1E3YA

Death domain from human fadd/mort1
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
104
structure length
104
Chain Sequence
GSHMGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEVQQARDLQNRSGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title The Three-Dimensional Solution Structure and Dynamic Properties of the Human Fadd Death Domain
pubmed doi rcsb
molecule tags Apoptosis
source organism Homo sapiens
molecule keywords FADD PROTEIN
total genus 29
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2000-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 1e3yA00
4FH0A 2VGQA 4F42A 2M5VA 3MOPK 4N1LA 1A1ZA 1FADA 4IZ5E 4DWNA 2DBHA 2NZ7A 4ZBWA 3EZQA 1D2ZA 3CL3A 2DO9A 2MB9A 2B1WA 2A5YB 2L6AA 1NGRA 1C15A 2YQFA 4I16A 1WXPA 4IZAB 2YGSA 2F1SA 2G7RA 4UZ0A 4LWDA 2OF5A 2O71A 2MN4A 2DBDA 3J6JA 2A9IA 2NAQA 2N1FA 2BBRA 4M9SA 2YVIA 2LS7A 2N83A 4O7QA 4A2WA 2N97A 4N1JA 4RHWE 3CRDA 4O6XA 3KATA 4M9XA 1E41A 1ICHA 4QOBA 1DDFA 2BBZA 1E3YA 2HM2Q 3QF2A 2LWDA 1DGNA 4RHWA 1CWWA 4P4HA 3LQRA 2IB1A 1A1WA 4E9MA 4IZ7B 1N3KA 3MOPG 3LQQA 4N1KA 3YGSP 2KM6A 2MS8A 1WMGA 1Z6TA 2YU0A 4NQKA 4EWIA 1PN5A 4P4HI 4F44A 2DBGA 2DBFA 3YGSC 2N00A 2NSNA 4A2QA 4JUPA 3EZQB 2L9MA 1D2ZB 4M9ZA 2LWEA 2MPCA 2KN6A 1WH4A 4O9LA 2N80A 3J63A 4O9FA 1UCPA 4D8OA 3T6PA 2OF5H 1CY5A 2N7ZA 2P1HA 2MS7A 2D96A 4JQWA 2GF5A 1YGOA 3MOPA
chains in the Genus database with same CATH superfamily
4FH0A 2VGQA 4F42A 2M5VA 3MOPK 4N1LA 1A1ZA 1FADA 4IZ5E 4DWNA 2DBHA 2NZ7A 4ZBWA 3EZQA 1D2ZA 3CL3A 2DO9A 2XV9A 2MB9A 2B1WA 2A5YB 2L6AA 1NGRA 1C15A 2YQFA 4I16A 1WXPA 4IZAB 2YGSA 2F1SA 2G7RA 4UZ0A 4LWDA 2OF5A 2O71A 2MN4A 2DBDA 3J6JA 2A9IA 2NAQA 2N1FA 2BBRA 4M9SA 2YVIA 2LS7A 2N83A 4O7QA 4A2WA 2N97A 4N1JA 4RHWE 2MJMA 3CRDA 4O6XA 3KATA 4M9XA 1E41A 1ICHA 4QOBA 1DDFA 2BBZA 1E3YA 2HM2Q 2LWDA 3QF2A 1DGNA 4RHWA 1CWWA 4P4HA 3LQRA 2IB1A 1A1WA 4E9MA 4IZ7B 1N3KA 3MOPG 3LQQA 4N1KA 3YGSP 2KM6A 2MS8A 1WMGA 1Z6TA 2YU0A 4NQKA 4EWIA 1PN5A 4P4HI 4F44A 2DBGA 2DBFA 3YGSC 2N00A 2NSNA 4A2QA 4JUPA 3EZQB 2L9MA 1D2ZB 4M9ZA 2LWEA 2MPCA 2KN6A 1WH4A 4O9LA 2N80A 3J63A 4O9FA 1UCPA 4D8OA 3T6PA 2OF5H 1CY5A 2N7ZA 2P1HA 2MS7A 2D96A 4JQWA 2GF5A 1YGOA 3MOPA
chains in the Genus database with same CATH topology
