3L8UA

Crystal structure of smu.1707c, a putative rrna methyltransferase from streptococcus mutans ua159
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
Knots found
sequence length
161
structure length
154
Chain Sequence
LGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMYWDLDVHFYDSLNDFMNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEALRQQDFIGLELSHT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Putative rRNA methylase
publication title Crystal structure of SMU.1707c, a putative rRNA methyltransferase from streptococcus mutans UA159
rcsb
source organism Streptococcus mutans
total genus 46
structure length 154
sequence length 161
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2010-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3l8uA00
1OY5A 3ILKA 4YQAA 2V3JA 4YQDA 1TO0A 4CNGA 4YQ9A 1IPAA 3N4JA 4MCBA 5FAIA 4YQTA 4YQ0A 2QWVA 2O3AA 4RG1A 4YVHA 1VHKA 2EGWA 2YY8A 4JALA 4YQRA 4YQIA 4PZKA 1UAMA 3BBHA 1V6ZA 4YPZA 4CNDA 4YPYA 4YQ6A 4YQKA 4KDZA 2HA8A 4KGNA 4YVKA 3L8UA 3N4KA 4YQ1A 3BBDA 4E8BA 4XBOA 4YQ2A 3NK7A 4MCCA 1NXZA 1MXIA 2I6DA 1Z85A 4CNEA 1ZJRA 3OIJA 3E5YA 4YQJA 1UALA 4J3CA 1X7OA 2V3KA 3OIIA 1UAJA 5GM8A 3GYQA 3IEFA 2Z0YA 3AI9X 2EGVA 3KW2A 3NK6A 4YVJA 4YQPA 4YQLA 1NS5A 3O7BA 4YPXA 1K3RA 3BBEA 1P9PA 4CNFA 3KTYA 5CO4A 3ONPA 4YQ5A 4YQ4A 4IG6A 1VHYA 1GZ0A 4YQNA 4X3MA 3AIAA 4H3ZA 4YQ7A 2QMMA 4YQQA 5D9FA 3AXZA 2CX8A 3QUVA 4L69A 4YVGA 1X7PA 1V2XA 4YQBA 1J85A 4YQSA 5GMCA 4FAKA 4YVIA 4YQGA 4YPWA 1O6DA 3KNUA 1VH0A 3IC6A 3OINA 1UAKA 3DCMX 4YQOA 4YQ8A 4H3YA 4YQCA 5GMBA 3KY7A 4MCDA 4YQ3A 4JAKA 4X3LA
chains in the Genus database with same CATH superfamily
1OY5A 3ILKA 4YQAA 2V3JA 4YQDA 1TO0A 4CNGA 4YQ9A 1IPAA 3N4JA 4MCBA 5FAIA 4YQTA 4YQ0A 2QWVA 2O3AA 4RG1A 4YVHA 1VHKA 2EGWA 2YY8A 4JALA 4YQRA 4YQIA 4PZKA 1UAMA 3BBHA 1V6ZA 4YPZA 4CNDA 4YPYA 4YQ6A 4YQKA 4KDZA 2HA8A 4KGNA 4YVKA 3L8UA 3N4KA 4YQ1A 3BBDA 4E8BA 4XBOA 4YQ2A 3NK7A 4MCCA 1NXZA 1MXIA 2I6DA 1Z85A 4CNEA 1ZJRA 3OIJA 3E5YA 4JWJA 4YQJA 1UALA 4J3CA 1X7OA 2V3KA 3OIIA 1UAJA 5GM8A 3GYQA 3IEFA 2Z0YA 3AI9X 2EGVA 3KW2A 3NK6A 4YVJA 4YQPA 4YQLA 1NS5A 3O7BA 4YPXA 1K3RA 3BBEA 1P9PA 4CNFA 3KTYA 5CO4A 3ONPA 4YQ5A 4YQ4A 4IG6A 1VHYA 1GZ0A 4YQNA 4JWGA 4X3MA 3AIAA 4H3ZA 4YQ7A 2QMMA 4YQQA 5D9FA 3AXZA 2CX8A 3QUVA 4L69A 4YVGA 1X7PA 1V2XA 4YQBA 1J85A 4YQSA 4JWHA 4JWFA 5GMCA 4FAKA 4YVIA 4YQGA 4YPWA 4FMWA 1O6DA 3KNUA 1VH0A 3IC6A 3OINA 1UAKA 3DCMX 4YQOA 4YQ8A 4H3YA 4YQCA 5GMBA 3KY7A 4MCDA 4YQ3A 4JAKA 4X3LA
