3N4KA

Putative rna methyltransferase from yersinia pestis in complex with s-adenosyl-l-homocysteine.
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
Knots found
sequence length
163
structure length
163
Chain Sequence
NAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords RNA methyltransferase
publication title X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
rcsb
source organism Yersinia pestis
total genus 52
structure length 163
sequence length 163
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2010-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3n4kA00
3OINA 4YQSA 3QUVA 3AIAA 1Z85A 4JALA 3N4JA 2V3KA 1NXZA 3BBDA 3KNUA 2EGVA 3L8UA 4YPWA 3IEFA 4YPZA 4KDZA 4E8BA 4YQJA 4YQAA 1VHYA 1V6ZA 1O6DA 4CNDA 3BBEA 1VH0A 4FAKA 3KW2A 1GZ0A 4YQIA 4X3MA 5D9FA 4H3ZA 4YQCA 3N4KA 4L69A 1ZJRA 4YQPA 2QWVA 4YVIA 4YQKA 4YQRA 4RG1A 4YQ7A 3GYQA 2CX8A 5FAIA 4YQ4A 4CNGA 5GMBA 2O3AA 4J3CA 3ILKA 4YQGA 1UAKA 4YVJA 4YPXA 5CO4A 4MCDA 5GMCA 2YY8A 3O7BA 4YQ2A 4YQNA 4YVHA 1J85A 4YQ5A 3OIIA 3OIJA 2V3JA 1TO0A 1OY5A 2Z0YA 4MCBA 3IC6A 4X3LA 4YQ0A 4MCCA 4YQDA 5GM8A 1NS5A 4JAKA 4YQLA 3KTYA 2I6DA 3KY7A 1X7PA 1UAJA 2QMMA 4H3YA 2HA8A 4YQ6A 1UAMA 4YVKA 4YPYA 3DCMX 1K3RA 4YQ1A 4YQQA 4YQOA 3E5YA 4YVGA 3NK7A 4YQ8A 3AXZA 4KGNA 3ONPA 1P9PA 3AI9X 1MXIA 1VHKA 4IG6A 4PZKA 4CNFA 3NK6A 3BBHA 4CNEA 2EGWA 4YQTA 4YQBA 1IPAA 1UALA 1V2XA 4XBOA 1X7OA 4YQ9A 4YQ3A
chains in the Genus database with same CATH superfamily
3OINA 4YQSA 3QUVA 3AIAA 1Z85A 4JALA 3N4JA 2V3KA 1NXZA 3BBDA 3KNUA 2EGVA 3L8UA 4YPWA 3IEFA 4YPZA 4KDZA 4E8BA 4YQJA 4YQAA 1VHYA 1V6ZA 1O6DA 4CNDA 3BBEA 1VH0A 4FAKA 3KW2A 1GZ0A 4YQIA 4JWGA 4YQ3A 4X3MA 5D9FA 4H3ZA 4YQCA 3N4KA 4L69A 1ZJRA 4YQPA 2QWVA 4YVIA 4JWFA 4YQKA 4YQRA 4RG1A 4YQ7A 3GYQA 2CX8A 5FAIA 4YQ4A 4CNGA 5GMBA 2O3AA 4J3CA 3ILKA 4YQGA 1UAKA 4YVJA 4YPXA 5CO4A 4MCDA 5GMCA 2YY8A 3O7BA 4YQ2A 4YQNA 4FMWA 4YVHA 1J85A 4YQ5A 3OIIA 3OIJA 2V3JA 1TO0A 1OY5A 2Z0YA 4MCBA 3IC6A 4X3LA 4YQ0A 4MCCA 4YQDA 5GM8A 1NS5A 4JAKA 4YQLA 3KTYA 2I6DA 3KY7A 1X7PA 1UAJA 2QMMA 4JWJA 4H3YA 2HA8A 4YQ6A 1UAMA 4YVKA 4YPYA 3DCMX 1K3RA 4YQ1A 4YQQA 4YQOA 3E5YA 4YVGA 3NK7A 4YQ8A 3AXZA 4KGNA 3ONPA 1P9PA 3AI9X 1MXIA 1VHKA 4IG6A 4PZKA 4CNFA 3NK6A 3BBHA 4CNEA 2EGWA 4YQTA 4YQBA 1IPAA 1UALA 1V2XA 4XBOA 1X7OA 4YQ9A 4JWHA
chains in the Genus database with same CATH topology
