2O71A

Crystal structure of raidd dd
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
91
structure length
91
Chain Sequence
HILNSSPSDRQINQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDPSLLLHMLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Apoptosis
source organism Homo sapiens
publication title Crystal Structure of RAIDD Death Domain Implicates Potential Mechanism of PIDDosome Assembly
pubmed doi rcsb
molecule keywords Death domain-containing protein CRADD
total genus 35
structure length 91
sequence length 91
ec nomenclature
pdb deposition date 2006-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2o71A00
3MOPG 1N3KA 3EZQA 3YGSP 4P4HI 4D8OA 4E9MA 2DBDA 2GF5A 1YGOA 2M5VA 4JQWA 4F42A 2MN4A 1C15A 2A5YB 3MOPK 4I16A 2N83A 4P4HA 2D96A 1PN5A 4LWDA 2NAQA 1FADA 4FH0A 2L9MA 2G7RA 2YU0A 3T6PA 2YQFA 3LQRA 4N1JA 1UCPA 3CRDA 4EWIA 4IZ7B 1E3YA 2VGQA 2NZ7A 2A9IA 2LWEA 4O9LA 2MB9A 2YVIA 1CWWA 2N80A 2N97A 2LWDA 4A2WA 2MS8A 4UZ0A 2B1WA 4ZBWA 1ICHA 2N1FA 2DO9A 4A2QA 4QOBA 1D2ZB 2MS7A 2OF5A 4DWNA 2NSNA 3MOPA 1A1WA 2MPCA 2F1SA 1NGRA 4N1KA 2DBFA 4M9SA 4RHWE 2DBHA 2P1HA 2BBZA 2LS7A 2N7ZA 1E41A 4JUPA 3CL3A 3EZQB 4M9XA 4M9ZA 4RHWA 4IZAB 3LQQA 2N00A 2O71A 2YGSA 1DDFA 4F44A 2KN6A 2DBGA 2KM6A 2OF5H 1WMGA 1DGNA 1Z6TA 3KATA 3YGSC 1A1ZA 4O7QA 3J6JA 1D2ZA 4N1LA 2BBRA 3J63A 3QF2A 1WXPA 2HM2Q 2IB1A 2L6AA 4NQKA 4IZ5E 1CY5A 1WH4A 4O9FA 4O6XA
chains in the Genus database with same CATH superfamily
3MOPG 1N3KA 3EZQA 3YGSP 4P4HI 4D8OA 4E9MA 2DBDA 2GF5A 1YGOA 2M5VA 4JQWA 4F42A 2MN4A 1C15A 2A5YB 3MOPK 4I16A 2N83A 4P4HA 2D96A 1PN5A 2XV9A 4LWDA 2NAQA 1FADA 4FH0A 2L9MA 2G7RA 2YU0A 3T6PA 2YQFA 3LQRA 4N1JA 1UCPA 3CRDA 4EWIA 4IZ7B 1E3YA 2VGQA 2NZ7A 2A9IA 2LWEA 4O9LA 2MB9A 2YVIA 1CWWA 2N80A 2N97A 2LWDA 4A2WA 2MJMA 2MS8A 4UZ0A 2B1WA 4ZBWA 1ICHA 2N1FA 2DO9A 4A2QA 4QOBA 1D2ZB 2MS7A 2OF5A 4DWNA 2NSNA 3MOPA 1A1WA 2MPCA 2F1SA 1NGRA 4N1KA 2DBFA 4M9SA 4RHWE 2DBHA 2P1HA 2BBZA 2LS7A 2N7ZA 1E41A 4JUPA 3CL3A 3EZQB 4M9XA 4M9ZA 4RHWA 4IZAB 3LQQA 2N00A 2O71A 2YGSA 1DDFA 4F44A 2KN6A 2DBGA 2KM6A 2OF5H 1WMGA 1DGNA 1Z6TA 3KATA 3YGSC 1A1ZA 4O7QA 3J6JA 1D2ZA 4N1LA 2BBRA 3J63A 3QF2A 1WXPA 2HM2Q 2IB1A 2L6AA 4NQKA 4IZ5E 1CY5A 1WH4A 4O9FA 4O6XA