chains in the Genus database with same CATH topology
1OY5A 3ILKA 4YQAA 2V3JA 4YQDA 1TO0A 4CNGA 4YQ9A 1IPAA 3N4JA 4MCBA 5FAIA 4YQTA 4YQ0A 2QWVA 2O3AA 4RG1A 4YVHA 1VHKA 2EGWA 2YY8A 4JALA 4YQRA 4YQIA 4PZKA 1UAMA 3BBHA 1V6ZA 4YPZA 4CNDA 4YPYA 4YQ6A 4YQKA 4KDZA 2HA8A 4KGNA 4YVKA 3L8UA 3N4KA 4YQ1A 3BBDA 4E8BA 4XBOA 4YQ2A 3NK7A 4MCCA 1NXZA 1MXIA 2I6DA 1Z85A 4CNEA 1ZJRA 3OIJA 3E5YA 4JWJA 4YQJA 1UALA 4J3CA 1X7OA 2V3KA 3OIIA 1UAJA 5GM8A 3GYQA 3IEFA 2Z0YA 3AI9X 2EGVA 3KW2A 3NK6A 4YVJA 4YQPA 4YQLA 1NS5A 3O7BA 4YPXA 1K3RA 3BBEA 1P9PA 4CNFA 3KTYA 5CO4A 3ONPA 4YQ5A 4YQ4A 4IG6A 1VHYA 1GZ0A 4YQNA 4JWGA 4X3MA 3AIAA 4H3ZA 4YQ7A 2QMMA 4YQQA 5D9FA 3AXZA 2CX8A 3QUVA 4L69A 4YVGA 1X7PA 1V2XA 4YQBA 1J85A 4YQSA 4JWHA 4JWFA 5GMCA 4FAKA 4YVIA 4YQGA 4YPWA 4FMWA 1O6DA 3KNUA 1VH0A 3IC6A 3OINA 1UAKA 3DCMX 4YQOA 4YQ8A 4H3YA 4YQCA 5GMBA 3KY7A 4MCDA 4YQ3A 4JAKA 4X3LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OY5 A;  3ILK A;  4YQA A;  2V3J A;  4YQD A;  1TO0 A;  4CNG A;  4YQ9 A;  1IPA A;  3N4J A;  4MCB A;  5FAI A;  4YQT A;  4YQ0 A;  2QWV A;  2O3A A;  4RG1 A;  4YVH A;  1VHK A;  2EGW A;  2YY8 A;  4JAL A;  4YQR A;  4YQI A;  4PZK A;  1UAM A;  3BBH A;  1V6Z A;  4YPZ A;  4CND A;  4YPY A;  4YQ6 A;  4YQK A;  4KDZ A;  2HA8 A;  4KGN A;  4YVK A;  3L8U A;  3N4K A;  4YQ1 A;  3BBD A;  4E8B A;  4XBO A;  4YQ2 A;  3NK7 A;  4MCC A;  1NXZ A;  1MXI A;  2I6D A;  1Z85 A;  4CNE A;  1ZJR A;  3OIJ A;  3E5Y A;  4YQJ A;  1UAL A;  4J3C A;  1X7O A;  2V3K A;  3OII A;  1UAJ A;  5GM8 A;  3GYQ A;  3IEF A;  2Z0Y A;  3AI9 X;  2EGV A;  3KW2 A;  3NK6 A;  4YVJ A;  4YQP A;  4YQL A;  1NS5 A;  3O7B A;  4YPX A;  1K3R A;  3BBE A;  1P9P A;  4CNF A;  3KTY A;  5CO4 A;  3ONP A;  4YQ5 A;  4YQ4 A;  4IG6 A;  1VHY A;  1GZ0 A;  4YQN A;  4X3M A;  3AIA A;  4H3Z A;  4YQ7 A;  2QMM A;  4YQQ A;  5D9F A;  3AXZ A;  2CX8 A;  3QUV A;  4L69 A;  4YVG A;  1X7P A;  1V2X A;  4YQB A;  1J85 A;  4YQS A;  5GMC A;  4FAK A;  4YVI A;  4YQG A;  4YPW A;  1O6D A;  3KNU A;  1VH0 A;  3IC6 A;  3OIN A;  1UAK A;  3DCM X;  4YQO A;  4YQ8 A;  4H3Y A;  4YQC A;  5GMB A;  3KY7 A;  4MCD A;  4YQ3 A;  4JAK A;  4X3L A; 
#chains in the Genus database with same CATH topology
