2NZ7A

Crystal structure analysis of caspase-recruitment domain (card) of nod1
Total Genus 38
1020304050607080900510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
93
structure length
93
Chain Sequence
SESHPHIQLLKSNRELLVTHIRNTQCLVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQLADAYVDLRPWLLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (18-32)AH2 (37-47)AH4 (64-78)AH3 (52-60)AH5 (80-95)EMPTYTVIII1 (14-17)TVIII2 (48-51)Updating...
connected with : NaN
molecule tags Apoptosis
source organism Homo sapiens
publication title Monomer/dimer transition of the caspase-recruitment domain of human Nod1
pubmed doi rcsb
molecule keywords Caspase recruitment domain-containing protein 4
total genus 38
structure length 93
sequence length 93
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-11-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2nz7A00
1E3YA 2M5VA 4P4HI 2A9IA 4JQWA 3T6PA 1A1ZA 2N83A 3J63A 2N97A 4E9MA 1ICHA 1FADA 3LQQA 4D8OA 1NGRA 1E41A 3YGSP 2O71A 4M9SA 4P4HA 3J6JA 2HM2Q 4N1JA 4NQKA 1WH4A 4UZ0A 4RHWE 2D96A 4F42A 1D2ZB 2MS7A 2N1FA 2MPCA 1DGNA 2DO9A 3MOPG 2OF5H 2NSNA 3YGSC 2N7ZA 4DWNA 2OF5A 2B1WA 1YGOA 4M9XA 3QF2A 2YQFA 1PN5A 1Z6TA 3MOPK 2YU0A 1N3KA 1WXPA 2A5YB 2GF5A 2L6AA 2KM6A 4A2WA 4O6XA 2N00A 4N1LA 1D2ZA 2DBHA 4IZ7B 1WMGA 3KATA 4M9ZA 2DBDA 2LS7A 2MS8A 4LWDA 2F1SA 4A2QA 4FH0A 2YVIA 1A1WA 3LQRA 2P1HA 4QOBA 1CWWA 2L9MA 2VGQA 2NAQA 1DDFA 4O9FA 4RHWA 3CL3A 4N1KA 2LWDA 2MN4A 4F44A 4O9LA 2BBZA 4O7QA 2G7RA 2IB1A 3EZQB 2N80A 3MOPA 2DBFA 4EWIA 2MB9A 1UCPA 4IZAB 4I16A 2LWEA 2BBRA 3CRDA 2NZ7A 4ZBWA 1C15A 1CY5A 3EZQA 4JUPA 2DBGA 2KN6A 2YGSA 4IZ5E
chains in the Genus database with same CATH superfamily
1E3YA 2M5VA 4P4HI 2A9IA 4JQWA 3T6PA 1A1ZA 2N83A 3J63A 2N97A 4E9MA 1ICHA 1FADA 3LQQA 4D8OA 1NGRA 1E41A 3YGSP 2O71A 4M9SA 4P4HA 3J6JA 2HM2Q 4N1JA 4NQKA 1WH4A 4UZ0A 4RHWE 2D96A 4F42A 1D2ZB 2MS7A 2N1FA 2MPCA 1DGNA 2DO9A 3MOPG 2OF5H 2NSNA 3YGSC 2N7ZA 4DWNA 2OF5A 2B1WA 1YGOA 4M9XA 3QF2A 2YQFA 1PN5A 1Z6TA 3MOPK 2YU0A 1N3KA 1WXPA 2A5YB 2GF5A 2L6AA 2KM6A 4A2WA 4O6XA 2N00A 4N1LA 1D2ZA 2DBHA 4IZ7B 1WMGA 3KATA 4M9ZA 2DBDA 2LS7A 2MS8A 4LWDA 2F1SA 4A2QA 4FH0A 2YVIA 1A1WA 3LQRA 2P1HA 4QOBA 1CWWA 2L9MA 2VGQA 2NAQA 1DDFA 4O9FA 4RHWA 3CL3A 4N1KA 2LWDA 2MN4A 4F44A 4O9LA 2BBZA 4O7QA 2G7RA 2IB1A 3EZQB 2N80A 3MOPA 2DBFA 4EWIA 2MB9A 1UCPA 4IZAB 4I16A 2LWEA 2BBRA 3CRDA 2NZ7A 2MJMA 4ZBWA 2XV9A 1C15A 1CY5A 3EZQA 4JUPA 2DBGA 2KN6A 2YGSA 4IZ5E
