 2CX8A 1X7OA 1NXZA 2EGWA 1TO0A 4YQ9A 4YQAA 4H3YA 2V3KA 1UAMA 4JWFA 4YPXA 3AXZA 4YQIA 4YVHA 1UAJA 3E5YA 1J85A 4YQOA 4YQPA 4YQSA 4YQRA 4YVIA 1VHKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L69 A;  3AIA A;  5GMC A;  3OII A;  4YQ1 A;  1IPA A;  2QMM A;  5GM8 A;  3DCM X;  4CND A;  1MXI A;  1VHY A;  4JAK A;  5FAI A;  3BBH A;  4YQ7 A;  3IEF A;  3NK6 A;  4YVK A;  4MCC A;  4YPW A;  3IC6 A;  2V3J A;  4XBO A;  4YQ5 A;  4IG6 A;  4YQB A;  4MCD A;  4CNE A;  2Z0Y A;  2O3A A;  3N4K A;  3BBD A;  2HA8 A;  1Z85 A;  3L8U A;  3AI9 X;  4H3Z A;  2I6D A;  2YY8 A;  4YQK A;  1UAK A;  2QWV A;  4YQJ A;  3BBE A;  3OIN A;  1V2X A;  1UAL A;  3KY7 A;  3KTY A;  1ZJR A;  3N4J A;  4JAL A;  2EGV A;  4J3C A;  4YQG A;  4CNG A;  4X3L A;  1V6Z A;  1NS5 A;  3GYQ A;  3O7B A;  4E8B A;  4CNF A;  3ONP A;  4YQ0 A;  4KGN A;  4X3M A;  4YVG A;  4YQC A;  1OY5 A;  4YQQ A;  4RG1 A;  4YPZ A;  4YQT A;  4YQ3 A;  3NK7 A;  1K3R A;  4FAK A;  4YQ4 A;  4YQ6 A;  4YVJ A;  4PZK A;  4YQD A;  4YQN A;  4KDZ A;  4YQ8 A;  1O6D A;  1VH0 A;  3KNU A;  1X7P A;  3OIJ A;  5D9F A;  4YQL A;  5GMB A;  4YPY A;  3KW2 A;  1P9P A;  4MCB A;  5CO4 A;  1GZ0 A;  3ILK A;  4YQ2 A;  3QUV A;  2CX8 A;  1X7O A;  1NXZ A;  2EGW A;  1TO0 A;  4YQ9 A;  4YQA A;  4H3Y A;  2V3K A;  1UAM A;  4YPX A;  3AXZ A;  4YQI A;  4YVH A;  1UAJ A;  3E5Y A;  1J85 A;  4YQO A;  4YQP A;  4YQS A;  4YQR A;  4YVI A;  1VHK A; 
#chains in the Genus database with same CATH topology
 4L69 A;  3AIA A;  5GMC A;  3OII A;  4YQ1 A;  1IPA A;  2QMM A;  5GM8 A;  3DCM X;  4CND A;  1MXI A;  1VHY A;  4JAK A;  5FAI A;  3BBH A;  4YQ7 A;  3IEF A;  3NK6 A;  4YVK A;  4MCC A;  4JWG A;  4YPW A;  3IC6 A;  2V3J A;  4XBO A;  4YQ5 A;  4JWH A;  4IG6 A;  4YQB A;  4MCD A;  4CNE A;  2Z0Y A;  2O3A A;  3N4K A;  3BBD A;  2HA8 A;  1Z85 A;  3L8U A;  3AI9 X;  4H3Z A;  2I6D A;  2YY8 A;  4YQK A;  1UAK A;  2QWV A;  4YQJ A;  3BBE A;  3OIN A;  1V2X A;  1UAL A;  3KY7 A;  3KTY A;  1ZJR A;  3N4J A;  4JAL A;  2EGV A;  4J3C A;  4YQG A;  4CNG A;  4X3L A;  1V6Z