2HM2Q

Solution structure of asc2
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
89
structure length
89
Chain Sequence
MGTKREAILKVLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASYYEDYAAELVVAVLRDMRMLEEAARLQRAA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-13)AH4 (62-76)AH2 (17-27)TIV3 (43-46)TIV2 (33-36)3H1 (41-43)EMPTYAH3 (49-60)AH5 (79-87)TIV1 (27-30)O1 (87-89)Updating...
connected with : NaN
molecule tags Apoptosis
source organism Homo sapiens
publication title Structure and dynamics of ASC2, a pyrin domain-only protein that regulates inflammatory signaling
pubmed doi rcsb
molecule keywords Pyrin-only protein 1
total genus 27
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Q PF02758 PYRIN PAAD/DAPIN/Pyrin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2hm2Q00
2NAQA 2D96A 1A1WA 2F1SA 2BBRA 2NZ7A 2HM2Q 2KN6A 1N3KA 4QOBA 4N1KA 1CWWA 3EZQB 4N1LA 3YGSP 4UZ0A 2OF5A 3EZQA 3T6PA 2OF5H 1WXPA 3MOPK 3LQRA 4N1JA 3QF2A 2LWEA 4D8OA 2MPCA 4A2QA 4IZ7B 1C15A 1A1ZA 2A5YB 2KM6A 3MOPG 4M9ZA 3KATA 2N00A 4M9XA 1D2ZB 2A9IA 1E3YA 2N97A 3J63A 1WMGA 1D2ZA 4EWIA 4P4HI 3MOPA 2LS7A 1YGOA 2VGQA 4IZ5E 1NGRA 1WH4A 2P1HA 4IZAB 4P4HA 1E41A 1DDFA 3LQQA 4F42A 2N1FA 2O71A 4O9FA 4NQKA 2MB9A 2L6AA 1PN5A 2MS8A 2DBGA 2NSNA 2BBZA 2DBFA 3CL3A 4RHWE 4O7QA 4M9SA 4O9LA 4RHWA 1DGNA 2IB1A 1ICHA 2YQFA 3YGSC 3J6JA 2MN4A 4DWNA 2YVIA 2MS7A 2N83A 2YGSA 2B1WA 2G7RA 4JUPA 4E9MA 2YU0A 2N80A 1CY5A 4ZBWA 1UCPA 2DO9A 4LWDA 2L9MA 1Z6TA 2GF5A 4JQWA 4O6XA 2LWDA 4F44A 2DBDA 2N7ZA 4A2WA 2DBHA 2M5VA 3CRDA 1FADA 4I16A 4FH0A
chains in the Genus database with same CATH superfamily
2NAQA 2D96A 1A1WA 2F1SA 2BBRA 2NZ7A 2HM2Q 2KN6A 1N3KA 4QOBA 4N1KA 1CWWA 3EZQB 4N1LA 3YGSP 4UZ0A 2OF5A 3EZQA 3T6PA 2OF5H 1WXPA 3MOPK 3LQRA 4N1JA 2LWEA 3QF2A 4D8OA 2MPCA 4A2QA 4IZ7B 1C15A 1A1ZA 2A5YB 2KM6A 3MOPG 4M9ZA 3KATA 2N00A 4M9XA 1D2ZB 2A9IA 1E3YA 2N97A 3J63A 1WMGA 1D2ZA 4EWIA 4P4HI 3MOPA 2LS7A 1YGOA 2VGQA 4IZ5E 1NGRA 1WH4A 2P1HA 4IZAB 4P4HA 1E41A 1DDFA 3LQQA 4F42A 2N1FA 2O71A 4O9FA 4NQKA 2MB9A 2L6AA 1PN5A 2MS8A 2DBGA 2NSNA 2BBZA 2DBFA 3CL3A 4RHWE 4O7QA 4M9SA 4O9LA 4RHWA 1DGNA 2IB1A 1ICHA 2YQFA 3YGSC 3J6JA 2MN4A 4DWNA 2YVIA 2MS7A 2N83A 2YGSA 2B1WA 2G7RA 4JUPA 4E9MA 2YU0A 2N80A 1CY5A 4ZBWA 2XV9A 1UCPA 2DO9A 4LWDA 2L9MA 1Z6TA 2GF5A 4JQWA 4O6XA 2LWDA 4F44A 2DBDA 2N7ZA 4A2WA 2DBHA 2M5VA 2MJMA 3CRDA 1FADA 4I16A 4FH0A
chains in the Genus database with same CATH topology
2NAQA 2D96A 1A1WA 2F1SA 2BBRA 2NZ7A 2HM2Q 2KN6A 1N3KA 4QOBA 4N1KA 1CWWA 3EZQB 4N1LA 3YGSP 4UZ0A 2OF5A 3EZQA 3T6PA 2OF5H 1WXPA 3MOPK 3LQRA 4N1JA 2LWEA 3QF2A 4D8OA 2MPCA 4A2QA 4IZ7B 1C15A 1A1ZA 2A5YB 2KM6A 3MOPG 4M9ZA 3KATA 2N00A 4M9XA 1D2ZB 2A9IA 1E3YA 2N97A 3J63A 1WMGA 1D2ZA 4EWIA 4P4HI 3MOPA 2LS7A 1YGOA 2VGQA 4IZ5E 1NGRA 1WH4A 2P1HA 4IZAB 4P4HA 1E41A 1DDFA 3LQQA 4F42A 2N1FA 2O71A 4O9FA 4NQKA 2MB9A 2L6AA 1PN5A 2MS8A 2DBGA 2NSNA 2BBZA 2DBFA 3CL3A 4RHWE 4O7QA 4M9SA 4O9LA 4RHWA 1DGNA 2IB1A 1ICHA 2YQFA 3YGSC 3J6JA 2MN4A 4DWNA 2YVIA 2MS7A 2N83A 2YGSA 2B1WA 2G7RA 4JUPA 4E9MA 2YU0A 2N80A 1CY5A 4ZBWA 2XV9A 1UCPA 2DO9A 4LWDA 2L9MA 1Z6TA 2GF5A 4JQWA 4O6XA 2LWDA 4F44A 2DBDA 2N7ZA 4A2WA 2DBHA 2M5VA 2MJMA 3CRDA 1FADA 4I16A 4FH0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NAQ A;  2D96 A;  1A1W A;  2F1S A;  2BBR A;  2NZ7 A;  2HM2 Q;  2KN6 A;  1N3K A;  4QOB A;  4N1K A;  1CWW A;  3EZQ B;  4N1L A;  3YGS P;  4UZ0 A;  2OF5 A;  3EZQ A;  3T6P A;  2OF5 H;  1WXP A;  3MOP K;  3LQR A;  4N1J A;  3QF2 A;  2LWE A;  4D8O A;  2MPC A;  4A2Q A;  4IZ7 B;  1C15 A;  1A1Z A;  2A5Y B;  2KM6 A;  3MOP G;  4M9Z A;  3KAT A;  2N00 A;  4M9X A;  1D2Z B;  2A9I A;  1E3Y A;  2N97 A;  3J63 A;  1WMG A;  1D2Z A;  4EWI A;  4P4H I;  3MOP A;  2LS7 A;  1YGO A;  2VGQ A;  4IZ5 E;  1NGR A;  1WH4 A;  2P1H A;  4IZA B;  4P4H A;  1E41 A;  1DDF A;  3LQQ A;  4F42 A;  2N1F A;  2O71 A;  4O9F A;  4NQK A;  2MB9 A;  2L6A A;  1PN5 A;  2MS8 A;  2DBG A;  2NSN A;  2BBZ A;  2DBF A;  3CL3 A;  4RHW E;  4O7Q A;  4M9S A;  4O9L A;  4RHW A;  1DGN A;  2IB1 A;  1ICH A;  2YQF A;  3YGS C;  3J6J A;  2MN4 A;  4DWN A;  2YVI A;  2MS7 A;  2N83 A;  2YGS A;  2B1W A;  2G7R A;  4JUP A;  4E9M A;  2YU0 A;  2N80 A;  1CY5 A;  4ZBW A;  1UCP A;  2DO9 A;  4LWD A;  2L9M A;  1Z6T A;  2GF5 A;  4JQW A;  4O6X A;  2LWD A;  4F44 A;  2DBD A;  2N7Z A;  4A2W A;  2DBH A;  2M5V A;  3CRD A;  1FAD A;  4I16 A;  4FH0 A; 
#chains in the Genus database with same CATH topology