3OINA 4YQSA 3QUVA 3AIAA 1Z85A 4JALA 3N4JA 2V3KA 1NXZA 3BBDA 3KNUA 2EGVA 3L8UA 4YPWA 3IEFA 4YPZA 4KDZA 4E8BA 4YQJA 4YQAA 1VHYA 1V6ZA 1O6DA 4CNDA 3BBEA 1VH0A 4FAKA 3KW2A 1GZ0A 4YQIA 4JWGA 4YQ3A 4X3MA 5D9FA 4H3ZA 4YQCA 3N4KA 4L69A 1ZJRA 4YQPA 2QWVA 4YVIA 4JWFA 4YQKA 4YQRA 4RG1A 4YQ7A 3GYQA 2CX8A 5FAIA 4YQ4A 4CNGA 5GMBA 2O3AA 4J3CA 3ILKA 4YQGA 1UAKA 4YVJA 4YPXA 5CO4A 4MCDA 5GMCA 2YY8A 3O7BA 4YQ2A 4YQNA 4FMWA 4YVHA 1J85A 4YQ5A 3OIIA 3OIJA 2V3JA 1TO0A 1OY5A 2Z0YA 4MCBA 3IC6A 4X3LA 4YQ0A 4MCCA 4YQDA 5GM8A 1NS5A 4JAKA 4YQLA 3KTYA 2I6DA 3KY7A 1X7PA 1UAJA 2QMMA 4JWJA 4H3YA 2HA8A 4YQ6A 1UAMA 4YVKA 4YPYA 3DCMX 1K3RA 4YQ1A 4YQQA 4YQOA 3E5YA 4YVGA 3NK7A 4YQ8A 3AXZA 4KGNA 3ONPA 1P9PA 3AI9X 1MXIA 1VHKA 4IG6A 4PZKA 4CNFA 3NK6A 3BBHA 4CNEA 2EGWA 4YQTA 4YQBA 1IPAA 1UALA 1V2XA 4XBOA 1X7OA 4YQ9A 4JWHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OIN A;  4YQS A;  3QUV A;  3AIA A;  1Z85 A;  4JAL A;  3N4J A;  2V3K A;  1NXZ A;  3BBD A;  3KNU A;  2EGV A;  3L8U A;  4YPW A;  3IEF A;  4YPZ A;  4KDZ A;  4E8B A;  4YQJ A;  4YQA A;  1VHY A;  1V6Z A;  1O6D A;  4CND A;  3BBE A;  1VH0 A;  4FAK A;  3KW2 A;  1GZ0 A;  4YQI A;  4X3M A;  5D9F A;  4H3Z A;  4YQC A;  3N4K A;  4L69 A;  1ZJR A;  4YQP A;  2QWV A;  4YVI A;  4YQK A;  4YQR A;  4RG1 A;  4YQ7 A;  3GYQ A;  2CX8 A;  5FAI A;  4YQ4 A;  4CNG A;  5GMB A;  2O3A A;  4J3C A;  3ILK A;  4YQG A;  1UAK A;  4YVJ A;  4YPX A;  5CO4 A;  4MCD A;  5GMC A;  2YY8 A;  3O7B A;  4YQ2 A;  4YQN A;  4YVH A;  1J85 A;  4YQ5 A;  3OII A;  3OIJ A;  2V3J A;  1TO0 A;  1OY5 A;  2Z0Y A;  4MCB A;  3IC6 A;  4X3L A;  4YQ0 A;  4MCC A;  4YQD A;  5GM8 A;  1NS5 A;  4JAK A;  4YQL A;  3KTY A;  2I6D A;  3KY7 A;  1X7P A;  1UAJ A;  2QMM A;  4H3Y A;  2HA8 A;  4YQ6 A;  1UAM A;  4YVK A;  4YPY A;  3DCM X;  1K3R A;  4YQ1 A;  4YQQ A;  4YQO A;  3E5Y A;  4YVG A;  3NK7 A;  4YQ8 A;  3AXZ A;  4KGN A;  3ONP A;  1P9P A;  3AI9 X;  1MXI A;  1VHK A;  4IG6 A;  4PZK A;  4CNF A;  3NK6 A;  3BBH A;  4CNE A;  2EGW A;  4YQT A;  4YQB A;  1IPA A;  1UAL A;  1V2X A;  4XBO A;  1X7O A;  4YQ9 A;  4YQ3 A; 
#chains in the Genus database with same CATH topology
