3KTYA

Crystal structure of probable methyltransferase from bordetella pertussis tohama i
Total Genus 48
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
Knots found
sequence length
173
structure length
167
Chain Sequence
SNAMTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVTLAFALTTRPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal Structure of Probable Methyltransferase SpoU from Bordetella pertussis Tohama I
rcsb
molecule tags Transferase
source organism Bordetella pertussis
molecule keywords Probable methyltransferase
total genus 48
structure length 167
sequence length 173
chains with identical sequence B, C
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2009-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3ktyA01
4XBOA 1J85A 2EGVA 1UAKA 3DCMX 3KY7A 4YQ8A 2QWVA 1VHKA 4MCCA 2Z0YA 4YQSA 4CNDA 3BBEA 4H3ZA 3BBDA 1UALA 4YVJA 4YQKA 5GM8A 2EGWA 4KGNA 3QUVA 4MCBA 4YVGA 4H3YA 1P9PA 1NS5A 2V3KA 4CNFA 3OIJA 3KNUA 4X3MA 3KTYA 4YQQA 4J3CA 3OINA 4YQ1A 4YPYA 1ZJRA 4YVKA 3O7BA 2QMMA 4YQ4A 3NK7A 1V2XA 1Z85A 1VHYA 4CNEA 3L8UA 4E8BA 1V6ZA 2HA8A 4YVIA 1UAJA 5GMCA 1OY5A 3OIIA 4YQ6A 4FAKA 1K3RA 3E5YA 4YQLA 1UAMA 4YPWA 4YPXA 4YPZA 1TO0A 2I6DA 4PZKA 4YQRA 4YQNA 3GYQA 4YQ2A 4X3LA 4YQBA 3AXZA 1X7OA 4YQPA 4JAKA 4YQCA 1O6DA 3IEFA 4YQ9A 3AIAA 4YQAA 4YQIA 1X7PA 4YQJA 4YQGA 5CO4A 4YQOA 3NK6A 4MCDA 4YVHA 4IG6A 3AI9X 4YQ5A 4YQTA 3IC6A 4YQ3A 1NXZA 2CX8A 1VH0A 5GMBA 3BBHA 4KDZA 4YQ0A 1MXIA 2V3JA 1GZ0A 4L69A 5D9FA 4YQ7A 3N4JA 4RG1A 1IPAA 3KW2A 3ONPA 5FAIA 3ILKA 2O3AA 3N4KA 4CNGA 2YY8A 4YQDA 4JALA
chains in the Genus database with same CATH superfamily
4XBOA 1J85A 2EGVA 1UAKA 3DCMX 3KY7A 4FMWA 4YQ8A 2QWVA 1VHKA 4MCCA 2Z0YA 4YQSA 4CNDA 3BBEA 4H3ZA 3BBDA 1UALA 4YVJA 4YQKA 5GM8A 2EGWA 4KGNA 3QUVA 4MCBA 4YVGA 4H3YA 1P9PA 1NS5A 2V3KA 4CNFA 3OIJA 3KNUA 4JWGA 3KTYA 4X3MA 4YQQA 4J3CA 4JWJA 3OINA 4YQ1A 4YPYA 1ZJRA 4YVKA 3O7BA 2QMMA 4YQ4A 3NK7A 1V2XA 1Z85A 1VHYA 4CNEA 3L8UA 4E8BA 1V6ZA 2HA8A 4YVIA 1UAJA 5GMCA 1OY5A 3OIIA 4YQ6A 4JWFA 4FAKA 1K3RA 3E5YA 4YQLA 1UAMA 4YPWA 4YPXA 4YPZA 1TO0A 2I6DA 4PZKA 4YQRA 4YQNA 3GYQA 4YQ2A 4X3LA 4YQBA 3AXZA 1X7OA 4YQPA 4JAKA 4YQCA 1O6DA 3IEFA 4YQ9A 3AIAA 4YQAA 4YQIA 1X7PA 4JWHA 4YQJA 4YQGA 5CO4A 4YQOA 3NK6A 4MCDA 4YVHA 4IG6A 3AI9X 4YQ5A 4YQTA 3IC6A 4YQ3A 1NXZA 2CX8A 1VH0A 5GMBA 3BBHA 4KDZA 4YQ0A 1MXIA 2V3JA 1GZ0A 4L69A 5D9FA 4YQ7A 3N4JA 4RG1A 1IPAA 3KW2A 3ONPA 5FAIA 3ILKA 2O3AA 3N4KA 4CNGA 2YY8A 4YQDA 4JALA
