1NGRA

Death domain of p75 low affinity neurotrophin receptor, residues 334-418, nmr, 20 structures
Total Genus 35
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
85
structure length
85
Chain Sequence
GNLYSSLPLTKREEVEKLLNGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWGAQDSATLDALLAALRRIQRADIVESLCSE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title NMR structure of the death domain of the p75 neurotrophin receptor.
pubmed doi rcsb
source organism Rattus norvegicus
molecule tags Receptor
molecule keywords P75 LOW AFFINITY NEUROTROPHIN RECEPTOR
total genus 35
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 1997-01-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 1ngrA00
4O9LA 2L6AA 2DBDA 4JQWA 4N1LA 4IZ7B 4M9XA 2BBRA 4P4HI 1D2ZB 1E3YA 4A2QA 1DGNA 3MOPG 2N83A 2KM6A 4QOBA 2YVIA 1UCPA 1Z6TA 2D96A 2MS8A 1C15A 3CRDA 3EZQB 4UZ0A 2N80A 2DBHA 3J6JA 1FADA 2O71A 2N7ZA 2YU0A 1N3KA 4RHWE 4FH0A 2MPCA 4O7QA 4DWNA 2NZ7A 3MOPK 3T6PA 4D8OA 2OF5A 4F44A 2NAQA 4F42A 2N97A 3MOPA 3EZQA 2LWDA 2VGQA 2MS7A 2P1HA 3CL3A 2KN6A 2DO9A 4N1KA 2MB9A 2DBFA 2B1WA 4IZ5E 1A1WA 4O9FA 4NQKA 3LQRA 3QF2A 2OF5H 1DDFA 2HM2Q 2MN4A 2N00A 4ZBWA 3LQQA 4E9MA 4LWDA 2YQFA 1WXPA 2N1FA 1A1ZA 4I16A 1E41A 3J63A 1NGRA 3YGSC 2YGSA 1D2ZA 2BBZA 4IZAB 3KATA 2IB1A 4A2WA 2A5YB 1WH4A 1CWWA 2GF5A 1YGOA 2M5VA 1WMGA 2NSNA 4RHWA 4P4HA 4JUPA 2F1SA 1ICHA 2DBGA 2LWEA 4M9SA 2A9IA 4M9ZA 2LS7A 4O6XA 3YGSP 2G7RA 4N1JA 1PN5A 2L9MA 1CY5A 4EWIA
chains in the Genus database with same CATH superfamily
4O9LA 2L6AA 2DBDA 4JQWA 4N1LA 4IZ7B 4M9XA 2BBRA 4P4HI 1D2ZB 1E3YA 4A2QA 1DGNA 3MOPG 2N83A 2XV9A 2KM6A 2MJMA 4QOBA 2YVIA 1UCPA 1Z6TA 2D96A 2MS8A 1C15A 3CRDA 3EZQB 4UZ0A 2N80A 2DBHA 3J6JA 1FADA 2O71A 2N7ZA 2YU0A 1N3KA 4RHWE 4FH0A 2MPCA 4O7QA 4DWNA 2NZ7A 3MOPK 3T6PA 4D8OA 2OF5A 4F44A 2NAQA 4F42A 2N97A 3MOPA 3EZQA 2LWDA 2VGQA 2MS7A 2P1HA 3CL3A 2KN6A 2DO9A 4N1KA 2MB9A 2DBFA 2B1WA 4IZ5E 1A1WA 4O9FA 4NQKA 3LQRA 3QF2A 2OF5H 1DDFA 2HM2Q 2MN4A 2N00A 4ZBWA 3LQQA 4E9MA 4LWDA 2YQFA 1WXPA 2N1FA 1A1ZA 4I16A 1E41A 3J63A 1NGRA 3YGSC 2YGSA 1D2ZA 2BBZA 4IZAB 3KATA 2IB1A 4A2WA 2A5YB 1WH4A 1CWWA 2GF5A 1YGOA 2M5VA 1WMGA 2NSNA 4RHWA 4P4HA 4JUPA 2F1SA 1ICHA 2DBGA 2LWEA 4M9SA 2A9IA 4M9ZA 2LS7A 4O6XA 3YGSP 2G7RA 4N1JA 1PN5A 2L9MA 1CY5A 4EWIA
