2DO9A

Solution structure of the pyrin/paad-dapin domain in mouse nalp10 (nacht, leucine rich repeat and pyd containing 10)
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
115
structure length
115
Chain Sequence
GSSGSSGMALARANSPQEALLWALNDLEENSFKTLKFHLRDVTQFHLARGELESLSQVDLASKLISMYGAQEAVRVVSRSLLAMNLMELVDYLNQVCLNDYREIYREHVSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH5 (87-95)TVIII1 (9-12)AH1 (16-26)EMPTYAH3 (57-68)O1 (46-48)TI'1 (48-51)3H1 (52-54)TIV2 (104-107)TIV3 (108-111)TIV4 (111-114)AH4 (70-84)AH2 (29-43)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Mus musculus
publication title Solution structure of the Pyrin/PAAD-DAPIN domain in mouse NALP10 (NACHT, leucine rich repeat and PYD containing 10)
rcsb
molecule keywords NACHT-, LRR- and PYD-containing protein 10
total genus 22
structure length 115
sequence length 115
ec nomenclature
pdb deposition date 2006-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02758 PYRIN PAAD/DAPIN/Pyrin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2do9A01
2LS7A 2YVIA 3KATA 2DBHA 2A9IA 2KN6A 3YGSC 2L9MA 4N1KA 2N80A 2D96A 2HM2Q 4A2QA 1DDFA 2NAQA 2MS8A 2N00A 3QF2A 2L6AA 3MOPK 4O9FA 2YU0A 1ICHA 1NGRA 1DGNA 4F42A 4DWNA 4ZBWA 3LQQA 2F1SA 4N1LA 2MN4A 2OF5H 1WMGA 1YGOA 1Z6TA 4F44A 2DBGA 2NSNA 4UZ0A 2MS7A 4FH0A 3CL3A 4IZ7B 2KM6A 4NQKA 4A2WA 1UCPA 2M5VA 3LQRA 2MB9A 1A1ZA 2DBDA 4P4HA 3MOPA 4JQWA 1FADA 2YQFA 3EZQB 2P1HA 3EZQA 2OF5A 4RHWA 4M9XA 4M9SA 2LWDA 2B1WA 4E9MA 1CY5A 2N1FA 1E3YA 1A1WA 2YGSA 4P4HI 4IZAB 1CWWA 2LWEA 4M9ZA 3YGSP 2N97A 1N3KA 1WXPA 2O71A 4EWIA 3J6JA 2VGQA 3T6PA 4RHWE 2NZ7A 4I16A 4O9LA 4IZ5E 4QOBA 2N7ZA 2N83A 1C15A 1E41A 4N1JA 2BBRA 3J63A 2G7RA 4LWDA 1PN5A 2A5YB 4D8OA 4O7QA 2BBZA 4O6XA 2DO9A 2GF5A 1D2ZB 2MPCA 2IB1A 3CRDA 4JUPA 3MOPG 1D2ZA 2DBFA 1WH4A
chains in the Genus database with same CATH superfamily
2LS7A 2YVIA 3KATA 2DBHA 2A9IA 2KN6A 3YGSC 2L9MA 4N1KA 2N80A 2D96A 2HM2Q 4A2QA 2MJMA 1DDFA 2NAQA 2MS8A 2N00A 3QF2A 2L6AA 3MOPK 4O9FA 2YU0A 1ICHA 1NGRA 1DGNA 4F42A 4DWNA 4ZBWA 3LQQA 2F1SA 4N1LA 2MN4A 2OF5H 1WMGA 1YGOA 1Z6TA 4F44A 2DBGA 2NSNA 4UZ0A 2MS7A 4FH0A 3CL3A 4IZ7B 2KM6A 4NQKA 4A2WA 1UCPA 2M5VA 3LQRA 2MB9A 1A1ZA 2DBDA 4P4HA 3MOPA 4JQWA 1FADA 2YQFA 3EZQB 2P1HA 3EZQA 2OF5A 4RHWA 4M9XA 4M9SA 2LWDA 2B1WA 4E9MA 1CY5A 2N1FA 1E3YA 1A1WA 2YGSA 4P4HI 4IZAB 1CWWA 2LWEA 4M9ZA 3YGSP 2N97A 1N3KA 1WXPA 2O71A 4EWIA 3J6JA 2VGQA 3T6PA 4RHWE 2NZ7A 4I16A 4O9LA 4IZ5E 4QOBA 2N7ZA 2XV9A 2N83A 1C15A 1E41A 4N1JA 2BBRA 3J63A 2G7RA 4LWDA 1PN5A 2A5YB 4D8OA 4O7QA 2BBZA 4O6XA 2DO9A 2GF5A 1D2ZB 2MPCA 2IB1A 3CRDA 4JUPA 3MOPG 1D2ZA 2DBFA 1WH4A
