1E3YA

Death domain from human fadd/mort1
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
104
structure length
104
Chain Sequence
GSHMGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEVQQARDLQNRSGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Apoptosis
molecule keywords FADD PROTEIN
publication title The Three-Dimensional Solution Structure and Dynamic Properties of the Human Fadd Death Domain
pubmed doi rcsb
source organism Homo sapiens
total genus 29
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2000-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 1e3yA00
4M9SA 4A2WA 4RHWE 2DBDA 2NZ7A 4EWIA 2OF5H 3YGSC 4NQKA 1CY5A 4FH0A 1C15A 4QOBA 1NGRA 2LWDA 4O9LA 2F1SA 4IZ5E 2A9IA 3EZQA 4N1LA 2N7ZA 3YGSP 3CRDA 2HM2Q 4D8OA 1A1WA 2N97A 3EZQB 4O7QA 2YU0A 4E9MA 2OF5A 4I16A 4O6XA 2MS8A 4N1JA 1CWWA 2MS7A 3MOPG 2MPCA 1E3YA 3J63A 3MOPA 1FADA 2MN4A 3LQQA 2IB1A 2DBGA 1D2ZA 4DWNA 4M9ZA 3LQRA 4N1KA 4P4HI 4IZ7B 2A5YB 3J6JA 1D2ZB 2GF5A 1DDFA 1E41A 4IZAB 2NSNA 2NAQA 1PN5A 4LWDA 2VGQA 2L6AA 2B1WA 2M5VA 2N00A 4M9XA 2N83A 4UZ0A 2KM6A 2LS7A 1WMGA 4JUPA 1UCPA 4O9FA 1WH4A 4RHWA 3MOPK 1A1ZA 2L9MA 1N3KA 2P1HA 4A2QA 2BBZA 4P4HA 3T6PA 2BBRA 2DO9A 2DBHA 2O71A 1ICHA 2DBFA 3CL3A 4F42A 1WXPA 3KATA 1YGOA 2N80A 2YGSA 2LWEA 4F44A 4JQWA 2YQFA 2G7RA 2N1FA 2KN6A 2D96A 4ZBWA 2YVIA 1DGNA 1Z6TA 2MB9A 3QF2A
chains in the Genus database with same CATH superfamily
4M9SA 4A2WA 4RHWE 2DBDA 2NZ7A 4EWIA 2OF5H 2MJMA 3YGSC 4NQKA 1CY5A 4FH0A 1C15A 4QOBA 1NGRA 2LWDA 4O9LA 2F1SA 4IZ5E 2A9IA 3EZQA 4N1LA 2N7ZA 3YGSP 3CRDA 2HM2Q 4D8OA 1A1WA 2N97A 3EZQB 4O7QA 2YU0A 4E9MA 2OF5A 4I16A 2XV9A 4O6XA 2MS8A 4N1JA 1CWWA 2MS7A 3MOPG 2MPCA 1E3YA 3J63A 3MOPA 1FADA 2MN4A 3LQQA 2IB1A 2DBGA 1D2ZA 4DWNA 4M9ZA 3LQRA 4N1KA 4P4HI 4IZ7B 2A5YB 3J6JA 1D2ZB 2GF5A 1DDFA 1E41A 4IZAB 2NSNA 2NAQA 1PN5A 4LWDA 2VGQA 2L6AA 2B1WA 2M5VA 2N00A 4M9XA 2N83A 4UZ0A 2KM6A 2LS7A 1WMGA 4JUPA 1UCPA 4O9FA 1WH4A 4RHWA 3MOPK 1A1ZA 2L9MA 1N3KA 2P1HA 4A2QA 2BBZA 4P4HA 3T6PA 2BBRA 2DO9A 2DBHA 2O71A 1ICHA 2DBFA 3CL3A 4F42A 1WXPA 3KATA 1YGOA 2N80A 2YGSA 2LWEA 4F44A 4JQWA 2YQFA 2G7RA 2N1FA 2KN6A 2D96A 4ZBWA 2YVIA 1DGNA 1Z6TA 2MB9A 3QF2A
chains in the Genus database with same CATH topology
