2YQFA

Solution structure of the death domain of ankyrin-1
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
111
structure length
111
Chain Sequence
GSSGSSGPGSLSGTEQAEMKMAVISEHLGLSWAELARELQFSVEDINRIRVENPNSLLEQSVALLNLWVIREGQNANMENLYTALQSIDRGEIVNMLEGSGRQSRNLKPDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Solution structure of the death domain of Ankyrin-1
rcsb
source organism Homo sapiens
molecule tags Protein binding
molecule keywords Ankyrin-1
total genus 26
structure length 111
sequence length 111
ec nomenclature
pdb deposition date 2007-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2yqfA01
2IB1A 2GF5A 2LS7A 1UCPA 4A2QA 1N3KA 1DDFA 4JQWA 3MOPA 2DBFA 4NQKA 4N1KA 3J63A 3T6PA 3MOPK 4FH0A 4O6XA 2MS7A 1FADA 4IZAB 1PN5A 1E41A 4M9XA 4O9FA 4E9MA 2HM2Q 2MN4A 4ZBWA 4A2WA 2A9IA 1WH4A 2DBDA 2DO9A 2VGQA 4O9LA 3J6JA 4DWNA 4RHWA 1A1WA 3EZQA 2BBZA 2YVIA 2L9MA 2MS8A 2NAQA 4EWIA 4QOBA 4RHWE 4F44A 3YGSP 3YGSC 4UZ0A 4I16A 2N7ZA 2N1FA 1YGOA 2MPCA 1D2ZA 2KN6A 3CL3A 2LWDA 1WXPA 2LWEA 3LQQA 2MB9A 2A5YB 2NSNA 4P4HA 2DBGA 2M5VA 2YU0A 4N1LA 4IZ7B 2OF5A 2BBRA 4N1JA 1NGRA 3KATA 3MOPG 1ICHA 4P4HI 1A1ZA 1C15A 1Z6TA 1WMGA 2OF5H 1E3YA 2D96A 4JUPA 1DGNA 1CY5A 2F1SA 2N83A 2G7RA 4IZ5E 4F42A 2NZ7A 2DBHA 1D2ZB 4LWDA 1CWWA 3LQRA 2N80A 4M9SA 2B1WA 2L6AA 2N97A 2O71A 2P1HA 4D8OA 2KM6A 4O7QA 2YQFA 3EZQB 2N00A 2YGSA 4M9ZA 3QF2A 3CRDA
chains in the Genus database with same CATH superfamily
2IB1A 2GF5A 2LS7A 1UCPA 4A2QA 1N3KA 1DDFA 4JQWA 3MOPA 2DBFA 4NQKA 4N1KA 3J63A 3T6PA 3MOPK 4FH0A 4O6XA 2MS7A 1FADA 4IZAB 1PN5A 1E41A 4M9XA 4O9FA 4E9MA 2HM2Q 2MN4A 2XV9A 4ZBWA 4A2WA 2A9IA 1WH4A 2DBDA 2DO9A 2VGQA 4O9LA 3J6JA 2MJMA 4DWNA 4RHWA 1A1WA 3EZQA 2BBZA 2YVIA 2L9MA 2MS8A 2NAQA 4EWIA 4QOBA 4RHWE 4F44A 3YGSP 3YGSC 4UZ0A 4I16A 2N7ZA 2N1FA 1YGOA 2MPCA 1D2ZA 2KN6A 3CL3A 2LWDA 1WXPA 2LWEA 3LQQA 2MB9A 2A5YB 2NSNA 4P4HA 2DBGA 2M5VA 2YU0A 4N1LA 4IZ7B 2OF5A 2BBRA 4N1JA 1NGRA 3KATA 3MOPG 1ICHA 4P4HI 1A1ZA 1C15A 1Z6TA 1WMGA 2OF5H 1E3YA 2D96A 4JUPA 1DGNA 1CY5A 2F1SA 2N83A 2G7RA 4IZ5E 4F42A 2NZ7A 2DBHA 1D2ZB 4LWDA 1CWWA 3LQRA 2N80A 4M9SA 2B1WA 2L6AA 2N97A 2O71A 2P1HA 4D8OA 2KM6A 4O7QA 2YQFA 3EZQB 2N00A 2YGSA 4M9ZA 3QF2A 3CRDA
