The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
53
|
Knots found |
|
sequence length |
163
|
structure length |
163
|
Chain Sequence |
AAEFMKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Characterization of the Staphylococcus aureus rRNA Methyltransferase Encoded by orfX, the Gene Containing the Staphylococcal Chromosome Cassette mec (SCCmec) Insertion Site.
pubmed doi rcsb |
| molecule tags |
Transferase, ribosomal protein
|
| source organism |
Staphylococcus aureus
|
| molecule keywords |
Ribosomal RNA large subunit methyltransferase H
|
| total genus |
53
|
| structure length |
163
|
| sequence length |
163
|
| other databases |
 KnotProt 2.0: K +31
|
| ec nomenclature |
ec
2.1.1.177: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase. |
| pdb deposition date | 2012-05-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02590 | SPOUT_MTase | Predicted SPOUT methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the Genus database with same CATH superfamily 4YPX A; 2Z0Y A; 4YQC A; 3DCM X; 3IEF A; 1P9P A; 3AI9 X; 4YPY A; 1IPA A; 4IG6 A; 4YQ4 A; 3KY7 A; 1O6D A; 3AIA A; 1UAL A; 4YQ9 A; 3IC6 A; 4MCB A; 4YPZ A; 1J85 A; 1OY5 A; 4YQK A; 1NS5 A; 4YVJ A; 4YQ2 A; 1V2X A; 3KTY A; 4YQN A; 3ILK A; 4YPW A; 3BBH A; 2V3K A; 3NK6 A; 4KDZ A; 3AXZ A; 4YQJ A; 5GMC A; 4YQ5 A; 4YVI A; 1UAK A; 4YQR A; 4XBO A; 4E8B A; 4YQ3 A; 4YQ7 A; 1Z85 A; 3O7B A; 4CNG A; 1V6Z A; 4YQ6 A; 4YVG A; 3ONP A; 5FAI A; 1ZJR A; 4MCD A; 1GZ0 A; 4X3L A; 2EGV A; 4YQG A; 4H3Y A; 3NK7 A; 5D9F A; 4YQ8 A; 2CX8 A; 4YQ1 A; 3OIJ A; 3BBD A; 1UAJ A; 3N4J A; 4YVH A; 5GMB A; 3OII A; 1NXZ A; 4PZK A; 3L8U A; 4YQO A; 4YQ0 A; 1VHK A; 2QMM A; 1X7P A; 3OIN A; 3QUV A; 4YQA A; 4JAK A; 4YQI A; 4YQB A; 1VHY A; 4YQL A; 4FAK A; 1UAM A; 4X3M A; 1VH0 A; 4CNE A; 3BBE A; 2O3A A; 2YY8 A; 4YQP A; 3GYQ A; 4H3Z A; 1MXI A; 1TO0 A; 2EGW A; 2V3J A; 4CNF A; 4CND A; 3KNU A; 2HA8 A; 3N4K A; 4MCC A; 1K3R A; 5CO4 A; 4YQQ A; 4RG1 A; 3KW2 A; 4J3C A; 1X7O A; 4YVK A; 4L69 A; 3E5Y A; 4YQS A; 4JAL A; 2I6D A; 4KGN A; 4YQT A; 4YQD A; 5GM8 A; 2QWV A; #chains in the Genus database with same CATH topology 4YPX A; 2Z0Y A; 4YQC A; 3DCM X; 3IEF A; 1P9P A; 3AI9 X; 4YPY A; 1IPA A; 4IG6 