chains in the Genus database with same CATH topology
3MOPG 1N3KA 3EZQA 3YGSP 4P4HI 4D8OA 4E9MA 2DBDA 2GF5A 1YGOA 2M5VA 4JQWA 4F42A 2MN4A 1C15A 2A5YB 3MOPK 4I16A 2N83A 4P4HA 2D96A 1PN5A 2XV9A 4LWDA 2NAQA 1FADA 4FH0A 2L9MA 2G7RA 2YU0A 3T6PA 2YQFA 3LQRA 4N1JA 1UCPA 3CRDA 4EWIA 4IZ7B 1E3YA 2VGQA 2NZ7A 2A9IA 2LWEA 4O9LA 2MB9A 2YVIA 1CWWA 2N80A 2N97A 2LWDA 4A2WA 2MJMA 2MS8A 4UZ0A 2B1WA 4ZBWA 1ICHA 2N1FA 2DO9A 4A2QA 4QOBA 1D2ZB 2MS7A 2OF5A 4DWNA 2NSNA 3MOPA 1A1WA 2MPCA 2F1SA 1NGRA 4N1KA 2DBFA 4M9SA 4RHWE 2DBHA 2P1HA 2BBZA 2LS7A 2N7ZA 1E41A 4JUPA 3CL3A 3EZQB 4M9XA 4M9ZA 4RHWA 4IZAB 3LQQA 2N00A 2O71A 2YGSA 1DDFA 4F44A 2KN6A 2DBGA 2KM6A 2OF5H 1WMGA 1DGNA 1Z6TA 3KATA 3YGSC 1A1ZA 4O7QA 3J6JA 1D2ZA 4N1LA 2BBRA 3J63A 3QF2A 1WXPA 2HM2Q 2IB1A 2L6AA 4NQKA 4IZ5E 1CY5A 1WH4A 4O9FA 4O6XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MOP G;  1N3K A;  3EZQ A;  3YGS P;  4P4H I;  4D8O A;  4E9M A;  2DBD A;  2GF5 A;  1YGO A;  2M5V A;  4JQW A;  4F42 A;  2MN4 A;  1C15 A;  2A5Y B;  3MOP K;  4I16 A;  2N83 A;  4P4H A;  2D96 A;  1PN5 A;  4LWD A;  2NAQ A;  1FAD A;  4FH0 A;  2L9M A;  2G7R A;  2YU0 A;  3T6P A;  2YQF A;  3LQR A;  4N1J A;  1UCP A;  3CRD A;  4EWI A;  4IZ7 B;  1E3Y A;  2VGQ A;  2NZ7 A;  2A9I A;  2LWE A;  4O9L A;  2MB9 A;  2YVI A;  1CWW A;  2N80 A;  2N97 A;  2LWD A;  4A2W A;  2MS8 A;  4UZ0 A;  2B1W A;  4ZBW A;  1ICH A;  2N1F A;  2DO9 A;  4A2Q A;  4QOB A;  1D2Z B;  2MS7 A;  2OF5 A;  4DWN A;  2NSN A;  3MOP A;  1A1W A;  2MPC A;  2F1S A;  1NGR A;  4N1K A;  2DBF A;  4M9S A;  4RHW E;  2DBH A;  2P1H A;  2BBZ A;  2LS7 A;  2N7Z A;  1E41 A;  4JUP A;  3CL3 A;  3EZQ B;  4M9X A;  4M9Z A;  4RHW A;  4IZA B;  3LQQ A;  2N00 A;  2O71 A;  2YGS A;  1DDF A;  4F44 A;  2KN6 A;  2DBG A;  2KM6 A;  2OF5 H;  1WMG A;  1DGN A;  1Z6T A;  3KAT A;  3YGS C;  1A1Z A;  4O7Q A;  3J6J A;  1D2Z A;  4N1L A;  2BBR A;  3J63 A;  3QF2 A;  1WXP A;  2HM2 Q;  2IB1 A;  2L6A A;  4NQK A;  4IZ5 E;  1CY5 A;  1WH4 A;  4O9F A;  4O6X A; 
#chains in the Genus database with same CATH topology