4FH0A 2VGQA 4F42A 2M5VA 3MOPK 4N1LA 1A1ZA 1FADA 4IZ5E 4DWNA 2DBHA 2NZ7A 4ZBWA 3EZQA 1D2ZA 3CL3A 2DO9A 2XV9A 2MB9A 2B1WA 2A5YB 2L6AA 1NGRA 1C15A 2YQFA 4I16A 1WXPA 4IZAB 2YGSA 2F1SA 2G7RA 4UZ0A 4LWDA 2OF5A 2O71A 2MN4A 2DBDA 3J6JA 2A9IA 2NAQA 2N1FA 2BBRA 4M9SA 2YVIA 2LS7A 2N83A 4O7QA 4A2WA 2N97A 4N1JA 4RHWE 2MJMA 3CRDA 4O6XA 3KATA 4M9XA 1E41A 1ICHA 4QOBA 1DDFA 2BBZA 1E3YA 2HM2Q 2LWDA 3QF2A 1DGNA 4RHWA 1CWWA 4P4HA 3LQRA 2IB1A 1A1WA 4E9MA 4IZ7B 1N3KA 3MOPG 3LQQA 4N1KA 3YGSP 2KM6A 2MS8A 1WMGA 1Z6TA 2YU0A 4NQKA 4EWIA 1PN5A 4P4HI 4F44A 2DBGA 2DBFA 3YGSC 2N00A 2NSNA 4A2QA 4JUPA 3EZQB 2L9MA 1D2ZB 4M9ZA 2LWEA 2MPCA 2KN6A 1WH4A 4O9LA 2N80A 3J63A 4O9FA 1UCPA 4D8OA 3T6PA 2OF5H 1CY5A 2N7ZA 2P1HA 2MS7A 2D96A 4JQWA 2GF5A 1YGOA 3MOPA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4FH0 A;  2VGQ A;  4F42 A;  2M5V A;  3MOP K;  4N1L A;  1A1Z A;  1FAD A;  4IZ5 E;  4DWN A;  2DBH A;  2NZ7 A;  4ZBW A;  3EZQ A;  1D2Z A;  3CL3 A;  2DO9 A;  2MB9 A;  2B1W A;  2A5Y B;  2L6A A;  1NGR A;  1C15 A;  2YQF A;  4I16 A;  1WXP A;  4IZA B;  2YGS A;  2F1S A;  2G7R A;  4UZ0 A;  4LWD A;  2OF5 A;  2O71 A;  2MN4 A;  2DBD A;  3J6J A;  2A9I A;  2NAQ A;  2N1F A;  2BBR A;  4M9S A;  2YVI A;  2LS7 A;  2N83 A;  4O7Q A;  4A2W A;  2N97 A;  4N1J A;  4RHW E;  3CRD A;  4O6X A;  3KAT A;  4M9X A;  1E41 A;  1ICH A;  4QOB A;  1DDF A;  2BBZ A;  1E3Y A;  2HM2 Q;  3QF2 A;  2LWD A;  1DGN A;  4RHW A;  1CWW A;  4P4H A;  3LQR A;  2IB1 A;  1A1W A;  4E9M A;  4IZ7 B;  1N3K A;  3MOP G;  3LQQ A;  4N1K A;  3YGS P;  2KM6 A;  2MS8 A;  1WMG A;  1Z6T A;  2YU0 A;  4NQK A;  4EWI A;  1PN5 A;  4P4H I;  4F44 A;  2DBG A;  2DBF A;  3YGS C;  2N00 A;  2NSN A;  4A2Q A;  4JUP A;  3EZQ B;  2L9M A;  1D2Z B;  4M9Z A;  2LWE A;  2MPC A;  2KN6 A;  1WH4 A;  4O9L A;  2N80 A;  3J63 A;  4O9F A;  1UCP A;  4D8O A;  3T6P A;  2OF5 H;  1CY5 A;  2N7Z A;  2P1H A;  2MS7 A;  2D96 A;  4JQW A;  2GF5 A;  1YGO A;  3MOP A; 
#chains in the Genus database with same CATH topology