chains in the Genus database with same CATH topology
2LS7A 2YVIA 3KATA 2DBHA 2A9IA 2KN6A 3YGSC 2L9MA 4N1KA 2N80A 2D96A 2HM2Q 4A2QA 2MJMA 1DDFA 2NAQA 2MS8A 2N00A 3QF2A 2L6AA 3MOPK 4O9FA 2YU0A 1ICHA 1NGRA 1DGNA 4F42A 4DWNA 4ZBWA 3LQQA 2F1SA 4N1LA 2MN4A 2OF5H 1WMGA 1YGOA 1Z6TA 4F44A 2DBGA 2NSNA 4UZ0A 2MS7A 4FH0A 3CL3A 4IZ7B 2KM6A 4NQKA 4A2WA 1UCPA 2M5VA 3LQRA 2MB9A 1A1ZA 2DBDA 4P4HA 3MOPA 4JQWA 1FADA 2YQFA 3EZQB 2P1HA 3EZQA 2OF5A 4RHWA 4M9XA 4M9SA 2LWDA 2B1WA 4E9MA 1CY5A 2N1FA 1E3YA 1A1WA 2YGSA 4P4HI 4IZAB 1CWWA 2LWEA 4M9ZA 3YGSP 2N97A 1N3KA 1WXPA 2O71A 4EWIA 3J6JA 2VGQA 3T6PA 4RHWE 2NZ7A 4I16A 4O9LA 4IZ5E 4QOBA 2N7ZA 2XV9A 2N83A 1C15A 1E41A 4N1JA 2BBRA 3J63A 2G7RA 4LWDA 1PN5A 2A5YB 4D8OA 4O7QA 2BBZA 4O6XA 2DO9A 2GF5A 1D2ZB 2MPCA 2IB1A 3CRDA 4JUPA 3MOPG 1D2ZA 2DBFA 1WH4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LS7 A;  2YVI A;  3KAT A;  2DBH A;  2A9I A;  2KN6 A;  3YGS C;  2L9M A;  4N1K A;  2N80 A;  2D96 A;  2HM2 Q;  4A2Q A;  1DDF A;  2NAQ A;  2MS8 A;  2N00 A;  3QF2 A;  2L6A A;  3MOP K;  4O9F A;  2YU0 A;  1ICH A;  1NGR A;  1DGN A;  4F42 A;  4DWN A;  4ZBW A;  3LQQ A;  2F1S A;  4N1L A;  2MN4 A;  2OF5 H;  1WMG A;  1YGO A;  1Z6T A;  4F44 A;  2DBG A;  2NSN A;  4UZ0 A;  2MS7 A;  4FH0 A;  3CL3 A;  4IZ7 B;  2KM6 A;  4NQK A;  4A2W A;  1UCP A;  2M5V A;  3LQR A;  2MB9 A;  1A1Z A;  2DBD A;  4P4H A;  3MOP A;  4JQW A;  1FAD A;  2YQF A;  3EZQ B;  2P1H A;  3EZQ A;  2OF5 A;  4RHW A;  4M9X A;  4M9S A;  2LWD A;  2B1W A;  4E9M A;  1CY5 A;  2N1F A;  1E3Y A;  1A1W A;  2YGS A;  4P4H I;  4IZA B;  1CWW A;  2LWE A;  4M9Z A;  3YGS P;  2N97 A;  1N3K A;  1WXP A;  2O71 A;  4EWI A;  3J6J A;  2VGQ A;  3T6P A;  4RHW E;  2NZ7 A;  4I16 A;  4O9L A;  4IZ5 E;  4QOB A;  2N7Z A;  2N83 A;  1C15 A;  1E41 A;  4N1J A;  2BBR A;  3J63 A;  2G7R A;  4LWD A;  1PN5 A;  2A5Y B;  4D8O A;  4O7Q A;  2BBZ A;  4O6X A;  2DO9 A;  2GF5 A;  1D2Z B;  2MPC A;  2IB1 A;  3CRD A;  4JUP A;  3MOP G;  1D2Z A;  2DBF A;  1WH4 A; 
#chains in the Genus database with same CATH topology