A;  1NS5 A;  3GYQ A;  3O7B A;  4E8B A;  4CNF A;  3ONP A;  4YQ0 A;  4KGN A;  4X3M A;  4YVG A;  4YQC A;  1OY5 A;  4YQQ A;  4RG1 A;  4YPZ A;  4YQT A;  4YQ3 A;  3NK7 A;  1K3R A;  4FAK A;  4YQ4 A;  4YQ6 A;  4JWJ A;  4PZK A;  4YVJ A;  4YQD A;  4FMW A;  4YQN A;  4KDZ A;  4YQ8 A;  1O6D A;  1VH0 A;  3KNU A;  1X7P A;  3OIJ A;  5D9F A;  4YQL A;  5GMB A;  4YPY A;  3KW2 A;  1P9P A;  4MCB A;  5CO4 A;  1GZ0 A;  3ILK A;  4YQ2 A;  3QUV A;  2CX8 A;  1X7O A;  1NXZ A;  2EGW A;  1TO0 A;  4YQ9 A;  4YQA A;  4H3Y A;  2V3K A;  1UAM A;  4JWF A;  4YPX A;  3AXZ A;  4YQI A;  4YVH A;  1UAJ A;  3E5Y A;  1J85 A;  4YQO A;  4YQP A;  4YQS A;  4YQR A;  4YVI A;  1VHK A; 
#chains in the Genus database with same CATH homology
 4L69 A;  3AIA A;  5GMC A;  3OII A;  4YQ1 A;  1IPA A;  2QMM A;  5GM8 A;  3DCM X;  4CND A;  1MXI A;  1VHY A;  4JAK A;  5FAI A;  3BBH A;  4YQ7 A;  3IEF A;  3NK6 A;  4YVK A;  4MCC A;  4JWG A;  4YPW A;  3IC6 A;  2V3J A;  4XBO A;  4YQ5 A;  4JWH A;  4IG6 A;  4YQB A;  4MCD A;  4CNE A;  2Z0Y A;  2O3A A;  3N4K A;  3BBD A;  2HA8 A;  1Z85 A;  3L8U A;  3AI9 X;  4H3Z A;  2I6D A;  2YY8 A;  4YQK A;  1UAK A;  2QWV A;  4YQJ A;  3BBE A;  3OIN A;  1V2X A;  1UAL A;  3KY7 A;  3KTY A;  1ZJR A;  3N4J A;  4JAL A;  2EGV A;  4J3C A;  4YQG A;  4CNG A;  4X3L A;  1V6Z A;  1NS5 A;  3GYQ A;  3O7B A;  4E8B A;  4CNF A;  3ONP A;  4YQ0 A;  4KGN A;  4X3M A;  4YVG A;  4YQC A;  1OY5 A;  4YQQ A;  4RG1 A;  4YPZ A;  4YQT A;  4YQ3 A;  3NK7 A;  1K3R A;  4FAK A;  4YQ4 A;  4YQ6 A;  4JWJ A;  4PZK A;  4YVJ A;  4YQD A;  4FMW A;  4YQN A;  4KDZ A;  4YQ8 A;  1O6D A;  1VH0 A;  3KNU A;  1X7P A;  3OIJ A;  5D9F A;  4YQL A;  5GMB A;  4YPY A;  3KW2 A;  1P9P A;  4MCB A;  5CO4 A;  1GZ0 A;  3ILK A;  4YQ2 A;  3QUV A;  2CX8 A;  1X7O A;  1NXZ A;  2EGW A;  1TO0 A;  4YQ9 A;  4YQA A;  4H3Y A;  2V3K A;  1UAM A;  4JWF A;  4YPX A;  3AXZ A;  4YQI A;  4YVH A;  1UAJ A;  3E5Y A;  1J85 A;  4YQO A;  4YQP A;  4YQS A;  4YQR A;  4YVI A;  1VHK A; 
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