 4FH0 A;  2VGQ A;  4F42 A;  2M5V A;  3MOP K;  4N1L A;  1A1Z A;  1FAD A;  4IZ5 E;  4DWN A;  2DBH A;  2NZ7 A;  4ZBW A;  3EZQ A;  1D2Z A;  3CL3 A;  2DO9 A;  2XV9 A;  2MB9 A;  2B1W A;  2A5Y B;  2L6A A;  1NGR A;  1C15 A;  2YQF A;  4I16 A;  1WXP A;  4IZA B;  2YGS A;  2F1S A;  2G7R A;  4UZ0 A;  4LWD A;  2OF5 A;  2O71 A;  2MN4 A;  2DBD A;  3J6J A;  2A9I A;  2NAQ A;  2N1F A;  2BBR A;  4M9S A;  2YVI A;  2LS7 A;  2N83 A;  4O7Q A;  4A2W A;  2N97 A;  4N1J A;  4RHW E;  2MJM A;  3CRD A;  4O6X A;  3KAT A;  4M9X A;  1E41 A;  1ICH A;  4QOB A;  1DDF A;  2BBZ A;  1E3Y A;  2HM2 Q;  2LWD A;  3QF2 A;  1DGN A;  4RHW A;  1CWW A;  4P4H A;  3LQR A;  2IB1 A;  1A1W A;  4E9M A;  4IZ7 B;  1N3K A;  3MOP G;  3LQQ A;  4N1K A;  3YGS P;  2KM6 A;  2MS8 A;  1WMG A;  1Z6T A;  2YU0 A;  4NQK A;  4EWI A;  1PN5 A;  4P4H I;  4F44 A;  2DBG A;  2DBF A;  3YGS C;  2N00 A;  2NSN A;  4A2Q A;  4JUP A;  3EZQ B;  2L9M A;  1D2Z B;  4M9Z A;  2LWE A;  2MPC A;  2KN6 A;  1WH4 A;  4O9L A;  2N80 A;  3J63 A;  4O9F A;  1UCP A;  4D8O A;  3T6P A;  2OF5 H;  1CY5 A;  2N7Z A;  2P1H A;  2MS7 A;  2D96 A;  4JQW A;  2GF5 A;  1YGO A;  3MOP A; 
#chains in the Genus database with same CATH homology
 4FH0 A;  2VGQ A;  4F42 A;  2M5V A;  3MOP K;  4N1L A;  1A1Z A;  1FAD A;  4IZ5 E;  4DWN A;  2DBH A;  2NZ7 A;  4ZBW A;  3EZQ A;  1D2Z A;  3CL3 A;  2DO9 A;  2XV9 A;  2MB9 A;  2B1W A;  2A5Y B;  2L6A A;  1NGR A;  1C15 A;  2YQF A;  4I16 A;  1WXP A;  4IZA B;  2YGS A;  2F1S A;  2G7R A;  4UZ0 A;  4LWD A;  2OF5 A;  2O71 A;  2MN4 A;  2DBD A;  3J6J A;  2A9I A;  2NAQ A;  2N1F A;  2BBR A;  4M9S A;  2YVI A;  2LS7 A;  2N83 A;  4O7Q A;  4A2W A;  2N97 A;  4N1J A;  4RHW E;  2MJM A;  3CRD A;  4O6X A;  3KAT A;  4M9X A;  1E41 A;  1ICH A;  4QOB A;  1DDF A;  2BBZ A;  1E3Y A;  2HM2 Q;  2LWD A;  3QF2 A;  1DGN A;  4RHW A;  1CWW A;  4P4H A;  3LQR A;  2IB1 A;  1A1W A;  4E9M A;  4IZ7 B;  1N3K A;  3MOP G;  3LQQ A;  4N1K A;  3YGS P;  2KM6 A;  2MS8 A;  1WMG A;  1Z6T A;  2YU0 A;  4NQK A;  4EWI A;  1PN5 A;  4P4H I;  4F44 A;  2DBG A;  2DBF A;  3YGS C;  2N00 A;  2NSN A;  4A2Q A;  4JUP A;  3EZQ B;  2L9M A;  1D2Z B;  4M9Z A;  2LWE A;  2MPC A;  2KN6 A;  1WH4 A;  4O9L A;  2N80 A;  3J63 A;  4O9F A;  1UCP A;  4D8O A;  3T6P A;  2OF5 H;  1CY5 A;  2N7Z A;  2P1H A;  2MS7 A;  2D96 A;  4JQW A;  2GF5 A;  1YGO A;  3MOP A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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