 2LS7 A;  2YVI A;  3KAT A;  2DBH A;  2A9I A;  2KN6 A;  3YGS C;  2L9M A;  4N1K A;  2N80 A;  2D96 A;  2HM2 Q;  4A2Q A;  2MJM A;  1DDF A;  2NAQ A;  2MS8 A;  2N00 A;  3QF2 A;  2L6A A;  3MOP K;  4O9F A;  2YU0 A;  1ICH A;  1NGR A;  1DGN A;  4F42 A;  4DWN A;  4ZBW A;  3LQQ A;  2F1S A;  4N1L A;  2MN4 A;  2OF5 H;  1WMG A;  1YGO A;  1Z6T A;  4F44 A;  2DBG A;  2NSN A;  4UZ0 A;  2MS7 A;  4FH0 A;  3CL3 A;  4IZ7 B;  2KM6 A;  4NQK A;  4A2W A;  1UCP A;  2M5V A;  3LQR A;  2MB9 A;  1A1Z A;  2DBD A;  4P4H A;  3MOP A;  4JQW A;  1FAD A;  2YQF A;  3EZQ B;  2P1H A;  3EZQ A;  2OF5 A;  4RHW A;  4M9X A;  4M9S A;  2LWD A;  2B1W A;  4E9M A;  1CY5 A;  2N1F A;  1E3Y A;  1A1W A;  2YGS A;  4P4H I;  4IZA B;  1CWW A;  2LWE A;  4M9Z A;  3YGS P;  2N97 A;  1N3K A;  1WXP A;  2O71 A;  4EWI A;  3J6J A;  2VGQ A;  3T6P A;  4RHW E;  2NZ7 A;  4I16 A;  4O9L A;  4IZ5 E;  4QOB A;  2N7Z A;  2XV9 A;  2N83 A;  1C15 A;  1E41 A;  4N1J A;  2BBR A;  3J63 A;  2G7R A;  4LWD A;  1PN5 A;  2A5Y B;  4D8O A;  4O7Q A;  2BBZ A;  4O6X A;  2DO9 A;  2GF5 A;  1D2Z B;  2MPC A;  2IB1 A;  3CRD A;  4JUP A;  3MOP G;  1D2Z A;  2DBF A;  1WH4 A; 
#chains in the Genus database with same CATH homology
 2LS7 A;  2YVI A;  3KAT A;  2DBH A;  2A9I A;  2KN6 A;  3YGS C;  2L9M A;  4N1K A;  2N80 A;  2D96 A;  2HM2 Q;  4A2Q A;  2MJM A;  1DDF A;  2NAQ A;  2MS8 A;  2N00 A;  3QF2 A;  2L6A A;  3MOP K;  4O9F A;  2YU0 A;  1ICH A;  1NGR A;  1DGN A;  4F42 A;  4DWN A;  4ZBW A;  3LQQ A;  2F1S A;  4N1L A;  2MN4 A;  2OF5 H;  1WMG A;  1YGO A;  1Z6T A;  4F44 A;  2DBG A;  2NSN A;  4UZ0 A;  2MS7 A;  4FH0 A;  3CL3 A;  4IZ7 B;  2KM6 A;  4NQK A;  4A2W A;  1UCP A;  2M5V A;  3LQR A;  2MB9 A;  1A1Z A;  2DBD A;  4P4H A;  3MOP A;  4JQW A;  1FAD A;  2YQF A;  3EZQ B;  2P1H A;  3EZQ A;  2OF5 A;  4RHW A;  4M9X A;  4M9S A;  2LWD A;  2B1W A;  4E9M A;  1CY5 A;  2N1F A;  1E3Y A;  1A1W A;  2YGS A;  4P4H I;  4IZA B;  1CWW A;  2LWE A;  4M9Z A;  3YGS P;  2N97 A;  1N3K A;  1WXP A;  2O71 A;  4EWI A;  3J6J A;  2VGQ A;  3T6P A;  4RHW E;  2NZ7 A;  4I16 A;  4O9L A;  4IZ5 E;  4QOB A;  2N7Z A;  2XV9 A;  2N83 A;  1C15 A;  1E41 A;  4N1J A;  2BBR A;  3J63 A;  2G7R A;  4LWD A;  1PN5 A;  2A5Y B;  4D8O A;  4O7Q A;  2BBZ A;  4O6X A;  2DO9 A;  2GF5 A;  1D2Z B;  2MPC A;  2IB1 A;  3CRD A;  4JUP A;  3MOP G;  1D2Z A;  2DBF A;  1WH4 A; 
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