2BBZA

Crystal structure of mc159 reveals molecular mechanism of disc assembly and vflip inhibition
Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
190
structure length
190
Chain Sequence
SDSKEVPSLPFLRHLLEELDSHEDSLLLFLCHDAAPGCTTVTQALCSLSQQRKLTLAALVEMLYVLQRMDLLKSRFGLSKEGAEQLLGTSFLTRYRKLMVCVGEELDSSELRALRLFACNLNPSLSTALSESSRFVELVLALENVGLVSPSSVSVLADMLRTLRRLDLCQQLVEYEQQEQARYRYCYAAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (10-17)EMPTYAH5 (70-75)AH2 (22-31)TI1 (17-20)AH6 (95-102)TIV3 (32-35)AH3 (42-52)TIV6 (36-39)TIV7 (53-56)AH4 (57-67)TII1 (87-90)TIV8 (75-78)TI2 (80-83)TIV9 (82-85)TI4 (83-86)AH8 (136-146)TIV13 (103-106)AH10 (167-173)TIV12 (102-105)TIV15 (120-123)TIV16 (121-124)TI6 (123-126)TIV17 (124-127)TIV18 (125-128)AH11 (175-187)TIV22 (150-153)AH9 (154-161)TIV24 (187-190)TIV20 (127-130)TIV21 (131-134)3H1 (162-164)AH7 (109-120)TIV14 (104-107)Updating...
connected with : NaN
molecule tags Viral protein
source organism Molluscum contagiosum virus subtype 1
publication title Crystal structure of MC159 reveals molecular mechanism of DISC assembly and FLIP inhibition.
pubmed doi rcsb
molecule keywords Viral CASP8 and FADD-like apoptosis regulator
total genus 43
structure length 190
sequence length 190
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2005-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01335 DED Death effector domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2bbzA02
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2bbzA01
4O9FA 4A2QA 2D96A 3LQRA 2YVIA 2LWDA 2LS7A 1C15A 4O6XA 1CWWA 4M9ZA 4UZ0A 4DWNA 2MPCA 1A1WA 1E41A 4EWIA 4JQWA 1D2ZA 3EZQA 4P4HA 2G7RA 3KATA 3MOPA 3LQQA 2BBZA 3MOPG 3MOPK 2N7ZA 4NQKA 1N3KA 4E9MA 1NGRA 2A5YB 1PN5A 4IZ5E 2N80A 4IZ7B 4N1JA 2N1FA 4F42A 2MS8A 2B1WA 1DGNA 1Z6TA 3CL3A 1WMGA 2NAQA 2OF5H 2NZ7A 4LWDA 4A2WA 4RHWE 2L9MA 2P1HA 4P4HI 2YGSA 4O9LA 1E3YA 1ICHA 3QF2A 2HM2Q 2MN4A 2YU0A 2YQFA 2F1SA 1YGOA 1WH4A 4QOBA 4IZAB 2N97A 2BBRA 4ZBWA 2O71A 2GF5A 3J6JA 3YGSP 1CY5A 2DBDA 2DBHA 1D2ZB 2LWEA 2L6AA 4RHWA 4D8OA 2M5VA 4M9XA 4M9SA 2OF5A 1UCPA 1FADA 4N1KA 3T6PA 3CRDA 2IB1A 4JUPA 4FH0A 2N83A 3J63A 2MB9A 3YGSC 1A1ZA 2KN6A 1DDFA 4I16A 2DBFA 2NSNA 2MS7A 4F44A 2VGQA 4O7QA 2DBGA 1WXPA 4N1LA 2N00A 2KM6A 2A9IA 3EZQB 2DO9A
chains in the Genus database with same CATH superfamily
