3IC6A

Crystal structure of putative methylase family protein from neisseria gonorrhoeae
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
Knots found
sequence length
217
structure length
213
Chain Sequence
LKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRRTAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQTDSPMTHLQQHAATHEQIKGMLAHMESV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Putative methylase family protein
publication title Crystal structure of putative methylase family protein from Neisseria gonorrhoeae
rcsb
source organism Neisseria gonorrhoeae fa 1090
total genus 55
structure length 213
sequence length 217
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2009-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3ic6A01
1UAMA 4CNDA 1O6DA 4JAKA 4KGNA 1X7OA 3N4JA 1UAKA 4YQKA 1J85A 1VHKA 1V2XA 5D9FA 4YVHA 4FAKA 3O7BA 4JALA 4YQ9A 4YQ7A 3NK7A 5CO4A 1VHYA 2QMMA 1MXIA 4YPWA 1NS5A 4YQ0A 4XBOA 2V3JA 3KTYA 4YQTA 3ILKA 2CX8A 4YQBA 3AIAA 4CNGA 3N4KA 2Z0YA 4YQ1A 2EGWA 4YPXA 3BBEA 4IG6A 3L8UA 2EGVA 1VH0A 4X3MA 4YQOA 2O3AA 4KDZA 4YQQA 4YQNA 4YQRA 4YQ3A 3OINA 3OIIA 3IEFA 4MCCA 1TO0A 4YVJA 4YVGA 4E8BA 1Z85A 1K3RA 2V3KA 5GMBA 4YQSA 4MCDA 3IC6A 4YQLA 4YVKA 4YQPA 4MCBA 1ZJRA 3ONPA 4YQ8A 4H3ZA 4YPYA 3KY7A 4YVIA 3E5YA 4YQ4A 3OIJA 1V6ZA 3BBHA 3GYQA 4YQ5A 4YQ6A 3KNUA 4YQ2A 1GZ0A 2HA8A 4YQIA 1P9PA 4YPZA 4CNFA 4YQDA 2YY8A 3AI9X 4L69A 3KW2A 4J3CA 4RG1A 1UAJA 3DCMX 3AXZA 1NXZA 4YQGA 5FAIA 1IPAA 5GMCA 4H3YA 1UALA 2I6DA 4PZKA 4YQCA 3BBDA 3NK6A 5GM8A 3QUVA 4X3LA 2QWVA 4CNEA 4YQJA 1OY5A 1X7PA 4YQAA
chains in the Genus database with same CATH superfamily
1UAMA 4CNDA 1O6DA 4JAKA 4KGNA 1X7OA 3N4JA 1UAKA 4YQKA 1J85A 1VHKA 1V2XA 5D9FA 4YVHA 4FAKA 3O7BA 4JALA 4YQ9A 4YQ7A 3NK7A 5CO4A 1VHYA 4JWGA 2QMMA 1MXIA 4FMWA 4YPWA 1NS5A 4YQ0A 4XBOA 2V3JA 3KTYA 4YQTA 3ILKA 2CX8A 4YQBA 3AIAA 4CNGA 3N4KA 2Z0YA 4YQ1A 2EGWA 4YPXA 3BBEA 4IG6A 3L8UA 2EGVA 1VH0A 4X3MA 4YQOA 2O3AA 4KDZA 4YQQA 4YQNA 4YQRA 4YQ3A 3OINA 3OIIA 3IEFA 4MCCA 1TO0A 4YVJA 4YVGA 4E8BA 1Z85A 1K3RA 2V3KA 5GMBA 4JWJA 4MCDA 4YQSA 4JWHA 3IC6A 4YQLA 4YVKA 4YQPA 4MCBA 1ZJRA 3ONPA 4YQ8A 4H3ZA 4YPYA 3KY7A 4YVIA 3E5YA 4YQ4A 3OIJA 1V6ZA 3BBHA 3GYQA 4YQ5A 4YQ6A 3KNUA 4YQ2A 1GZ0A 2HA8A 4YQIA 1P9PA 4YPZA 4CNFA 4YQDA 2YY8A 3AI9X 4L69A 3KW2A 4J3CA 4RG1A 1UAJA 3DCMX 3AXZA 1NXZA 4YQGA 5FAIA 1IPAA 5GMCA 4H3YA 1UALA 2I6DA 4PZKA 4YQCA 3BBDA 3NK6A 5GM8A 3QUVA 4X3LA 2QWVA 4CNEA 4YQJA 4JWFA 1OY5A 1X7PA 4YQAA