4M9SA 4A2WA 4RHWE 2DBDA 2NZ7A 4EWIA 2OF5H 2MJMA 3YGSC 4NQKA 1CY5A 4FH0A 1C15A 4QOBA 1NGRA 2LWDA 4O9LA 2F1SA 4IZ5E 2A9IA 3EZQA 4N1LA 2N7ZA 3YGSP 3CRDA 2HM2Q 4D8OA 1A1WA 2N97A 3EZQB 4O7QA 2YU0A 4E9MA 2OF5A 4I16A 2XV9A 4O6XA 2MS8A 4N1JA 1CWWA 2MS7A 3MOPG 2MPCA 1E3YA 3J63A 3MOPA 1FADA 2MN4A 3LQQA 2IB1A 2DBGA 1D2ZA 4DWNA 4M9ZA 3LQRA 4N1KA 4P4HI 4IZ7B 2A5YB 3J6JA 1D2ZB 2GF5A 1DDFA 1E41A 4IZAB 2NSNA 2NAQA 1PN5A 4LWDA 2VGQA 2L6AA 2B1WA 2M5VA 2N00A 4M9XA 2N83A 4UZ0A 2KM6A 2LS7A 1WMGA 4JUPA 1UCPA 4O9FA 1WH4A 4RHWA 3MOPK 1A1ZA 2L9MA 1N3KA 2P1HA 4A2QA 2BBZA 4P4HA 3T6PA 2BBRA 2DO9A 2DBHA 2O71A 1ICHA 2DBFA 3CL3A 4F42A 1WXPA 3KATA 1YGOA 2N80A 2YGSA 2LWEA 4F44A 4JQWA 2YQFA 2G7RA 2N1FA 2KN6A 2D96A 4ZBWA 2YVIA 1DGNA 1Z6TA 2MB9A 3QF2A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4M9S A;  4A2W A;  4RHW E;  2DBD A;  2NZ7 A;  4EWI A;  2OF5 H;  3YGS C;  4NQK A;  1CY5 A;  4FH0 A;  1C15 A;  4QOB A;  1NGR A;  2LWD A;  4O9L A;  2F1S A;  4IZ5 E;  2A9I A;  3EZQ A;  4N1L A;  2N7Z A;  3YGS P;  3CRD A;  2HM2 Q;  4D8O A;  1A1W A;  2N97 A;  3EZQ B;  4O7Q A;  2YU0 A;  4E9M A;  2OF5 A;  4I16 A;  4O6X A;  2MS8 A;  4N1J A;  1CWW A;  2MS7 A;  3MOP G;  2MPC A;  1E3Y A;  3J63 A;  3MOP A;  1FAD A;  2MN4 A;  3LQQ A;  2IB1 A;  2DBG A;  1D2Z A;  4DWN A;  4M9Z A;  3LQR A;  4N1K A;  4P4H I;  4IZ7 B;  2A5Y B;  3J6J A;  1D2Z B;  2GF5 A;  1DDF A;  1E41 A;  4IZA B;  2NSN A;  2NAQ A;  1PN5 A;  4LWD A;  2VGQ A;  2L6A A;  2B1W A;  2M5V A;  2N00 A;  4M9X A;  2N83 A;  4UZ0 A;  2KM6 A;  2LS7 A;  1WMG A;  4JUP A;  1UCP A;  4O9F A;  1WH4 A;  4RHW A;  3MOP K;  1A1Z A;  2L9M A;  1N3K A;  2P1H A;  4A2Q A;  2BBZ A;  4P4H A;  3T6P A;  2BBR A;  2DO9 A;  2DBH A;  2O71 A;  1ICH A;  2DBF A;  3CL3 A;  4F42 A;  1WXP A;  3KAT A;  1YGO A;  2N80 A;  2YGS A;  2LWE A;  4F44 A;  4JQW A;  2YQF A;  2G7R A;  2N1F A;  2KN6 A;  2D96 A;  4ZBW A;  2YVI A;  1DGN A;  1Z6T A;  2MB9 A;  3QF2 A; 
#chains in the Genus database with same CATH topology