chains in the Genus database with same CATH topology
2IB1A 2GF5A 2LS7A 1UCPA 4A2QA 1N3KA 1DDFA 4JQWA 3MOPA 2DBFA 4NQKA 4N1KA 3J63A 3T6PA 3MOPK 4FH0A 4O6XA 2MS7A 1FADA 4IZAB 1PN5A 1E41A 4M9XA 4O9FA 4E9MA 2HM2Q 2MN4A 2XV9A 4ZBWA 4A2WA 2A9IA 1WH4A 2DBDA 2DO9A 2VGQA 4O9LA 3J6JA 2MJMA 4DWNA 4RHWA 1A1WA 3EZQA 2BBZA 2YVIA 2L9MA 2MS8A 2NAQA 4EWIA 4QOBA 4RHWE 4F44A 3YGSP 3YGSC 4UZ0A 4I16A 2N7ZA 2N1FA 1YGOA 2MPCA 1D2ZA 2KN6A 3CL3A 2LWDA 1WXPA 2LWEA 3LQQA 2MB9A 2A5YB 2NSNA 4P4HA 2DBGA 2M5VA 2YU0A 4N1LA 4IZ7B 2OF5A 2BBRA 4N1JA 1NGRA 3KATA 3MOPG 1ICHA 4P4HI 1A1ZA 1C15A 1Z6TA 1WMGA 2OF5H 1E3YA 2D96A 4JUPA 1DGNA 1CY5A 2F1SA 2N83A 2G7RA 4IZ5E 4F42A 2NZ7A 2DBHA 1D2ZB 4LWDA 1CWWA 3LQRA 2N80A 4M9SA 2B1WA 2L6AA 2N97A 2O71A 2P1HA 4D8OA 2KM6A 4O7QA 2YQFA 3EZQB 2N00A 2YGSA 4M9ZA 3QF2A 3CRDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IB1 A;  2GF5 A;  2LS7 A;  1UCP A;  4A2Q A;  1N3K A;  1DDF A;  4JQW A;  3MOP A;  2DBF A;  4NQK A;  4N1K A;  3J63 A;  3T6P A;  3MOP K;  4FH0 A;  4O6X A;  2MS7 A;  1FAD A;  4IZA B;  1PN5 A;  1E41 A;  4M9X A;  4O9F A;  4E9M A;  2HM2 Q;  2MN4 A;  4ZBW A;  4A2W A;  2A9I A;  1WH4 A;  2DBD A;  2DO9 A;  2VGQ A;  4O9L A;  3J6J A;  4DWN A;  4RHW A;  1A1W A;  3EZQ A;  2BBZ A;  2YVI A;  2L9M A;  2MS8 A;  2NAQ A;  4EWI A;  4QOB A;  4RHW E;  4F44 A;  3YGS P;  3YGS C;  4UZ0 A;  4I16 A;  2N7Z A;  2N1F A;  1YGO A;  2MPC A;  1D2Z A;  2KN6 A;  3CL3 A;  2LWD A;  1WXP A;  2LWE A;  3LQQ A;  2MB9 A;  2A5Y B;  2NSN A;  4P4H A;  2DBG A;  2M5V A;  2YU0 A;  4N1L A;  4IZ7 B;  2OF5 A;  2BBR A;  4N1J A;  1NGR A;  3KAT A;  3MOP G;  1ICH A;  4P4H I;  1A1Z A;  1C15 A;  1Z6T A;  1WMG A;  2OF5 H;  1E3Y A;  2D96 A;  4JUP A;  1DGN A;  1CY5 A;  2F1S A;  2N83 A;  2G7R A;  4IZ5 E;  4F42 A;  2NZ7 A;  2DBH A;  1D2Z B;  4LWD A;  1CWW A;  3LQR A;  2N80 A;  4M9S A;  2B1W A;  2L6A A;  2N97 A;  2O71 A;  2P1H A;  4D8O A;  2KM6 A;  4O7Q A;  2YQF A;  3EZQ B;  2N00 A;  2YGS A;  4M9Z A;  3QF2 A;  3CRD A; 
#chains in the Genus database with same CATH topology