chains in the Genus database with same CATH topology
1UAMA 4CNDA 1O6DA 4JAKA 4KGNA 1X7OA 3N4JA 1UAKA 4YQKA 1J85A 1VHKA 1V2XA 5D9FA 4YVHA 4FAKA 3O7BA 4JALA 4YQ9A 4YQ7A 3NK7A 5CO4A 1VHYA 4JWGA 2QMMA 1MXIA 4FMWA 4YPWA 1NS5A 4YQ0A 4XBOA 2V3JA 3KTYA 4YQTA 3ILKA 2CX8A 4YQBA 3AIAA 4CNGA 3N4KA 2Z0YA 4YQ1A 2EGWA 4YPXA 3BBEA 4IG6A 3L8UA 2EGVA 1VH0A 4X3MA 4YQOA 2O3AA 4KDZA 4YQQA 4YQNA 4YQRA 4YQ3A 3OINA 3OIIA 3IEFA 4MCCA 1TO0A 4YVJA 4YVGA 4E8BA 1Z85A 1K3RA 2V3KA 5GMBA 4JWJA 4MCDA 4YQSA 4JWHA 3IC6A 4YQLA 4YVKA 4YQPA 4MCBA 1ZJRA 3ONPA 4YQ8A 4H3ZA 4YPYA 3KY7A 4YVIA 3E5YA 4YQ4A 3OIJA 1V6ZA 3BBHA 3GYQA 4YQ5A 4YQ6A 3KNUA 4YQ2A 1GZ0A 2HA8A 4YQIA 1P9PA 4YPZA 4CNFA 4YQDA 2YY8A 3AI9X 4L69A 3KW2A 4J3CA 4RG1A 1UAJA 3DCMX 3AXZA 1NXZA 4YQGA 5FAIA 1IPAA 5GMCA 4H3YA 1UALA 2I6DA 4PZKA 4YQCA 3BBDA 3NK6A 5GM8A 3QUVA 4X3LA 2QWVA 4CNEA 4YQJA 4JWFA 1OY5A 1X7PA 4YQAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UAM A;  4CND A;  1O6D A;  4JAK A;  4KGN A;  1X7O A;  3N4J A;  1UAK A;  4YQK A;  1J85 A;  1VHK A;  1V2X A;  5D9F A;  4YVH A;  4FAK A;  3O7B A;  4JAL A;  4YQ9 A;  4YQ7 A;  3NK7 A;  5CO4 A;  1VHY A;  2QMM A;  1MXI A;  4YPW A;  1NS5 A;  4YQ0 A;  4XBO A;  2V3J A;  3KTY A;  4YQT A;  3ILK A;  2CX8 A;  4YQB A;  3AIA A;  4CNG A;  3N4K A;  2Z0Y A;  4YQ1 A;  2EGW A;  4YPX A;  3BBE A;  4IG6 A;  3L8U A;  2EGV A;  1VH0 A;  4X3M A;  4YQO A;  2O3A A;  4KDZ A;  4YQQ A;  4YQN A;  4YQR A;  4YQ3 A;  3OIN A;  3OII A;  3IEF A;  4MCC A;  1TO0 A;  4YVJ A;  4YVG A;  4E8B A;  1Z85 A;  1K3R A;  2V3K A;  5GMB A;  4YQS A;  4MCD A;  3IC6 A;  4YQL A;  4YVK A;  4YQP A;  4MCB A;  1ZJR A;  3ONP A;  4YQ8 A;  4H3Z A;  4YPY A;  3KY7 A;  4YVI A;  3E5Y A;  4YQ4 A;  3OIJ A;  1V6Z A;  3BBH A;  3GYQ A;  4YQ5 A;  4YQ6 A;  3KNU A;  4YQ2 A;  1GZ0 A;  2HA8 A;  4YQI A;  1P9P A;  4YPZ A;  4CNF A;  4YQD A;  2YY8 A;  3AI9 X;  4L69 A;  3KW2 A;  4J3C A;  4RG1 A;  1UAJ A;  3DCM X;  3AXZ A;  1NXZ A;  4YQG A;  5FAI A;  1IPA A;  5GMC A;  4H3Y A;  1UAL A;  2I6D A;  4PZK A;  4YQC A;  3BBD A;  3NK6 A;  5GM8 A;  3QUV A;  4X3L A;  2QWV A;  4CNE A;  4YQJ A;  1OY5 A;  1X7P A;  4YQA A; 
#chains in the Genus database with same CATH topology