 3OIN A;  4YQS A;  3QUV A;  3AIA A;  1Z85 A;  4JAL A;  3N4J A;  2V3K A;  1NXZ A;  3BBD A;  3KNU A;  2EGV A;  3L8U A;  4YPW A;  3IEF A;  4YPZ A;  4KDZ A;  4E8B A;  4YQJ A;  4YQA A;  1VHY A;  1V6Z A;  1O6D A;  4CND A;  3BBE A;  1VH0 A;  4FAK A;  3KW2 A;  1GZ0 A;  4YQI A;  4JWG A;  4YQ3 A;  4X3M A;  5D9F A;  4H3Z A;  4YQC A;  3N4K A;  4L69 A;  1ZJR A;  4YQP A;  2QWV A;  4YVI A;  4JWF A;  4YQK A;  4YQR A;  4RG1 A;  4YQ7 A;  3GYQ A;  2CX8 A;  5FAI A;  4YQ4 A;  4CNG A;  5GMB A;  2O3A A;  4J3C A;  3ILK A;  4YQG A;  1UAK A;  4YVJ A;  4YPX A;  5CO4 A;  4MCD A;  5GMC A;  2YY8 A;  3O7B A;  4YQ2 A;  4YQN A;  4FMW A;  4YVH A;  1J85 A;  4YQ5 A;  3OII A;  3OIJ A;  2V3J A;  1TO0 A;  1OY5 A;  2Z0Y A;  4MCB A;  3IC6 A;  4X3L A;  4YQ0 A;  4MCC A;  4YQD A;  5GM8 A;  1NS5 A;  4JAK A;  4YQL A;  3KTY A;  2I6D A;  3KY7 A;  1X7P A;  1UAJ A;  2QMM A;  4JWJ A;  4H3Y A;  2HA8 A;  4YQ6 A;  1UAM A;  4YVK A;  4YPY A;  3DCM X;  1K3R A;  4YQ1 A;  4YQQ A;  4YQO A;  3E5Y A;  4YVG A;  3NK7 A;  4YQ8 A;  3AXZ A;  4KGN A;  3ONP A;  1P9P A;  3AI9 X;  1MXI A;  1VHK A;  4IG6 A;  4PZK A;  4CNF A;  3NK6 A;  3BBH A;  4CNE A;  2EGW A;  4YQT A;  4YQB A;  1IPA A;  1UAL A;  1V2X A;  4XBO A;  1X7O A;  4YQ9 A;  4JWH A; 
#chains in the Genus database with same CATH homology
 3OIN A;  4YQS A;  3QUV A;  3AIA A;  1Z85 A;  4JAL A;  3N4J A;  2V3K A;  1NXZ A;  3BBD A;  3KNU A;  2EGV A;  3L8U A;  4YPW A;  3IEF A;  4YPZ A;  4KDZ A;  4E8B A;  4YQJ A;  4YQA A;  1VHY A;  1V6Z A;  1O6D A;  4CND A;  3BBE A;  1VH0 A;  4FAK A;  3KW2 A;  1GZ0 A;  4YQI A;  4JWG A;  4YQ3 A;  4X3M A;  5D9F A;  4H3Z A;  4YQC A;  3N4K A;  4L69 A;  1ZJR A;  4YQP A;  2QWV A;  4YVI A;  4JWF A;  4YQK A;  4YQR A;  4RG1 A;  4YQ7 A;  3GYQ A;  2CX8 A;  5FAI A;  4YQ4 A;  4CNG A;  5GMB A;  2O3A A;  4J3C A;  3ILK A;  4YQG A;  1UAK A;  4YVJ A;  4YPX A;  5CO4 A;  4MCD A;  5GMC A;  2YY8 A;  3O7B A;  4YQ2 A;  4YQN A;  4FMW A;  4YVH A;  1J85 A;  4YQ5 A;  3OII A;  3OIJ A;  2V3J A;  1TO0 A;  1OY5 A;  2Z0Y A;  4MCB A;  3IC6 A;  4X3L A;  4YQ0 A;  4MCC A;  4YQD A;  5GM8 A;  1NS5 A;  4JAK A;  4YQL A;  3KTY A;  2I6D A;  3KY7 A;  1X7P A;  1UAJ A;  2QMM A;  4JWJ A;  4H3Y A;  2HA8 A;  4YQ6 A;  1UAM A;  4YVK A;  4YPY A;  3DCM X;  1K3R A;  4YQ1 A;  4YQQ A;  4YQO A;  3E5Y A;  4YVG A;  3NK7 A;  4YQ8 A;  3AXZ A;  4KGN A;  3ONP A;  1P9P A;  3AI9 X;  1MXI A;  1VHK A;  4IG6 A;  4PZK A;  4CNF A;  3NK6 A;  3BBH A;  4CNE A;  2EGW A;  4YQT A;  4YQB A;  1IPA A;  1UAL A;  1V2X A;  4XBO A;  1X7O A;  4YQ9 A;  4JWH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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