chains in the Genus database with same CATH topology
4O9LA 2L6AA 2DBDA 4JQWA 4N1LA 4IZ7B 4M9XA 2BBRA 4P4HI 1D2ZB 1E3YA 4A2QA 1DGNA 3MOPG 2N83A 2XV9A 2KM6A 2MJMA 4QOBA 2YVIA 1UCPA 1Z6TA 2D96A 2MS8A 1C15A 3CRDA 3EZQB 4UZ0A 2N80A 2DBHA 3J6JA 1FADA 2O71A 2N7ZA 2YU0A 1N3KA 4RHWE 4FH0A 2MPCA 4O7QA 4DWNA 2NZ7A 3MOPK 3T6PA 4D8OA 2OF5A 4F44A 2NAQA 4F42A 2N97A 3MOPA 3EZQA 2LWDA 2VGQA 2MS7A 2P1HA 3CL3A 2KN6A 2DO9A 4N1KA 2MB9A 2DBFA 2B1WA 4IZ5E 1A1WA 4O9FA 4NQKA 3LQRA 3QF2A 2OF5H 1DDFA 2HM2Q 2MN4A 2N00A 4ZBWA 3LQQA 4E9MA 4LWDA 2YQFA 1WXPA 2N1FA 1A1ZA 4I16A 1E41A 3J63A 1NGRA 3YGSC 2YGSA 1D2ZA 2BBZA 4IZAB 3KATA 2IB1A 4A2WA 2A5YB 1WH4A 1CWWA 2GF5A 1YGOA 2M5VA 1WMGA 2NSNA 4RHWA 4P4HA 4JUPA 2F1SA 1ICHA 2DBGA 2LWEA 4M9SA 2A9IA 4M9ZA 2LS7A 4O6XA 3YGSP 2G7RA 4N1JA 1PN5A 2L9MA 1CY5A 4EWIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O9L A;  2L6A A;  2DBD A;  4JQW A;  4N1L A;  4IZ7 B;  4M9X A;  2BBR A;  4P4H I;  1D2Z B;  1E3Y A;  4A2Q A;  1DGN A;  3MOP G;  2N83 A;  2KM6 A;  4QOB A;  2YVI A;  1UCP A;  1Z6T A;  2D96 A;  2MS8 A;  1C15 A;  3CRD A;  3EZQ B;  4UZ0 A;  2N80 A;  2DBH A;  3J6J A;  1FAD A;  2O71 A;  2N7Z A;  2YU0 A;  1N3K A;  4RHW E;  4FH0 A;  2MPC A;  4O7Q A;  4DWN A;  2NZ7 A;  3MOP K;  3T6P A;  4D8O A;  2OF5 A;  4F44 A;  2NAQ A;  4F42 A;  2N97 A;  3MOP A;  3EZQ A;  2LWD A;  2VGQ A;  2MS7 A;  2P1H A;  3CL3 A;  2KN6 A;  2DO9 A;  4N1K A;  2MB9 A;  2DBF A;  2B1W A;  4IZ5 E;  1A1W A;  4O9F A;  4NQK A;  3LQR A;  3QF2 A;  2OF5 H;  1DDF A;  2HM2 Q;  2MN4 A;  2N00 A;  4ZBW A;  3LQQ A;  4E9M A;  4LWD A;  2YQF A;  1WXP A;  2N1F A;  1A1Z A;  4I16 A;  1E41 A;  3J63 A;  1NGR A;  3YGS C;  2YGS A;  1D2Z A;  2BBZ A;  4IZA B;  3KAT A;  2IB1 A;  4A2W A;  2A5Y B;  1WH4 A;  1CWW A;  2GF5 A;  1YGO A;  2M5V A;  1WMG A;  2NSN A;  4RHW A;  4P4H A;  4JUP A;  2F1S A;  1ICH A;  2DBG A;  2LWE A;  4M9S A;  2A9I A;  4M9Z A;  2LS7 A;  4O6X A;  3YGS P;  2G7R A;  4N1J A;  1PN5 A;  2L9M A;  1CY5 A;  4EWI A; 
#chains in the Genus database with same CATH topology
