The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
35
|
sequence length |
96
|
structure length |
96
|
Chain Sequence |
KKIEKLEEYRLLLKRLQPEFKTRIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and Dynamics of the Second CARD of Human RIG-I Provide Mechanistic Insights into Regulation of RIG-I Activation.
pubmed doi rcsb |
| molecule tags |
Signaling protein
|
| source organism |
Homo sapiens
|
| molecule keywords |
Probable ATP-dependent RNA helicase DDX58
|
| total genus |
35
|
| structure length |
96
|
| sequence length |
96
|
| ec nomenclature |
ec
3.6.4.13: RNA helicase. |
| pdb deposition date | 2012-07-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16739 | CARD_2 | Caspase recruitment domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Death Domain, Fas | Death Domain, Fas |
#chains in the Genus database with same CATH superfamily 4IZA B; 4O9L A; 2G7R A; 4M9S A; 1E41 A; 3YGS C; 2L9M A; 4F44 A; 2N97 A; 2LWD A; 3LQR A; 1FAD A; 2GF5 A; 2DO9 A; 3MOP G; 2YU0 A; 1Z6T A; 3CRD A; 2DBF A; 1PN5 A; 3EZQ A; 2D96 A; 2N00 A; 1CY5 A; 4UZ0 A; 2MN4 A; 2NSN A; 3J6J A; 2N80 A; 4IZ5 E; 4JUP A; 2MS8 A; 4N1K A; 2OF5 H; 2LS7 A; 3KAT A; 4P4H A; 4RHW A; 3CL3 A; 2O71 A; 3YGS P; 2N7Z A; 3MOP K; 1DDF A; 2B1W A; 2MB9 A; 4RHW E; 4EWI A; 1WH4 A; 1N3K A; 2HM2 Q; 3T6P A; 4F42 A; 1D2Z A; 2OF5 A; 2DBG A; 2KN6 A; 4JQW A; 1C15 A; 1DGN A; 4E9M A; 1NGR A; 4I16 A; 2N1F A; 4QOB A; 1A1Z A; 4O9F A; 2DBH A; 3EZQ B; 3QF2 A; 4DWN A; 2NAQ A; 3J63 A; 1YGO A; 4IZ7 B; 2MPC A; 4A2Q A; 1UCP A; 4LWD A; 4O7Q A; 2DBD A; 3MOP A; 4ZBW A; 2YQF A; 2LWE A; 2YVI A; 4A2W A; 4NQK A; 1WMG A; 2N83 A; 4M9Z A; 2NZ7 A; 4P4H I; 2P1H A; 2M5V A; 4FH0 A; 4O6X A; 2VGQ A; 1ICH A; 1A1W A; 4N1J A; 4D8O A; 2A9I A; 1D2Z B; 2BBZ A; 2MS7 A; 4M9X A; 2YGS A; 2L6A A; 2BBR A; 2F1S A; 1E3Y A; 2KM6 A; 2A5Y B; 1WXP A; 1CWW A; 3LQQ A; 2IB1 A; 4N1L A; #chains in the Genus database with same CATH topology 4IZA B; 4O9L A; 2G7R A; 4M9S A; 1E41 A; 3YGS C; 2L9M A; 4F44 A; 2N97 A; 2LWD A; 3LQR A; 1FAD A; 2GF5 A; 2DO9 A; 3MOP G; 2YU0 A; 1Z6T A; 3CRD A; 2DBF A; 1PN5 A; 3EZQ A; 2D96 A; 2N00 A; 1CY5 A; 4UZ0 A; 2MN4 A; 2NSN A; 3J6J A; 2N80 A; 2XV9 A; 2MJM A; 4IZ5 E; 4JUP A; 2MS8 A; 4N1K A; 2OF5 H; 2LS7 A; 3KAT A; 4P4H A; 4RHW A; 3CL3 A; 2O71 A; 3YGS P; 2N7Z A; 3MOP K; 1DDF A; 2B1W A; 2MB9 A; 4RHW E; 4EWI A; 1WH4 A; 1N3K A; 2HM2 Q; 3T6P A; 4F42 A; 1D2Z A; 2OF5 A; 2DBG A; 2KN6 A; 4JQW A; 1C15 A; 1DGN A; 4E9M A; 1NGR A; 4I16 A; 2N1F A; 4QOB A; 1A1Z A; 4O9F A; 2DBH A; 3EZQ B; 3QF2 A; 4DWN A; 2NAQ A; 3J63 A; 1YGO A; 4IZ7 B; 2MPC A; 4A2Q A; 1UCP A; 4LWD A; 4O7Q A; 2DBD A; 3MOP A; 4ZBW A; 2YQF A; 2LWE A; 2YVI A; 4A2W A; 4NQK A; 1WMG A; 2N83 A; 4M9Z A; 2NZ7 A; 4P4H I; 2P1H A; 2M5V A; 4FH0 A; 4O6X A; 2VGQ A; 1ICH A; 1A1W A; 4N1J A; 4D8O A; 2A9I A; 1D2Z B; 2BBZ A; 2MS7 A; 4M9X A; 2YGS A; 2L6A A; 2BBR A; 2F1S A; 1E3Y A; 2KM6 A; 2A5Y B; 1WXP A; 1CWW A; 3LQQ A; 2IB1 A; 4N1L A; #chains in the Genus database with same CATH homology 4IZA B; 4O9L A; 2G7R A; 4M9S A; 1E41 A; 3YGS C; 2L9M A; 4F44 A; 2N97 A; 2LWD A; 3LQR A; 1FAD A; 2GF5 A; 2DO9 A; 3MOP G; 2YU0 A; 1Z6T A; 3CRD A; 2DBF A; 1PN5 A; 3EZQ A; 2D96 A; 2N00 A; 1CY5 A; 4UZ0 A; 2MN4 A; 2NSN A; 3J6J A; 2N80 A; 2XV9 A; 2MJM A; 4IZ5 E; 4JUP A; 2MS8 A; 4N1K A; 2OF5 H; 2LS7 A; 3KAT A; 4P4H A; 4RHW A; 3CL3 A; 2O71 A; 3YGS P; 2N7Z A; 3MOP K; 1DDF A; 2B1W A; 2MB9 A; 4RHW E; 4EWI A; 1WH4 A; 1N3K A; 2HM2 Q; 3T6P A; 4F42 A; 1D2Z A; 2OF5 A; 2DBG A; 2KN6 A; 4JQW A; 1C15 A; 1DGN A; 4E9M A; 1NGR A; 4I16 A; 2N1F A; 4QOB A; 1A1Z A; 4O9F A; 2DBH A; 3EZQ B; 3QF2 A; 4DWN A; 2NAQ A; 3J63 A; 1YGO A; 4IZ7 B; 2MPC A; 4A2Q A; 1UCP A; 4LWD A; 4O7Q A; 2DBD A; 3MOP A; 4ZBW A; 2YQF A; 2LWE A; 2YVI A; 4A2W A; 4NQK A; 1WMG A; 2N83 A; 4M9Z A; 2NZ7 A; 4P4H I; 2P1H A; 2M5V A; 4FH0 A; 4O6X A; 2VGQ A; 1ICH A; 1A1W A; 4N1J A; 4D8O A; 2A9I A; 1D2Z B; 2BBZ A; 2MS7 A; 4M9X A; 2YGS A; 2L6A A; 2BBR A; 2F1S A; 1E3Y A; 2KM6 A; 2A5Y B; 1WXP A; 1CWW A; 3LQQ A; 2IB1 A; 4N1L A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
