The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
69
|
Knots found |
|
sequence length |
204
|
structure length |
204
|
Chain Sequence |
TYNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHPKLLKEYDTFIIGGFPYGKLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Methanocaldococcus jannaschii
|
| molecule keywords |
Ribosome biogenesis protein NEP1-like
|
| total genus |
69
|
| structure length |
204
|
| sequence length |
204
|
| chains with identical sequence |
B
|
| other databases |
 KnotProt 2.0: K +31
|
| ec nomenclature | |
| pdb deposition date | 2007-11-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03587 | EMG1 | EMG1/NEP1 methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the Genus database with same CATH superfamily 3BBD A; 4YQ4 A; 3OII A; 4YPX A; 2EGV A; 1VHY A; 1GZ0 A; 3IEF A; 1TO0 A; 3BBE A; 3KW2 A; 4CNE A; 4YQ2 A; 1VHK A; 1V6Z A; 1ZJR A; 2YY8 A; 4MCB A; 4E8B A; 4KGN A; 3N4K A; 3BBH A; 4YQK A; 4YQQ A; 3N4J A; 1VH0 A; 2V3K A; 4J3C A; 2EGW A; 4XBO A; 3AXZ A; 3ILK A; 2I6D A; 4YQ0 A; 2Z0Y A; 4YPW A; 1K3R A; 4YQG A; 4YQT A; 1X7O A; 2HA8 A; 4RG1 A; 4MCC A; 4YQC A; 4YQI A; 4JAL A; 1V2X A; 4CND A; 4YVK A; 3KY7 A; 4YQB A; 1NXZ A; 1UAM A; 4YQD A; 3DCM X; 1OY5 A; 3KTY A; 5GMC A; 5GM8 A; 4YVG A; 4YQN A; 3KNU A; 5CO4 A; 4CNF A; 4KDZ A; 2QWV A; 4YQP A; 1UAK A; 4YPZ A; 4YQA A; 4L69 A; 4YPY A; 4YQ9 A; 4YVH A; 3L8U A; 3AIA A; 4CNG A; 4YQ3 A; 3OIJ A; 4H3Z A; 1IPA A; 2QMM A; 4YQJ A; 3NK7 A; 4X3M A; 4YVJ A; 2O3A A; 4H3Y A; 3E5Y A; 3ONP A; 4MCD A; 3NK6 A; 4YQ5 A; 2V3J A; 4IG6 A; 4X3L A; 1Z85 A; 4YQ1 A; 4YQR A; 4YQ7 A; 1O6D A; 4YQL A; 2CX8 A; 3OIN A; 4YQO A; 4YQ6 A; 4YVI A; 1MXI A; 1J85 A; 3IC6 A; 3O7B A; 1P9P A; 3AI9 X; 4JAK A; 3GYQ A; 5GMB A; 4FAK A; 1X7P A; 4YQ8 A; 4YQS A; 5FAI A; 3QUV A; 1UAL A; 5D9F A; 4PZK A; 1NS5 A; 1UAJ A; #chains in the Genus database with same CATH topology 3BBD A; 4YQ4 A; 3OII A; 4YPX A; 2EGV A; 4JWG A; 1VHY A; 1GZ0 A; 3IEF A; 1TO0 A; 3BBE A; 3KW2 A; 4CNE A; 4YQ2 A; 1VHK A; 1V6Z A; 1ZJR A; 2YY8 A; 4MCB A; 4E8B A; 4KGN A; 3N4K A; 3BBH A; 4YQK A; 4YQQ A; 3N4J A; 1VH0 A; 2V3K A; 4J3C A; 2EGW A; 4XBO A; 3AXZ A; 3ILK A; 2I6D A; 4YQ0 A; 2Z0Y A; 4YPW A; 1K3R A; 4YQG A; 4YQT A; 1X7O A; 2HA8 A; 4RG1 A; 4MCC A; 4YQC A; 4YQI A; 4JAL A; 1V2X A; 4CND A; 4YVK A; 3KY7 A; 4YQB A; 1NXZ A; 1UAM A; 4YQD A; 3DCM X; 1OY5 A; 3KTY A; 5GMC A; 5GM8 A; 4YVG A; 4YQN A; 3KNU A; 5CO4 A; 4CNF A; 4KDZ A; 2QWV A; 4YQP A; 1UAK A; 4YPZ A; 4YQA A; 4JWH A; 4L69 A; 4YPY A; 4YQ9 A; 4YVH A; 3L8U A; 3AIA A; 4CNG A; 4YQ3 A; 3OIJ A; 4H3Z A; 1IPA A; 2QMM A; 4YQJ A; 3NK7 A; 4X3M A; 4YVJ A; 2O3A A; 4H3Y A; 4FMW A; 3E5Y A; 3ONP A; 4MCD A; 3NK6 A; 4YQ5 A; 2V3J A; 4IG6 A; 4X3L A; 1Z85 A; 4YQ1 A; 4YQR A; 4YQ7 A; 1O6D A; 4YQL A; 2CX8 A; 3OIN A; 4YQO A; 4YQ6 A; 4YVI A; 1MXI A; 1J85 A; 3IC6 A; 3O7B A; 4JWJ A; 1P9P A; 4JWF A; 3AI9 X; 4JAK A; 3GYQ A; 5GMB A; 4FAK A; 1X7P A; 4YQ8 A; 4YQS A; 5FAI A; 3QUV A; 1UAL A; 5D9F A; 4PZK A; 1NS5 A; 1UAJ A; #chains in the Genus database with same CATH homology 3BBD A; 4YQ4 A; 3OII A; 4YPX A; 2EGV A; 4JWG A; 1VHY A; 1GZ0 A; 3IEF A; 1TO0 A; 3BBE A; 3KW2 A; 4CNE A; 4YQ2 A; 1VHK A; 1V6Z A; 1ZJR A; 2YY8 A; 4MCB A; 4E8B A; 4KGN A; 3N4K A; 3BBH A; 4YQK A; 4YQQ A; 3N4J A; 1VH0 A; 2V3K A; 4J3C A; 2EGW A; 4XBO A; 3AXZ A; 3ILK A; 2I6D A; 4YQ0 A; 2Z0Y A; 4YPW A; 1K3R A; 4YQG A; 4YQT A; 1X7O A; 2HA8 A; 4RG1 A; 4MCC A; 4YQC A; 4YQI A; 4JAL A; 1V2X A; 4CND A; 4YVK A; 3KY7 A; 4YQB A; 1NXZ A; 1UAM A; 4YQD A; 3DCM X; 1OY5 A; 3KTY A; 5GMC A; 5GM8 A; 4YVG A; 4YQN A; 3KNU A; 5CO4 A; 4CNF A; 4KDZ A; 2QWV A; 4YQP A; 1UAK A; 4YPZ A; 4YQA A; 4JWH A; 4L69 A; 4YPY A; 4YQ9 A; 4YVH A; 3L8U A; 3AIA A; 4CNG A; 4YQ3 A; 3OIJ A; 4H3Z A; 1IPA A; 2QMM A; 4YQJ A; 3NK7 A; 4X3M A; 4YVJ A; 2O3A A; 4H3Y A; 4FMW A; 3E5Y A; 3ONP A; 4MCD A; 3NK6 A; 4YQ5 A; 2V3J A; 4IG6 A; 4X3L A; 1Z85 A; 4YQ1 A; 4YQR A; 4YQ7 A; 1O6D A; 4YQL A; 2CX8 A; 3OIN A; 4YQO A; 4YQ6 A; 4YVI A; 1MXI A; 1J85 A; 3IC6 A; 3O7B A; 4JWJ A; 1P9P A; 4JWF A; 3AI9 X; 4JAK A; 3GYQ A; 5GMB A; 4FAK A; 1X7P A; 4YQ8 A; 4YQS A; 5FAI A; 3QUV A; 1UAL A; 5D9F A; 4PZK A; 1NS5 A; 1UAJ A;
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