chains in the Genus database with same CATH topology
4XBOA 1J85A 2EGVA 1UAKA 3DCMX 3KY7A 4FMWA 4YQ8A 2QWVA 1VHKA 4MCCA 2Z0YA 4YQSA 4CNDA 3BBEA 4H3ZA 3BBDA 1UALA 4YVJA 4YQKA 5GM8A 2EGWA 4KGNA 3QUVA 4MCBA 4YVGA 4H3YA 1P9PA 1NS5A 2V3KA 4CNFA 3OIJA 3KNUA 4JWGA 3KTYA 4X3MA 4YQQA 4J3CA 4JWJA 3OINA 4YQ1A 4YPYA 1ZJRA 4YVKA 3O7BA 2QMMA 4YQ4A 3NK7A 1V2XA 1Z85A 1VHYA 4CNEA 3L8UA 4E8BA 1V6ZA 2HA8A 4YVIA 1UAJA 5GMCA 1OY5A 3OIIA 4YQ6A 4JWFA 4FAKA 1K3RA 3E5YA 4YQLA 1UAMA 4YPWA 4YPXA 4YPZA 1TO0A 2I6DA 4PZKA 4YQRA 4YQNA 3GYQA 4YQ2A 4X3LA 4YQBA 3AXZA 1X7OA 4YQPA 4JAKA 4YQCA 1O6DA 3IEFA 4YQ9A 3AIAA 4YQAA 4YQIA 1X7PA 4JWHA 4YQJA 4YQGA 5CO4A 4YQOA 3NK6A 4MCDA 4YVHA 4IG6A 3AI9X 4YQ5A 4YQTA 3IC6A 4YQ3A 1NXZA 2CX8A 1VH0A 5GMBA 3BBHA 4KDZA 4YQ0A 1MXIA 2V3JA 1GZ0A 4L69A 5D9FA 4YQ7A 3N4JA 4RG1A 1IPAA 3KW2A 3ONPA 5FAIA 3ILKA 2O3AA 3N4KA 4CNGA 2YY8A 4YQDA 4JALA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XBO A;  1J85 A;  2EGV A;  1UAK A;  3DCM X;  3KY7 A;  4YQ8 A;  2QWV A;  1VHK A;  4MCC A;  2Z0Y A;  4YQS A;  4CND A;  3BBE A;  4H3Z A;  3BBD A;  1UAL A;  4YVJ A;  4YQK A;  5GM8 A;  2EGW A;  4KGN A;  3QUV A;  4MCB A;  4YVG A;  4H3Y A;  1P9P A;  1NS5 A;  2V3K A;  4CNF A;  3OIJ A;  3KNU A;  4X3M A;  3KTY A;  4YQQ A;  4J3C A;  3OIN A;  4YQ1 A;  4YPY A;  1ZJR A;  4YVK A;  3O7B A;  2QMM A;  4YQ4 A;  3NK7 A;  1V2X A;  1Z85 A;  1VHY A;  4CNE A;  3L8U A;  4E8B A;  1V6Z A;  2HA8 A;  4YVI A;  1UAJ A;  5GMC A;  1OY5 A;  3OII A;  4YQ6 A;  4FAK A;  1K3R A;  3E5Y A;  4YQL A;  1UAM A;  4YPW A;  4YPX A;  4YPZ A;  1TO0 A;  2I6D A;  4PZK A;  4YQR A;  4YQN A;  3GYQ A;  4YQ2 A;  4X3L A;  4YQB A;  3AXZ A;  1X7O A;  4YQP A;  4JAK A;  4YQC A;  1O6D A;  3IEF A;  4YQ9 A;  3AIA A;  4YQA A;  4YQI A;  1X7P A;  4YQJ A;  4YQG A;  5CO4 A;  4YQO A;  3NK6 A;  4MCD A;  4YVH A;  4IG6 A;  3AI9 X;  4YQ5 A;  4YQT A;  3IC6 A;  4YQ3 A;  1NXZ A;  2CX8 A;  1VH0 A;  5GMB A;  3BBH A;  4KDZ A;  4YQ0 A;  1MXI A;  2V3J A;  1GZ0 A;  4L69 A;  5D9F A;  4YQ7 A;  3N4J A;  4RG1 A;  1IPA A;  3KW2 A;  3ONP A;  5FAI A;  3ILK A;  2O3A A;  3N4K A;  4CNG A;  2YY8 A;  4YQD A;  4JAL A; 
#chains in the Genus database with same CATH topology