 1UAM A;  4CND A;  1O6D A;  4JAK A;  4KGN A;  1X7O A;  3N4J A;  1UAK A;  4YQK A;  1J85 A;  1VHK A;  1V2X A;  5D9F A;  4YVH A;  4FAK A;  3O7B A;  4JAL A;  4YQ9 A;  4YQ7 A;  3NK7 A;  5CO4 A;  1VHY A;  4JWG A;  2QMM A;  1MXI A;  4FMW A;  4YPW A;  1NS5 A;  4YQ0 A;  4XBO A;  2V3J A;  3KTY A;  4YQT A;  3ILK A;  2CX8 A;  4YQB A;  3AIA A;  4CNG A;  3N4K A;  2Z0Y A;  4YQ1 A;  2EGW A;  4YPX A;  3BBE A;  4IG6 A;  3L8U A;  2EGV A;  1VH0 A;  4X3M A;  4YQO A;  2O3A A;  4KDZ A;  4YQQ A;  4YQN A;  4YQR A;  4YQ3 A;  3OIN A;  3OII A;  3IEF A;  4MCC A;  1TO0 A;  4YVJ A;  4YVG A;  4E8B A;  1Z85 A;  1K3R A;  2V3K A;  5GMB A;  4JWJ A;  4MCD A;  4YQS A;  4JWH A;  3IC6 A;  4YQL A;  4YVK A;  4YQP A;  4MCB A;  1ZJR A;  3ONP A;  4YQ8 A;  4H3Z A;  4YPY A;  3KY7 A;  4YVI A;  3E5Y A;  4YQ4 A;  3OIJ A;  1V6Z A;  3BBH A;  3GYQ A;  4YQ5 A;  4YQ6 A;  3KNU A;  4YQ2 A;  1GZ0 A;  2HA8 A;  4YQI A;  1P9P A;  4YPZ A;  4CNF A;  4YQD A;  2YY8 A;  3AI9 X;  4L69 A;  3KW2 A;  4J3C A;  4RG1 A;  1UAJ A;  3DCM X;  3AXZ A;  1NXZ A;  4YQG A;  5FAI A;  1IPA A;  5GMC A;  4H3Y A;  1UAL A;  2I6D A;  4PZK A;  4YQC A;  3BBD A;  3NK6 A;  5GM8 A;  3QUV A;  4X3L A;  2QWV A;  4CNE A;  4YQJ A;  4JWF A;  1OY5 A;  1X7P A;  4YQA A; 
#chains in the Genus database with same CATH homology
 1UAM A;  4CND A;  1O6D A;  4JAK A;  4KGN A;  1X7O A;  3N4J A;  1UAK A;  4YQK A;  1J85 A;  1VHK A;  1V2X A;  5D9F A;  4YVH A;  4FAK A;  3O7B A;  4JAL A;  4YQ9 A;  4YQ7 A;  3NK7 A;  5CO4 A;  1VHY A;  4JWG A;  2QMM A;  1MXI A;  4FMW A;  4YPW A;  1NS5 A;  4YQ0 A;  4XBO A;  2V3J A;  3KTY A;  4YQT A;  3ILK A;  2CX8 A;  4YQB A;  3AIA A;  4CNG A;  3N4K A;  2Z0Y A;  4YQ1 A;  2EGW A;  4YPX A;  3BBE A;  4IG6 A;  3L8U A;  2EGV A;  1VH0 A;  4X3M A;  4YQO A;  2O3A A;  4KDZ A;  4YQQ A;  4YQN A;  4YQR A;  4YQ3 A;  3OIN A;  3OII A;  3IEF A;  4MCC A;  1TO0 A;  4YVJ A;  4YVG A;  4E8B A;  1Z85 A;  1K3R A;  2V3K A;  5GMB A;  4JWJ A;  4MCD A;  4YQS A;  4JWH A;  3IC6 A;  4YQL A;  4YVK A;  4YQP A;  4MCB A;  1ZJR A;  3ONP A;  4YQ8 A;  4H3Z A;  4YPY A;  3KY7 A;  4YVI A;  3E5Y A;  4YQ4 A;  3OIJ A;  1V6Z A;  3BBH A;  3GYQ A;  4YQ5 A;  4YQ6 A;  3KNU A;  4YQ2 A;  1GZ0 A;  2HA8 A;  4YQI A;  1P9P A;  4YPZ A;  4CNF A;  4YQD A;  2YY8 A;  3AI9 X;  4L69 A;  3KW2 A;  4J3C A;  4RG1 A;  1UAJ A;  3DCM X;  3AXZ A;  1NXZ A;  4YQG A;  5FAI A;  1IPA A;  5GMC A;  4H3Y A;  1UAL A;  2I6D A;  4PZK A;  4YQC A;  3BBD A;  3NK6 A;  5GM8 A;  3QUV A;  4X3L A;  2QWV A;  4CNE A;  4YQJ A;  4JWF A;  1OY5 A;  1X7P A;  4YQA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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