2XV9A

The solution structure of aba-1a saturated with oleic acid
Total Genus 46
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
134
structure length
134
Chain Sequence
GSPEFHHFTLESSLDTHLKWLSQEQKDELLKMKKDGKAKKELEAKILHYYDELEGDAKKEATEHLKGGCREILKHVVGEEKAAELKNLKDSGASKEELKAKVEEALHAVTDEEKKQYIADFGPACKKIYGVHTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Solution structure of a repeated unit of the ABA-1 nematode polyprotein allergen of Ascaris reveals a novel fold and two discrete lipid-binding sites.
pubmed doi rcsb
source organism Ascaris suum
molecule tags Lipid binding protein
molecule keywords ABA-1A1 REPEAT UNIT
total genus 46
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2010-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16469 NPA Nematode polyprotein allergen ABA-1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.30 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2xv9A00
2XV9A
chains in the Genus database with same CATH superfamily
2MS8A 2DBHA 3QF2A 4O9FA 2DO9A 2LWEA 1PN5A 2MB9A 4N1KA 2MN4A 2P1HA 4RHWA 1YGOA 2LS7A 2MPCA 2NZ7A 4IZ5E 3LQQA 2M5VA 1DGNA 2VGQA 1E41A 2F1SA 2BBRA 4N1JA 4IZAB 2OF5A 3EZQA 4M9XA 1C15A 2N97A 2YVIA 2B1WA 4UZ0A 1CWWA 3YGSC 4LWDA 4A2WA 1FADA 4O9LA 4A2QA 1D2ZB 4N1LA 3J6JA 2N00A 2L9MA 2KN6A 3T6PA 4P4HI 1DDFA 2A5YB 1ICHA 4O7QA 3MOPK 4O6XA 1E3YA 4ZBWA 2BBZA 3LQRA 3CRDA 3EZQB 1CY5A 2LWDA 2HM2Q 2O71A 2YU0A 4FH0A 1D2ZA 4JQWA 4F44A 1A1WA 2A9IA 4QOBA 2N7ZA 4E9MA 2YQFA 2NSNA 4M9SA 2IB1A 3J63A 3CL3A 2DBGA 4RHWE 4DWNA 3YGSP 1A1ZA 4P4HA 4IZ7B 4I16A 2KM6A 1NGRA 1Z6TA 2DBDA 2MS7A 4JUPA 2OF5H 2N80A 2L6AA 4F42A 4EWIA 2DBFA 3MOPA 2GF5A 1N3KA 3MOPG 1UCPA 2N1FA 2G7RA 2N83A 1WXPA 4D8OA 4NQKA 3KATA 1WMGA 2MJMA 2NAQA 2D96A 1WH4A 2YGSA 4M9ZA 2XV9A
chains in the Genus database with same CATH topology
2MS8A 2DBHA 3QF2A 4O9FA 2DO9A 2LWEA 1PN5A 2MB9A 4N1KA 2MN4A 2P1HA 4RHWA 1YGOA 2LS7A 2MPCA 2NZ7A 4IZ5E 3LQQA 2M5VA 1DGNA 2VGQA 1E41A 2F1SA 2BBRA 4N1JA 4IZAB 2OF5A 3EZQA 4M9XA 1C15A 2N97A 2YVIA 2B1WA 4UZ0A 1CWWA 3YGSC 4LWDA 4A2WA 1FADA 4O9LA 4A2QA 1D2ZB 4N1LA 3J6JA 2N00A 2L9MA 2KN6A 3T6PA 4P4HI 1DDFA 2A5YB 1ICHA 4O7QA 3MOPK 4O6XA 1E3YA 4ZBWA 2BBZA 3LQRA 3CRDA 3EZQB 1CY5A 2LWDA 2HM2Q 2O71A 2YU0A 4FH0A 1D2ZA 4JQWA 4F44A 1A1WA 2A9IA 4QOBA 2N7ZA 4E9MA 2YQFA 2NSNA 4M9SA 2IB1A 3J63A 3CL3A 2DBGA 4RHWE 4DWNA 3YGSP 1A1ZA 4P4HA 4IZ7B 4I16A 2KM6A 1NGRA 1Z6TA 2DBDA 2MS7A 4JUPA 2OF5H 2N80A 2L6AA 4F42A 4EWIA 2DBFA 3MOPA 2GF5A 1N3KA 3MOPG 1UCPA 2N1FA 2G7RA 2N83A 1WXPA 4D8OA 4NQKA 3KATA 1WMGA 2MJMA 2NAQA 2D96A 1WH4A 2YGSA 4M9ZA 2XV9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XV9 A; 