 3MOP G;  1N3K A;  3EZQ A;  3YGS P;  4P4H I;  4D8O A;  4E9M A;  2DBD A;  2GF5 A;  1YGO A;  2M5V A;  4JQW A;  4F42 A;  2MN4 A;  1C15 A;  2A5Y B;  3MOP K;  4I16 A;  2N83 A;  4P4H A;  2D96 A;  1PN5 A;  2XV9 A;  4LWD A;  2NAQ A;  1FAD A;  4FH0 A;  2L9M A;  2G7R A;  2YU0 A;  3T6P A;  2YQF A;  3LQR A;  4N1J A;  1UCP A;  3CRD A;  4EWI A;  4IZ7 B;  1E3Y A;  2VGQ A;  2NZ7 A;  2A9I A;  2LWE A;  4O9L A;  2MB9 A;  2YVI A;  1CWW A;  2N80 A;  2N97 A;  2LWD A;  4A2W A;  2MJM A;  2MS8 A;  4UZ0 A;  2B1W A;  4ZBW A;  1ICH A;  2N1F A;  2DO9 A;  4A2Q A;  4QOB A;  1D2Z B;  2MS7 A;  2OF5 A;  4DWN A;  2NSN A;  3MOP A;  1A1W A;  2MPC A;  2F1S A;  1NGR A;  4N1K A;  2DBF A;  4M9S A;  4RHW E;  2DBH A;  2P1H A;  2BBZ A;  2LS7 A;  2N7Z A;  1E41 A;  4JUP A;  3CL3 A;  3EZQ B;  4M9X A;  4M9Z A;  4RHW A;  4IZA B;  3LQQ A;  2N00 A;  2O71 A;  2YGS A;  1DDF A;  4F44 A;  2KN6 A;  2DBG A;  2KM6 A;  2OF5 H;  1WMG A;  1DGN A;  1Z6T A;  3KAT A;  3YGS C;  1A1Z A;  4O7Q A;  3J6J A;  1D2Z A;  4N1L A;  2BBR A;  3J63 A;  3QF2 A;  1WXP A;  2HM2 Q;  2IB1 A;  2L6A A;  4NQK A;  4IZ5 E;  1CY5 A;  1WH4 A;  4O9F A;  4O6X A; 
#chains in the Genus database with same CATH homology
 3MOP G;  1N3K A;  3EZQ A;  3YGS P;  4P4H I;  4D8O A;  4E9M A;  2DBD A;  2GF5 A;  1YGO A;  2M5V A;  4JQW A;  4F42 A;  2MN4 A;  1C15 A;  2A5Y B;  3MOP K;  4I16 A;  2N83 A;  4P4H A;  2D96 A;  1PN5 A;  2XV9 A;  4LWD A;  2NAQ A;  1FAD A;  4FH0 A;  2L9M A;  2G7R A;  2YU0 A;  3T6P A;  2YQF A;  3LQR A;  4N1J A;  1UCP A;  3CRD A;  4EWI A;  4IZ7 B;  1E3Y A;  2VGQ A;  2NZ7 A;  2A9I A;  2LWE A;  4O9L A;  2MB9 A;  2YVI A;  1CWW A;  2N80 A;  2N97 A;  2LWD A;  4A2W A;  2MJM A;  2MS8 A;  4UZ0 A;  2B1W A;  4ZBW A;  1ICH A;  2N1F A;  2DO9 A;  4A2Q A;  4QOB A;  1D2Z B;  2MS7 A;  2OF5 A;  4DWN A;  2NSN A;  3MOP A;  1A1W A;  2MPC A;  2F1S A;  1NGR A;  4N1K A;  2DBF A;  4M9S A;  4RHW E;  2DBH A;  2P1H A;  2BBZ A;  2LS7 A;  2N7Z A;  1E41 A;  4JUP A;  3CL3 A;  3EZQ B;  4M9X A;  4M9Z A;  4RHW A;  4IZA B;  3LQQ A;  2N00 A;  2O71 A;  2YGS A;  1DDF A;  4F44 A;  2KN6 A;  2DBG A;  2KM6 A;  2OF5 H;  1WMG A;  1DGN A;  1Z6T A;  3KAT A;  3YGS C;  1A1Z A;  4O7Q A;  3J6J A;  1D2Z A;  4N1L A;  2BBR A;  3J63 A;  3QF2 A;  1WXP A;  2HM2 Q;  2IB1 A;  2L6A A;  4NQK A;  4IZ5 E;  1CY5 A;  1WH4 A;  4O9F A;  4O6X A; 
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