 2IB1 A;  2GF5 A;  2LS7 A;  1UCP A;  4A2Q A;  1N3K A;  1DDF A;  4JQW A;  3MOP A;  2DBF A;  4NQK A;  4N1K A;  3J63 A;  3T6P A;  3MOP K;  4FH0 A;  4O6X A;  2MS7 A;  1FAD A;  4IZA B;  1PN5 A;  1E41 A;  4M9X A;  4O9F A;  4E9M A;  2HM2 Q;  2MN4 A;  2XV9 A;  4ZBW A;  4A2W A;  2A9I A;  1WH4 A;  2DBD A;  2DO9 A;  2VGQ A;  4O9L A;  3J6J A;  2MJM A;  4DWN A;  4RHW A;  1A1W A;  3EZQ A;  2BBZ A;  2YVI A;  2L9M A;  2MS8 A;  2NAQ A;  4EWI A;  4QOB A;  4RHW E;  4F44 A;  3YGS P;  3YGS C;  4UZ0 A;  4I16 A;  2N7Z A;  2N1F A;  1YGO A;  2MPC A;  1D2Z A;  2KN6 A;  3CL3 A;  2LWD A;  1WXP A;  2LWE A;  3LQQ A;  2MB9 A;  2A5Y B;  2NSN A;  4P4H A;  2DBG A;  2M5V A;  2YU0 A;  4N1L A;  4IZ7 B;  2OF5 A;  2BBR A;  4N1J A;  1NGR A;  3KAT A;  3MOP G;  1ICH A;  4P4H I;  1A1Z A;  1C15 A;  1Z6T A;  1WMG A;  2OF5 H;  1E3Y A;  2D96 A;  4JUP A;  1DGN A;  1CY5 A;  2F1S A;  2N83 A;  2G7R A;  4IZ5 E;  4F42 A;  2NZ7 A;  2DBH A;  1D2Z B;  4LWD A;  1CWW A;  3LQR A;  2N80 A;  4M9S A;  2B1W A;  2L6A A;  2N97 A;  2O71 A;  2P1H A;  4D8O A;  2KM6 A;  4O7Q A;  2YQF A;  3EZQ B;  2N00 A;  2YGS A;  4M9Z A;  3QF2 A;  3CRD A; 
#chains in the Genus database with same CATH homology
 2IB1 A;  2GF5 A;  2LS7 A;  1UCP A;  4A2Q A;  1N3K A;  1DDF A;  4JQW A;  3MOP A;  2DBF A;  4NQK A;  4N1K A;  3J63 A;  3T6P A;  3MOP K;  4FH0 A;  4O6X A;  2MS7 A;  1FAD A;  4IZA B;  1PN5 A;  1E41 A;  4M9X A;  4O9F A;  4E9M A;  2HM2 Q;  2MN4 A;  2XV9 A;  4ZBW A;  4A2W A;  2A9I A;  1WH4 A;  2DBD A;  2DO9 A;  2VGQ A;  4O9L A;  3J6J A;  2MJM A;  4DWN A;  4RHW A;  1A1W A;  3EZQ A;  2BBZ A;  2YVI A;  2L9M A;  2MS8 A;  2NAQ A;  4EWI A;  4QOB A;  4RHW E;  4F44 A;  3YGS P;  3YGS C;  4UZ0 A;  4I16 A;  2N7Z A;  2N1F A;  1YGO A;  2MPC A;  1D2Z A;  2KN6 A;  3CL3 A;  2LWD A;  1WXP A;  2LWE A;  3LQQ A;  2MB9 A;  2A5Y B;  2NSN A;  4P4H A;  2DBG A;  2M5V A;  2YU0 A;  4N1L A;  4IZ7 B;  2OF5 A;  2BBR A;  4N1J A;  1NGR A;  3KAT A;  3MOP G;  1ICH A;  4P4H I;  1A1Z A;  1C15 A;  1Z6T A;  1WMG A;  2OF5 H;  1E3Y A;  2D96 A;  4JUP A;  1DGN A;  1CY5 A;  2F1S A;  2N83 A;  2G7R A;  4IZ5 E;  4F42 A;  2NZ7 A;  2DBH A;  1D2Z B;  4LWD A;  1CWW A;  3LQR A;  2N80 A;  4M9S A;  2B1W A;  2L6A A;  2N97 A;  2O71 A;  2P1H A;  4D8O A;  2KM6 A;  4O7Q A;  2YQF A;  3EZQ B;  2N00 A;  2YGS A;  4M9Z A;  3QF2 A;  3CRD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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