 1OY5 A;  3ILK A;  4YQA A;  2V3J A;  4YQD A;  1TO0 A;  4CNG A;  4YQ9 A;  1IPA A;  3N4J A;  4MCB A;  5FAI A;  4YQT A;  4YQ0 A;  2QWV A;  2O3A A;  4RG1 A;  4YVH A;  1VHK A;  2EGW A;  2YY8 A;  4JAL A;  4YQR A;  4YQI A;  4PZK A;  1UAM A;  3BBH A;  1V6Z A;  4YPZ A;  4CND A;  4YPY A;  4YQ6 A;  4YQK A;  4KDZ A;  2HA8 A;  4KGN A;  4YVK A;  3L8U A;  3N4K A;  4YQ1 A;  3BBD A;  4E8B A;  4XBO A;  4YQ2 A;  3NK7 A;  4MCC A;  1NXZ A;  1MXI A;  2I6D A;  1Z85 A;  4CNE A;  1ZJR A;  3OIJ A;  3E5Y A;  4JWJ A;  4YQJ A;  1UAL A;  4J3C A;  1X7O A;  2V3K A;  3OII A;  1UAJ A;  5GM8 A;  3GYQ A;  3IEF A;  2Z0Y A;  3AI9 X;  2EGV A;  3KW2 A;  3NK6 A;  4YVJ A;  4YQP A;  4YQL A;  1NS5 A;  3O7B A;  4YPX A;  1K3R A;  3BBE A;  1P9P A;  4CNF A;  3KTY A;  5CO4 A;  3ONP A;  4YQ5 A;  4YQ4 A;  4IG6 A;  1VHY A;  1GZ0 A;  4YQN A;  4JWG A;  4X3M A;  3AIA A;  4H3Z A;  4YQ7 A;  2QMM A;  4YQQ A;  5D9F A;  3AXZ A;  2CX8 A;  3QUV A;  4L69 A;  4YVG A;  1X7P A;  1V2X A;  4YQB A;  1J85 A;  4YQS A;  4JWH A;  4JWF A;  5GMC A;  4FAK A;  4YVI A;  4YQG A;  4YPW A;  4FMW A;  1O6D A;  3KNU A;  1VH0 A;  3IC6 A;  3OIN A;  1UAK A;  3DCM X;  4YQO A;  4YQ8 A;  4H3Y A;  4YQC A;  5GMB A;  3KY7 A;  4MCD A;  4YQ3 A;  4JAK A;  4X3L A; 
#chains in the Genus database with same CATH homology
 1OY5 A;  3ILK A;  4YQA A;  2V3J A;  4YQD A;  1TO0 A;  4CNG A;  4YQ9 A;  1IPA A;  3N4J A;  4MCB A;  5FAI A;  4YQT A;  4YQ0 A;  2QWV A;  2O3A A;  4RG1 A;  4YVH A;  1VHK A;  2EGW A;  2YY8 A;  4JAL A;  4YQR A;  4YQI A;  4PZK A;  1UAM A;  3BBH A;  1V6Z A;  4YPZ A;  4CND A;  4YPY A;  4YQ6 A;  4YQK A;  4KDZ A;  2HA8 A;  4KGN A;  4YVK A;  3L8U A;  3N4K A;  4YQ1 A;  3BBD A;  4E8B A;  4XBO A;  4YQ2 A;  3NK7 A;  4MCC A;  1NXZ A;  1MXI A;  2I6D A;  1Z85 A;  4CNE A;  1ZJR A;  3OIJ A;  3E5Y A;  4JWJ A;  4YQJ A;  1UAL A;  4J3C A;  1X7O A;  2V3K A;  3OII A;  1UAJ A;  5GM8 A;  3GYQ A;  3IEF A;  2Z0Y A;  3AI9 X;  2EGV A;  3KW2 A;  3NK6 A;  4YVJ A;  4YQP A;  4YQL A;  1NS5 A;  3O7B A;  4YPX A;  1K3R A;  3BBE A;  1P9P A;  4CNF A;  3KTY A;  5CO4 A;  3ONP A;  4YQ5 A;  4YQ4 A;  4IG6 A;  1VHY A;  1GZ0 A;  4YQN A;  4JWG A;  4X3M A;  3AIA A;  4H3Z A;  4YQ7 A;  2QMM A;  4YQQ A;  5D9F A;  3AXZ A;  2CX8 A;  3QUV A;  4L69 A;  4YVG A;  1X7P A;  1V2X A;  4YQB A;  1J85 A;  4YQS A;  4JWH A;  4JWF A;  5GMC A;  4FAK A;  4YVI A;  4YQG A;  4YPW A;  4FMW A;  1O6D A;  3KNU A;  1VH0 A;  3IC6 A;  3OIN A;  1UAK A;  3DCM X;  4YQO A;  4YQ8 A;  4H3Y A;  4YQC A;  5GMB A;  3KY7 A;  4MCD A;  4YQ3 A;  4JAK A;  4X3L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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