 4M9S A;  4A2W A;  4RHW E;  2DBD A;  2NZ7 A;  4EWI A;  2OF5 H;  2MJM A;  3YGS C;  4NQK A;  1CY5 A;  4FH0 A;  1C15 A;  4QOB A;  1NGR A;  2LWD A;  4O9L A;  2F1S A;  4IZ5 E;  2A9I A;  3EZQ A;  4N1L A;  2N7Z A;  3YGS P;  3CRD A;  2HM2 Q;  4D8O A;  1A1W A;  2N97 A;  3EZQ B;  4O7Q A;  2YU0 A;  4E9M A;  2OF5 A;  4I16 A;  2XV9 A;  4O6X A;  2MS8 A;  4N1J A;  1CWW A;  2MS7 A;  3MOP G;  2MPC A;  1E3Y A;  3J63 A;  3MOP A;  1FAD A;  2MN4 A;  3LQQ A;  2IB1 A;  2DBG A;  1D2Z A;  4DWN A;  4M9Z A;  3LQR A;  4N1K A;  4P4H I;  4IZ7 B;  2A5Y B;  3J6J A;  1D2Z B;  2GF5 A;  1DDF A;  1E41 A;  4IZA B;  2NSN A;  2NAQ A;  1PN5 A;  4LWD A;  2VGQ A;  2L6A A;  2B1W A;  2M5V A;  2N00 A;  4M9X A;  2N83 A;  4UZ0 A;  2KM6 A;  2LS7 A;  1WMG A;  4JUP A;  1UCP A;  4O9F A;  1WH4 A;  4RHW A;  3MOP K;  1A1Z A;  2L9M A;  1N3K A;  2P1H A;  4A2Q A;  2BBZ A;  4P4H A;  3T6P A;  2BBR A;  2DO9 A;  2DBH A;  2O71 A;  1ICH A;  2DBF A;  3CL3 A;  4F42 A;  1WXP A;  3KAT A;  1YGO A;  2N80 A;  2YGS A;  2LWE A;  4F44 A;  4JQW A;  2YQF A;  2G7R A;  2N1F A;  2KN6 A;  2D96 A;  4ZBW A;  2YVI A;  1DGN A;  1Z6T A;  2MB9 A;  3QF2 A; 
#chains in the Genus database with same CATH homology
 4M9S A;  4A2W A;  4RHW E;  2DBD A;  2NZ7 A;  4EWI A;  2OF5 H;  2MJM A;  3YGS C;  4NQK A;  1CY5 A;  4FH0 A;  1C15 A;  4QOB A;  1NGR A;  2LWD A;  4O9L A;  2F1S A;  4IZ5 E;  2A9I A;  3EZQ A;  4N1L A;  2N7Z A;  3YGS P;  3CRD A;  2HM2 Q;  4D8O A;  1A1W A;  2N97 A;  3EZQ B;  4O7Q A;  2YU0 A;  4E9M A;  2OF5 A;  4I16 A;  2XV9 A;  4O6X A;  2MS8 A;  4N1J A;  1CWW A;  2MS7 A;  3MOP G;  2MPC A;  1E3Y A;  3J63 A;  3MOP A;  1FAD A;  2MN4 A;  3LQQ A;  2IB1 A;  2DBG A;  1D2Z A;  4DWN A;  4M9Z A;  3LQR A;  4N1K A;  4P4H I;  4IZ7 B;  2A5Y B;  3J6J A;  1D2Z B;  2GF5 A;  1DDF A;  1E41 A;  4IZA B;  2NSN A;  2NAQ A;  1PN5 A;  4LWD A;  2VGQ A;  2L6A A;  2B1W A;  2M5V A;  2N00 A;  4M9X A;  2N83 A;  4UZ0 A;  2KM6 A;  2LS7 A;  1WMG A;  4JUP A;  1UCP A;  4O9F A;  1WH4 A;  4RHW A;  3MOP K;  1A1Z A;  2L9M A;  1N3K A;  2P1H A;  4A2Q A;  2BBZ A;  4P4H A;  3T6P A;  2BBR A;  2DO9 A;  2DBH A;  2O71 A;  1ICH A;  2DBF A;  3CL3 A;  4F42 A;  1WXP A;  3KAT A;  1YGO A;  2N80 A;  2YGS A;  2LWE A;  4F44 A;  4JQW A;  2YQF A;  2G7R A;  2N1F A;  2KN6 A;  2D96 A;  4ZBW A;  2YVI A;  1DGN A;  1Z6T A;  2MB9 A;  3QF2 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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