chains in the Genus database with same CATH topology
1E3YA 2M5VA 4P4HI 2A9IA 4JQWA 3T6PA 1A1ZA 2N83A 3J63A 2N97A 4E9MA 1ICHA 1FADA 3LQQA 4D8OA 1NGRA 1E41A 3YGSP 2O71A 4M9SA 4P4HA 3J6JA 2HM2Q 4N1JA 4NQKA 1WH4A 4UZ0A 4RHWE 2D96A 4F42A 1D2ZB 2MS7A 2N1FA 2MPCA 1DGNA 2DO9A 3MOPG 2OF5H 2NSNA 3YGSC 2N7ZA 4DWNA 2OF5A 2B1WA 1YGOA 4M9XA 3QF2A 2YQFA 1PN5A 1Z6TA 3MOPK 2YU0A 1N3KA 1WXPA 2A5YB 2GF5A 2L6AA 2KM6A 4A2WA 4O6XA 2N00A 4N1LA 1D2ZA 2DBHA 4IZ7B 1WMGA 3KATA 4M9ZA 2DBDA 2LS7A 2MS8A 4LWDA 2F1SA 4A2QA 4FH0A 2YVIA 1A1WA 3LQRA 2P1HA 4QOBA 1CWWA 2L9MA 2VGQA 2NAQA 1DDFA 4O9FA 4RHWA 3CL3A 4N1KA 2LWDA 2MN4A 4F44A 4O9LA 2BBZA 4O7QA 2G7RA 2IB1A 3EZQB 2N80A 3MOPA 2DBFA 4EWIA 2MB9A 1UCPA 4IZAB 4I16A 2LWEA 2BBRA 3CRDA 2NZ7A 2MJMA 4ZBWA 2XV9A 1C15A 1CY5A 3EZQA 4JUPA 2DBGA 2KN6A 2YGSA 4IZ5E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E3Y A;  2M5V A;  4P4H I;  2A9I A;  4JQW A;  3T6P A;  1A1Z A;  2N83 A;  3J63 A;  2N97 A;  4E9M A;  1ICH A;  1FAD A;  3LQQ A;  4D8O A;  1NGR A;  1E41 A;  3YGS P;  2O71 A;  4M9S A;  4P4H A;  3J6J A;  2HM2 Q;  4N1J A;  4NQK A;  1WH4 A;  4UZ0 A;  4RHW E;  2D96 A;  4F42 A;  1D2Z B;  2MS7 A;  2N1F A;  2MPC A;  1DGN A;  2DO9 A;  3MOP G;  2OF5 H;  2NSN A;  3YGS C;  2N7Z A;  4DWN A;  2OF5 A;  2B1W A;  1YGO A;  4M9X A;  3QF2 A;  2YQF A;  1PN5 A;  1Z6T A;  3MOP K;  2YU0 A;  1N3K A;  1WXP A;  2A5Y B;  2GF5 A;  2L6A A;  2KM6 A;  4A2W A;  4O6X A;  2N00 A;  4N1L A;  1D2Z A;  2DBH A;  4IZ7 B;  1WMG A;  3KAT A;  4M9Z A;  2DBD A;  2LS7 A;  2MS8 A;  4LWD A;  2F1S A;  4A2Q A;  4FH0 A;  2YVI A;  1A1W A;  3LQR A;  2P1H A;  4QOB A;  1CWW A;  2L9M A;  2VGQ A;  2NAQ A;  1DDF A;  4O9F A;  4RHW A;  3CL3 A;  4N1K A;  2LWD A;  2MN4 A;  4F44 A;  4O9L A;  2BBZ A;  4O7Q A;  2G7R A;  2IB1 A;  3EZQ B;  2N80 A;  3MOP A;  2DBF A;  4EWI A;  2MB9 A;  1UCP A;  4IZA B;  4I16 A;  2LWE A;  2BBR A;  3CRD A;  2NZ7 A;  4ZBW A;  1C15 A;  1CY5 A;  3EZQ A;  4JUP A;  2DBG A;  2KN6 A;  2YGS A;  4IZ5 E; 
#chains in the Genus database with same CATH topology