 4XBO A;  1J85 A;  2EGV A;  1UAK A;  3DCM X;  3KY7 A;  4FMW A;  4YQ8 A;  2QWV A;  1VHK A;  4MCC A;  2Z0Y A;  4YQS A;  4CND A;  3BBE A;  4H3Z A;  3BBD A;  1UAL A;  4YVJ A;  4YQK A;  5GM8 A;  2EGW A;  4KGN A;  3QUV A;  4MCB A;  4YVG A;  4H3Y A;  1P9P A;  1NS5 A;  2V3K A;  4CNF A;  3OIJ A;  3KNU A;  4JWG A;  3KTY A;  4X3M A;  4YQQ A;  4J3C A;  4JWJ A;  3OIN A;  4YQ1 A;  4YPY A;  1ZJR A;  4YVK A;  3O7B A;  2QMM A;  4YQ4 A;  3NK7 A;  1V2X A;  1Z85 A;  1VHY A;  4CNE A;  3L8U A;  4E8B A;  1V6Z A;  2HA8 A;  4YVI A;  1UAJ A;  5GMC A;  1OY5 A;  3OII A;  4YQ6 A;  4JWF A;  4FAK A;  1K3R A;  3E5Y A;  4YQL A;  1UAM A;  4YPW A;  4YPX A;  4YPZ A;  1TO0 A;  2I6D A;  4PZK A;  4YQR A;  4YQN A;  3GYQ A;  4YQ2 A;  4X3L A;  4YQB A;  3AXZ A;  1X7O A;  4YQP A;  4JAK A;  4YQC A;  1O6D A;  3IEF A;  4YQ9 A;  3AIA A;  4YQA A;  4YQI A;  1X7P A;  4JWH A;  4YQJ A;  4YQG A;  5CO4 A;  4YQO A;  3NK6 A;  4MCD A;  4YVH A;  4IG6 A;  3AI9 X;  4YQ5 A;  4YQT A;  3IC6 A;  4YQ3 A;  1NXZ A;  2CX8 A;  1VH0 A;  5GMB A;  3BBH A;  4KDZ A;  4YQ0 A;  1MXI A;  2V3J A;  1GZ0 A;  4L69 A;  5D9F A;  4YQ7 A;  3N4J A;  4RG1 A;  1IPA A;  3KW2 A;  3ONP A;  5FAI A;  3ILK A;  2O3A A;  3N4K A;  4CNG A;  2YY8 A;  4YQD A;  4JAL A; 
#chains in the Genus database with same CATH homology
 4XBO A;  1J85 A;  2EGV A;  1UAK A;  3DCM X;  3KY7 A;  4FMW A;  4YQ8 A;  2QWV A;  1VHK A;  4MCC A;  2Z0Y A;  4YQS A;  4CND A;  3BBE A;  4H3Z A;  3BBD A;  1UAL A;  4YVJ A;  4YQK A;  5GM8 A;  2EGW A;  4KGN A;  3QUV A;  4MCB A;  4YVG A;  4H3Y A;  1P9P A;  1NS5 A;  2V3K A;  4CNF A;  3OIJ A;  3KNU A;  4JWG A;  3KTY A;  4X3M A;  4YQQ A;  4J3C A;  4JWJ A;  3OIN A;  4YQ1 A;  4YPY A;  1ZJR A;  4YVK A;  3O7B A;  2QMM A;  4YQ4 A;  3NK7 A;  1V2X A;  1Z85 A;  1VHY A;  4CNE A;  3L8U A;  4E8B A;  1V6Z A;  2HA8 A;  4YVI A;  1UAJ A;  5GMC A;  1OY5 A;  3OII A;  4YQ6 A;  4JWF A;  4FAK A;  1K3R A;  3E5Y A;  4YQL A;  1UAM A;  4YPW A;  4YPX A;  4YPZ A;  1TO0 A;  2I6D A;  4PZK A;  4YQR A;  4YQN A;  3GYQ A;  4YQ2 A;  4X3L A;  4YQB A;  3AXZ A;  1X7O A;  4YQP A;  4JAK A;  4YQC A;  1O6D A;  3IEF A;  4YQ9 A;  3AIA A;  4YQA A;  4YQI A;  1X7P A;  4JWH A;  4YQJ A;  4YQG A;  5CO4 A;  4YQO A;  3NK6 A;  4MCD A;  4YVH A;  4IG6 A;  3AI9 X;  4YQ5 A;  4YQT A;  3IC6 A;  4YQ3 A;  1NXZ A;  2CX8 A;  1VH0 A;  5GMB A;  3BBH A;  4KDZ A;  4YQ0 A;  1MXI A;  2V3J A;  1GZ0 A;  4L69 A;  5D9F A;  4YQ7 A;  3N4J A;  4RG1 A;  1IPA A;  3KW2 A;  3ONP A;  5FAI A;  3ILK A;  2O3A A;  3N4K A;  4CNG A;  2YY8 A;  4YQD A;  4JAL A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...