 4O9L A;  2L6A A;  2DBD A;  4JQW A;  4N1L A;  4IZ7 B;  4M9X A;  2BBR A;  4P4H I;  1D2Z B;  1E3Y A;  4A2Q A;  1DGN A;  3MOP G;  2N83 A;  2XV9 A;  2KM6 A;  2MJM A;  4QOB A;  2YVI A;  1UCP A;  1Z6T A;  2D96 A;  2MS8 A;  1C15 A;  3CRD A;  3EZQ B;  4UZ0 A;  2N80 A;  2DBH A;  3J6J A;  1FAD A;  2O71 A;  2N7Z A;  2YU0 A;  1N3K A;  4RHW E;  4FH0 A;  2MPC A;  4O7Q A;  4DWN A;  2NZ7 A;  3MOP K;  3T6P A;  4D8O A;  2OF5 A;  4F44 A;  2NAQ A;  4F42 A;  2N97 A;  3MOP A;  3EZQ A;  2LWD A;  2VGQ A;  2MS7 A;  2P1H A;  3CL3 A;  2KN6 A;  2DO9 A;  4N1K A;  2MB9 A;  2DBF A;  2B1W A;  4IZ5 E;  1A1W A;  4O9F A;  4NQK A;  3LQR A;  3QF2 A;  2OF5 H;  1DDF A;  2HM2 Q;  2MN4 A;  2N00 A;  4ZBW A;  3LQQ A;  4E9M A;  4LWD A;  2YQF A;  1WXP A;  2N1F A;  1A1Z A;  4I16 A;  1E41 A;  3J63 A;  1NGR A;  3YGS C;  2YGS A;  1D2Z A;  2BBZ A;  4IZA B;  3KAT A;  2IB1 A;  4A2W A;  2A5Y B;  1WH4 A;  1CWW A;  2GF5 A;  1YGO A;  2M5V A;  1WMG A;  2NSN A;  4RHW A;  4P4H A;  4JUP A;  2F1S A;  1ICH A;  2DBG A;  2LWE A;  4M9S A;  2A9I A;  4M9Z A;  2LS7 A;  4O6X A;  3YGS P;  2G7R A;  4N1J A;  1PN5 A;  2L9M A;  1CY5 A;  4EWI A; 
#chains in the Genus database with same CATH homology
 4O9L A;  2L6A A;  2DBD A;  4JQW A;  4N1L A;  4IZ7 B;  4M9X A;  2BBR A;  4P4H I;  1D2Z B;  1E3Y A;  4A2Q A;  1DGN A;  3MOP G;  2N83 A;  2XV9 A;  2KM6 A;  2MJM A;  4QOB A;  2YVI A;  1UCP A;  1Z6T A;  2D96 A;  2MS8 A;  1C15 A;  3CRD A;  3EZQ B;  4UZ0 A;  2N80 A;  2DBH A;  3J6J A;  1FAD A;  2O71 A;  2N7Z A;  2YU0 A;  1N3K A;  4RHW E;  4FH0 A;  2MPC A;  4O7Q A;  4DWN A;  2NZ7 A;  3MOP K;  3T6P A;  4D8O A;  2OF5 A;  4F44 A;  2NAQ A;  4F42 A;  2N97 A;  3MOP A;  3EZQ A;  2LWD A;  2VGQ A;  2MS7 A;  2P1H A;  3CL3 A;  2KN6 A;  2DO9 A;  4N1K A;  2MB9 A;  2DBF A;  2B1W A;  4IZ5 E;  1A1W A;  4O9F A;  4NQK A;  3LQR A;  3QF2 A;  2OF5 H;  1DDF A;  2HM2 Q;  2MN4 A;  2N00 A;  4ZBW A;  3LQQ A;  4E9M A;  4LWD A;  2YQF A;  1WXP A;  2N1F A;  1A1Z A;  4I16 A;  1E41 A;  3J63 A;  1NGR A;  3YGS C;  2YGS A;  1D2Z A;  2BBZ A;  4IZA B;  3KAT A;  2IB1 A;  4A2W A;  2A5Y B;  1WH4 A;  1CWW A;  2GF5 A;  1YGO A;  2M5V A;  1WMG A;  2NSN A;  4RHW A;  4P4H A;  4JUP A;  2F1S A;  1ICH A;  2DBG A;  2LWE A;  4M9S A;  2A9I A;  4M9Z A;  2LS7 A;  4O6X A;  3YGS P;  2G7R A;  4N1J A;  1PN5 A;  2L9M A;  1CY5 A;  4EWI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...