A; 4YQ4 A; 3KY7 A; 1O6D A; 3AIA A; 1UAL A; 4YQ9 A; 3IC6 A; 4MCB A; 4YPZ A; 1J85 A; 1OY5 A; 4YQK A; 1NS5 A; 4YVJ A; 4YQ2 A; 1V2X A; 3KTY A; 4YQN A; 3ILK A; 4YPW A; 3BBH A; 4JWF A; 2V3K A; 3NK6 A; 4KDZ A; 3AXZ A; 4YQJ A; 5GMC A; 4YQ5 A; 4YVI A; 1UAK A; 4YQR A; 4XBO A; 4E8B A; 4YQ3 A; 4YQ7 A; 1Z85 A; 3O7B A; 4CNG A; 1V6Z A; 4YQ6 A; 4YVG A; 3ONP A; 5FAI A; 1ZJR A; 4MCD A; 1GZ0 A; 4X3L A; 2EGV A; 4YQG A; 4H3Y A; 4JWG A; 3NK7 A; 5D9F A; 4YQ8 A; 2CX8 A; 4YQ1 A; 3OIJ A; 3BBD A; 1UAJ A; 3N4J A; 4YVH A; 5GMB A; 3OII A; 1NXZ A; 4PZK A; 3L8U A; 4YQO A; 4YQ0 A; 4JWJ A; 1VHK A; 2QMM A; 1X7P A; 3OIN A; 3QUV A; 4FMW A; 4YQA A; 4JAK A; 4YQI A; 4YQB A; 1VHY A; 4YQL A; 4FAK A; 1UAM A; 4X3M A; 1VH0 A; 4CNE A; 3BBE A; 2O3A A; 2YY8 A; 4YQP A; 4JWH A; 3GYQ A; 4H3Z A; 1MXI A; 1TO0 A; 2EGW A; 2V3J A; 4CNF A; 4CND A; 3KNU A; 2HA8 A; 3N4K A; 4MCC A; 1K3R A; 5CO4 A; 4YQQ A; 4RG1 A; 3KW2 A; 4J3C A; 1X7O A; 4YVK A; 4L69 A; 3E5Y A; 4YQS A; 4JAL A; 2I6D A; 4KGN A; 4YQT A; 4YQD A; 5GM8 A; 2QWV A; #chains in the Genus database with same CATH homology 4YPX A; 2Z0Y A; 4YQC A; 3DCM X; 3IEF A; 1P9P A; 3AI9 X; 4YPY A; 1IPA A; 4IG6 A; 4YQ4 A; 3KY7 A; 1O6D A; 3AIA A; 1UAL A; 4YQ9 A; 3IC6 A; 4MCB A; 4YPZ A; 1J85 A; 1OY5 A; 4YQK A; 1NS5 A; 4YVJ A; 4YQ2 A; 1V2X A; 3KTY A; 4YQN A; 3ILK A; 4YPW A; 3BBH A; 4JWF A; 2V3K A; 3NK6 A; 4KDZ A; 3AXZ A; 4YQJ A; 5GMC A; 4YQ5 A; 4YVI A; 1UAK A; 4YQR A; 4XBO A; 4E8B A; 4YQ3 A; 4YQ7 A; 1Z85 A; 3O7B A; 4CNG A; 1V6Z A; 4YQ6 A; 4YVG A; 3ONP A; 5FAI A; 1ZJR A; 4MCD A; 1GZ0 A; 4X3L A; 2EGV A; 4YQG A; 4H3Y A; 4JWG A; 3NK7 A; 5D9F A; 4YQ8 A; 2CX8 A; 4YQ1 A; 3OIJ A; 3BBD A; 1UAJ A; 3N4J A; 4YVH A; 5GMB A; 3OII A; 1NXZ A; 4PZK A; 3L8U A; 4YQO A; 4YQ0 A; 4JWJ A; 1VHK A; 2QMM A; 1X7P A; 3OIN A; 3QUV A; 4FMW A; 4YQA A; 4JAK A; 4YQI A; 4YQB A; 1VHY A; 4YQL A; 4FAK A; 1UAM A; 4X3M A; 1VH0 A; 4CNE A; 3BBE A; 2O3A A; 2YY8 A; 4YQP A; 4JWH A; 3GYQ A; 4H3Z A; 1MXI A; 1TO0 A; 2EGW A; 2V3J A; 4CNF A; 4CND A; 3KNU A; 2HA8 A; 3N4K A; 4MCC A; 1K3R A; 5CO4 A; 4YQQ A; 4RG1 A; 3KW2 A; 4J3C A; 1X7O A; 4YVK A; 4L69 A; 3E5Y A; 4YQS A; 4JAL A; 2I6D A; 4KGN A; 4YQT A; 4YQD A; 5GM8 A; 2QWV A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