4O9FA 4A2QA 2D96A 3LQRA 2YVIA 2LWDA 2LS7A 1C15A 4O6XA 1CWWA 4M9ZA 4UZ0A 4DWNA 2MPCA 1A1WA 1E41A 4EWIA 4JQWA 1D2ZA 3EZQA 4P4HA 2G7RA 3KATA 3MOPA 3LQQA 2BBZA 3MOPG 3MOPK 2N7ZA 4NQKA 1N3KA 4E9MA 1NGRA 2A5YB 1PN5A 4IZ5E 2N80A 4IZ7B 4N1JA 2N1FA 4F42A 2MS8A 2B1WA 1DGNA 1Z6TA 3CL3A 1WMGA 2NAQA 2OF5H 2NZ7A 4LWDA 4A2WA 4RHWE 2L9MA 2P1HA 4P4HI 2YGSA 4O9LA 1E3YA 1ICHA 3QF2A 2HM2Q 2MN4A 2YU0A 2YQFA 2F1SA 1YGOA 1WH4A 4QOBA 4IZAB 2N97A 2BBRA 4ZBWA 2O71A 2GF5A 3J6JA 3YGSP 1CY5A 2DBDA 2DBHA 1D2ZB 2LWEA 2L6AA 4RHWA 4D8OA 2M5VA 4M9XA 4M9SA 2OF5A 1UCPA 1FADA 4N1KA 3T6PA 3CRDA 2IB1A 4JUPA 4FH0A 2N83A 3J63A 2MB9A 3YGSC 1A1ZA 2KN6A 1DDFA 4I16A 2DBFA 2NSNA 2MS7A 4F44A 2MJMA 2VGQA 4O7QA 2DBGA 2XV9A 1WXPA 4N1LA 2N00A 2KM6A 2A9IA 3EZQB 2DO9A
chains in the Genus database with same CATH topology
4O9FA 4A2QA 2D96A 3LQRA 2YVIA 2LWDA 2LS7A 1C15A 4O6XA 1CWWA 4M9ZA 4UZ0A 4DWNA 2MPCA 1A1WA 1E41A 4EWIA 4JQWA 1D2ZA 3EZQA 4P4HA 2G7RA 3KATA 3MOPA 3LQQA 2BBZA 3MOPG 3MOPK 2N7ZA 4NQKA 1N3KA 4E9MA 1NGRA 2A5YB 1PN5A 4IZ5E 2N80A 4IZ7B 4N1JA 2N1FA 4F42A 2MS8A 2B1WA 1DGNA 1Z6TA 3CL3A 1WMGA 2NAQA 2OF5H 2NZ7A 4LWDA 4A2WA 4RHWE 2L9MA 2P1HA 4P4HI 2YGSA 4O9LA 1E3YA 1ICHA 3QF2A 2HM2Q 2MN4A 2YU0A 2YQFA 2F1SA 1YGOA 1WH4A 4QOBA 4IZAB 2N97A 2BBRA 4ZBWA 2O71A 2GF5A 3J6JA 3YGSP 1CY5A 2DBDA 2DBHA 1D2ZB 2LWEA 2L6AA 4RHWA 4D8OA 2M5VA 4M9XA 4M9SA 2OF5A 1UCPA 1FADA 4N1KA 3T6PA 3CRDA 2IB1A 4JUPA 4FH0A 2N83A 3J63A 2MB9A 3YGSC 1A1ZA 2KN6A 1DDFA 4I16A 2DBFA 2NSNA 2MS7A 4F44A 2MJMA 2VGQA 4O7QA 2DBGA 2XV9A 1WXPA 4N1LA 2N00A 2KM6A 2A9IA 3EZQB 2DO9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O9F A;  4A2Q A;  2D96 A;  3LQR A;  2YVI A;  2LWD A;  2LS7 A;  1C15 A;  4O6X A;  1CWW A;  4M9Z A;  4UZ0 A;  4DWN A;  2MPC A;  1A1W A;  1E41 A;  4EWI A;  4JQW A;  1D2Z A;  3EZQ A;  4P4H A;  2G7R A;  3KAT A;  3MOP A;  3LQQ A;  2BBZ A;  3MOP G;  3MOP K;  2N7Z A;  4NQK A;  1N3K A;  4E9M A;  1NGR A;  2A5Y B;  1PN5 A;  4IZ5 E;  2N80 A;  4IZ7 B;  4N1J A;  2N1F A;  4F42 A;  2MS8 A;  2B1W A;  1DGN A;  1Z6T A;  3CL3 A;  1WMG A;  2NAQ A;  2OF5 H;  2NZ7 A;  4LWD A;  4A2W A;  4RHW E;  2L9M A;  2P1H A;  4P4H I;  2YGS A;  4O9L A;  1E3Y A;  1ICH A;  3QF2 A;  2HM2 Q;  2MN4 A;  2YU0 A;  2YQF A;  2F1S A;  1YGO A;  1WH4 A;  4QOB A;  4IZA B;  2N97 A;  2BBR A;  4ZBW A;  2O71 A;  2GF5 A;  3J6J A;  3YGS P;  1CY5 A;  2DBD A;  2DBH A;  1D2Z B;  2LWE A;  2L6A A;  4RHW A;  4D8O A;  2M5V A;  4M9X A;  4M9S A;  2OF5 A;  1UCP A;  1FAD A;  4N1K A;  3T6P A;  3CRD A;  2IB1 A;  4JUP A;  4FH0 A;  2N83 A;  3J63 A;  2MB9 A;  3YGS C;  1A1Z A;  2KN6 A;  1DDF A;  4I16 A;  2DBF A;  2NSN A;  2MS7 A;  4F44 A;  2VGQ A;  4O7Q A;  2DBG A;  1WXP A;  4N1L A;  2N00 A;  2KM6 A;  2A9I A;  3EZQ B;  2DO9 A; 