 2NAQ A;  2D96 A;  1A1W A;  2F1S A;  2BBR A;  2NZ7 A;  2HM2 Q;  2KN6 A;  1N3K A;  4QOB A;  4N1K A;  1CWW A;  3EZQ B;  4N1L A;  3YGS P;  4UZ0 A;  2OF5 A;  3EZQ A;  3T6P A;  2OF5 H;  1WXP A;  3MOP K;  3LQR A;  4N1J A;  2LWE A;  3QF2 A;  4D8O A;  2MPC A;  4A2Q A;  4IZ7 B;  1C15 A;  1A1Z A;  2A5Y B;  2KM6 A;  3MOP G;  4M9Z A;  3KAT A;  2N00 A;  4M9X A;  1D2Z B;  2A9I A;  1E3Y A;  2N97 A;  3J63 A;  1WMG A;  1D2Z A;  4EWI A;  4P4H I;  3MOP A;  2LS7 A;  1YGO A;  2VGQ A;  4IZ5 E;  1NGR A;  1WH4 A;  2P1H A;  4IZA B;  4P4H A;  1E41 A;  1DDF A;  3LQQ A;  4F42 A;  2N1F A;  2O71 A;  4O9F A;  4NQK A;  2MB9 A;  2L6A A;  1PN5 A;  2MS8 A;  2DBG A;  2NSN A;  2BBZ A;  2DBF A;  3CL3 A;  4RHW E;  4O7Q A;  4M9S A;  4O9L A;  4RHW A;  1DGN A;  2IB1 A;  1ICH A;  2YQF A;  3YGS C;  3J6J A;  2MN4 A;  4DWN A;  2YVI A;  2MS7 A;  2N83 A;  2YGS A;  2B1W A;  2G7R A;  4JUP A;  4E9M A;  2YU0 A;  2N80 A;  1CY5 A;  4ZBW A;  2XV9 A;  1UCP A;  2DO9 A;  4LWD A;  2L9M A;  1Z6T A;  2GF5 A;  4JQW A;  4O6X A;  2LWD A;  4F44 A;  2DBD A;  2N7Z A;  4A2W A;  2DBH A;  2M5V A;  2MJM A;  3CRD A;  1FAD A;  4I16 A;  4FH0 A; 
#chains in the Genus database with same CATH homology
 2NAQ A;  2D96 A;  1A1W A;  2F1S A;  2BBR A;  2NZ7 A;  2HM2 Q;  2KN6 A;  1N3K A;  4QOB A;  4N1K A;  1CWW A;  3EZQ B;  4N1L A;  3YGS P;  4UZ0 A;  2OF5 A;  3EZQ A;  3T6P A;  2OF5 H;  1WXP A;  3MOP K;  3LQR A;  4N1J A;  2LWE A;  3QF2 A;  4D8O A;  2MPC A;  4A2Q A;  4IZ7 B;  1C15 A;  1A1Z A;  2A5Y B;  2KM6 A;  3MOP G;  4M9Z A;  3KAT A;  2N00 A;  4M9X A;  1D2Z B;  2A9I A;  1E3Y A;  2N97 A;  3J63 A;  1WMG A;  1D2Z A;  4EWI A;  4P4H I;  3MOP A;  2LS7 A;  1YGO A;  2VGQ A;  4IZ5 E;  1NGR A;  1WH4 A;  2P1H A;  4IZA B;  4P4H A;  1E41 A;  1DDF A;  3LQQ A;  4F42 A;  2N1F A;  2O71 A;  4O9F A;  4NQK A;  2MB9 A;  2L6A A;  1PN5 A;  2MS8 A;  2DBG A;  2NSN A;  2BBZ A;  2DBF A;  3CL3 A;  4RHW E;  4O7Q A;  4M9S A;  4O9L A;  4RHW A;  1DGN A;  2IB1 A;  1ICH A;  2YQF A;  3YGS C;  3J6J A;  2MN4 A;  4DWN A;  2YVI A;  2MS7 A;  2N83 A;  2YGS A;  2B1W A;  2G7R A;  4JUP A;  4E9M A;  2YU0 A;  2N80 A;  1CY5 A;  4ZBW A;  2XV9 A;  1UCP A;  2DO9 A;  4LWD A;  2L9M A;  1Z6T A;  2GF5 A;  4JQW A;  4O6X A;  2LWD A;  4F44 A;  2DBD A;  2N7Z A;  4A2W A;  2DBH A;  2M5V A;  2MJM A;  3CRD A;  1FAD A;  4I16 A;  4FH0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.