 1E3Y A;  2M5V A;  4P4H I;  2A9I A;  4JQW A;  3T6P A;  1A1Z A;  2N83 A;  3J63 A;  2N97 A;  4E9M A;  1ICH A;  1FAD A;  3LQQ A;  4D8O A;  1NGR A;  1E41 A;  3YGS P;  2O71 A;  4M9S A;  4P4H A;  3J6J A;  2HM2 Q;  4N1J A;  4NQK A;  1WH4 A;  4UZ0 A;  4RHW E;  2D96 A;  4F42 A;  1D2Z B;  2MS7 A;  2N1F A;  2MPC A;  1DGN A;  2DO9 A;  3MOP G;  2OF5 H;  2NSN A;  3YGS C;  2N7Z A;  4DWN A;  2OF5 A;  2B1W A;  1YGO A;  4M9X A;  3QF2 A;  2YQF A;  1PN5 A;  1Z6T A;  3MOP K;  2YU0 A;  1N3K A;  1WXP A;  2A5Y B;  2GF5 A;  2L6A A;  2KM6 A;  4A2W A;  4O6X A;  2N00 A;  4N1L A;  1D2Z A;  2DBH A;  4IZ7 B;  1WMG A;  3KAT A;  4M9Z A;  2DBD A;  2LS7 A;  2MS8 A;  4LWD A;  2F1S A;  4A2Q A;  4FH0 A;  2YVI A;  1A1W A;  3LQR A;  2P1H A;  4QOB A;  1CWW A;  2L9M A;  2VGQ A;  2NAQ A;  1DDF A;  4O9F A;  4RHW A;  3CL3 A;  4N1K A;  2LWD A;  2MN4 A;  4F44 A;  4O9L A;  2BBZ A;  4O7Q A;  2G7R A;  2IB1 A;  3EZQ B;  2N80 A;  3MOP A;  2DBF A;  4EWI A;  2MB9 A;  1UCP A;  4IZA B;  4I16 A;  2LWE A;  2BBR A;  3CRD A;  2NZ7 A;  2MJM A;  4ZBW A;  2XV9 A;  1C15 A;  1CY5 A;  3EZQ A;  4JUP A;  2DBG A;  2KN6 A;  2YGS A;  4IZ5 E; 
#chains in the Genus database with same CATH homology
 1E3Y A;  2M5V A;  4P4H I;  2A9I A;  4JQW A;  3T6P A;  1A1Z A;  2N83 A;  3J63 A;  2N97 A;  4E9M A;  1ICH A;  1FAD A;  3LQQ A;  4D8O A;  1NGR A;  1E41 A;  3YGS P;  2O71 A;  4M9S A;  4P4H A;  3J6J A;  2HM2 Q;  4N1J A;  4NQK A;  1WH4 A;  4UZ0 A;  4RHW E;  2D96 A;  4F42 A;  1D2Z B;  2MS7 A;  2N1F A;  2MPC A;  1DGN A;  2DO9 A;  3MOP G;  2OF5 H;  2NSN A;  3YGS C;  2N7Z A;  4DWN A;  2OF5 A;  2B1W A;  1YGO A;  4M9X A;  3QF2 A;  2YQF A;  1PN5 A;  1Z6T A;  3MOP K;  2YU0 A;  1N3K A;  1WXP A;  2A5Y B;  2GF5 A;  2L6A A;  2KM6 A;  4A2W A;  4O6X A;  2N00 A;  4N1L A;  1D2Z A;  2DBH A;  4IZ7 B;  1WMG A;  3KAT A;  4M9Z A;  2DBD A;  2LS7 A;  2MS8 A;  4LWD A;  2F1S A;  4A2Q A;  4FH0 A;  2YVI A;  1A1W A;  3LQR A;  2P1H A;  4QOB A;  1CWW A;  2L9M A;  2VGQ A;  2NAQ A;  1DDF A;  4O9F A;  4RHW A;  3CL3 A;  4N1K A;  2LWD A;  2MN4 A;  4F44 A;  4O9L A;  2BBZ A;  4O7Q A;  2G7R A;  2IB1 A;  3EZQ B;  2N80 A;  3MOP A;  2DBF A;  4EWI A;  2MB9 A;  1UCP A;  4IZA B;  4I16 A;  2LWE A;  2BBR A;  3CRD A;  2NZ7 A;  2MJM A;  4ZBW A;  2XV9 A;  1C15 A;  1CY5 A;  3EZQ A;  4JUP A;  2DBG A;  2KN6 A;  2YGS A;  4IZ5 E; 
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