#chains in the Genus database with same CATH topology
 4O9F A;  4A2Q A;  2D96 A;  3LQR A;  2YVI A;  2LWD A;  2LS7 A;  1C15 A;  4O6X A;  1CWW A;  4M9Z A;  4UZ0 A;  4DWN A;  2MPC A;  1A1W A;  1E41 A;  4EWI A;  4JQW A;  1D2Z A;  3EZQ A;  4P4H A;  2G7R A;  3KAT A;  3MOP A;  3LQQ A;  2BBZ A;  3MOP G;  3MOP K;  2N7Z A;  4NQK A;  1N3K A;  4E9M A;  1NGR A;  2A5Y B;  1PN5 A;  4IZ5 E;  2N80 A;  4IZ7 B;  4N1J A;  2N1F A;  4F42 A;  2MS8 A;  2B1W A;  1DGN A;  1Z6T A;  3CL3 A;  1WMG A;  2NAQ A;  2OF5 H;  2NZ7 A;  4LWD A;  4A2W A;  4RHW E;  2L9M A;  2P1H A;  4P4H I;  2YGS A;  4O9L A;  1E3Y A;  1ICH A;  3QF2 A;  2HM2 Q;  2MN4 A;  2YU0 A;  2YQF A;  2F1S A;  1YGO A;  1WH4 A;  4QOB A;  4IZA B;  2N97 A;  2BBR A;  4ZBW A;  2O71 A;  2GF5 A;  3J6J A;  3YGS P;  1CY5 A;  2DBD A;  2DBH A;  1D2Z B;  2LWE A;  2L6A A;  4RHW A;  4D8O A;  2M5V A;  4M9X A;  4M9S A;  2OF5 A;  1UCP A;  1FAD A;  4N1K A;  3T6P A;  3CRD A;  2IB1 A;  4JUP A;  4FH0 A;  2N83 A;  3J63 A;  2MB9 A;  3YGS C;  1A1Z A;  2KN6 A;  1DDF A;  4I16 A;  2DBF A;  2NSN A;  2MS7 A;  4F44 A;  2MJM A;  2VGQ A;  4O7Q A;  2DBG A;  2XV9 A;  1WXP A;  4N1L A;  2N00 A;  2KM6 A;  2A9I A;  3EZQ B;  2DO9 A; 
#chains in the Genus database with same CATH homology
 4O9F A;  4A2Q A;  2D96 A;  3LQR A;  2YVI A;  2LWD A;  2LS7 A;  1C15 A;  4O6X A;  1CWW A;  4M9Z A;  4UZ0 A;  4DWN A;  2MPC A;  1A1W A;  1E41 A;  4EWI A;  4JQW A;  1D2Z A;  3EZQ A;  4P4H A;  2G7R A;  3KAT A;  3MOP A;  3LQQ A;  2BBZ A;  3MOP G;  3MOP K;  2N7Z A;  4NQK A;  1N3K A;  4E9M A;  1NGR A;  2A5Y B;  1PN5 A;  4IZ5 E;  2N80 A;  4IZ7 B;  4N1J A;  2N1F A;  4F42 A;  2MS8 A;  2B1W A;  1DGN A;  1Z6T A;  3CL3 A;  1WMG A;  2NAQ A;  2OF5 H;  2NZ7 A;  4LWD A;  4A2W A;  4RHW E;  2L9M A;  2P1H A;  4P4H I;  2YGS A;  4O9L A;  1E3Y A;  1ICH A;  3QF2 A;  2HM2 Q;  2MN4 A;  2YU0 A;  2YQF A;  2F1S A;  1YGO A;  1WH4 A;  4QOB A;  4IZA B;  2N97 A;  2BBR A;  4ZBW A;  2O71 A;  2GF5 A;  3J6J A;  3YGS P;  1CY5 A;  2DBD A;  2DBH A;  1D2Z B;  2LWE A;  2L6A A;  4RHW A;  4D8O A;  2M5V A;  4M9X A;  4M9S A;  2OF5 A;  1UCP A;  1FAD A;  4N1K A;  3T6P A;  3CRD A;  2IB1 A;  4JUP A;  4FH0 A;  2N83 A;  3J63 A;  2MB9 A;  3YGS C;  1A1Z A;  2KN6 A;  1DDF A;  4I16 A;  2DBF A;  2NSN A;  2MS7 A;  4F44 A;  2MJM A;  2VGQ A;  4O7Q A;  2DBG A;  2XV9 A;  1WXP A;  4N1L A;  2N00 A;  2KM6 A;  2A9I A;  3EZQ B;  2DO9 A; 
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