#chains in the Genus database with same CATH topology
 2MS8 A;  2DBH A;  3QF2 A;  4O9F A;  2DO9 A;  2LWE A;  1PN5 A;  2MB9 A;  4N1K A;  2MN4 A;  2P1H A;  4RHW A;  1YGO A;  2LS7 A;  2MPC A;  2NZ7 A;  4IZ5 E;  3LQQ A;  2M5V A;  1DGN A;  2VGQ A;  1E41 A;  2F1S A;  2BBR A;  4N1J A;  4IZA B;  2OF5 A;  3EZQ A;  4M9X A;  1C15 A;  2N97 A;  2YVI A;  2B1W A;  4UZ0 A;  1CWW A;  3YGS C;  4LWD A;  4A2W A;  1FAD A;  4O9L A;  4A2Q A;  1D2Z B;  4N1L A;  3J6J A;  2N00 A;  2L9M A;  2KN6 A;  3T6P A;  4P4H I;  1DDF A;  2A5Y B;  1ICH A;  4O7Q A;  3MOP K;  4O6X A;  1E3Y A;  4ZBW A;  2BBZ A;  3LQR A;  3CRD A;  3EZQ B;  1CY5 A;  2LWD A;  2HM2 Q;  2O71 A;  2YU0 A;  4FH0 A;  1D2Z A;  4JQW A;  4F44 A;  1A1W A;  2A9I A;  4QOB A;  2N7Z A;  4E9M A;  2YQF A;  2NSN A;  4M9S A;  2IB1 A;  3J63 A;  3CL3 A;  2DBG A;  4RHW E;  4DWN A;  3YGS P;  1A1Z A;  4P4H A;  4IZ7 B;  4I16 A;  2KM6 A;  1NGR A;  1Z6T A;  2DBD A;  2MS7 A;  4JUP A;  2OF5 H;  2N80 A;  2L6A A;  4F42 A;  4EWI A;  2DBF A;  3MOP A;  2GF5 A;  1N3K A;  3MOP G;  1UCP A;  2N1F A;  2G7R A;  2N83 A;  1WXP A;  4D8O A;  4NQK A;  3KAT A;  1WMG A;  2MJM A;  2NAQ A;  2D96 A;  1WH4 A;  2YGS A;  4M9Z A;  2XV9 A; 
#chains in the Genus database with same CATH homology
 2MS8 A;  2DBH A;  3QF2 A;  4O9F A;  2DO9 A;  2LWE A;  1PN5 A;  2MB9 A;  4N1K A;  2MN4 A;  2P1H A;  4RHW A;  1YGO A;  2LS7 A;  2MPC A;  2NZ7 A;  4IZ5 E;  3LQQ A;  2M5V A;  1DGN A;  2VGQ A;  1E41 A;  2F1S A;  2BBR A;  4N1J A;  4IZA B;  2OF5 A;  3EZQ A;  4M9X A;  1C15 A;  2N97 A;  2YVI A;  2B1W A;  4UZ0 A;  1CWW A;  3YGS C;  4LWD A;  4A2W A;  1FAD A;  4O9L A;  4A2Q A;  1D2Z B;  4N1L A;  3J6J A;  2N00 A;  2L9M A;  2KN6 A;  3T6P A;  4P4H I;  1DDF A;  2A5Y B;  1ICH A;  4O7Q A;  3MOP K;  4O6X A;  1E3Y A;  4ZBW A;  2BBZ A;  3LQR A;  3CRD A;  3EZQ B;  1CY5 A;  2LWD A;  2HM2 Q;  2O71 A;  2YU0 A;  4FH0 A;  1D2Z A;  4JQW A;  4F44 A;  1A1W A;  2A9I A;  4QOB A;  2N7Z A;  4E9M A;  2YQF A;  2NSN A;  4M9S A;  2IB1 A;  3J63 A;  3CL3 A;  2DBG A;  4RHW E;  4DWN A;  3YGS P;  1A1Z A;  4P4H A;  4IZ7 B;  4I16 A;  2KM6 A;  1NGR A;  1Z6T A;  2DBD A;  2MS7 A;  4JUP A;  2OF5 H;  2N80 A;  2L6A A;  4F42 A;  4EWI A;  2DBF A;  3MOP A;  2GF5 A;  1N3K A;  3MOP G;  1UCP A;  2N1F A;  2G7R A;  2N83 A;  1WXP A;  4D8O A;  4NQK A;  3KAT A;  1WMG A;  2MJM A;  2NAQ A;  2D96 A;  1WH4 A;  2YGS A;  4M9Z A;  2XV9 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...