2P1HA

Rapid folding and unfolding of apaf-1 card
Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
94
structure length
94
Chain Sequence
GSMDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDGIP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (5-21)AH6 (83-89)3H1 (90-92)AH4 (51-63)AH2 (24-34)AH5 (67-80)EMPTYAH3 (39-47)Updating...
connected with : NaN
molecule tags Apoptosis
source organism Homo sapiens
publication title Rapid Folding and Unfolding of Apaf-1 CARD.
pubmed doi rcsb
molecule keywords Apoptotic protease-activating factor 1
total genus 34
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2007-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2p1hA00
2N7ZA 3T6PA 2N97A 4N1KA 3LQRA 2DBHA 2P1HA 3YGSP 2NAQA 2BBRA 4IZAB 1E41A 2A5YB 2A9IA 2F1SA 1WMGA 4DWNA 2IB1A 2MB9A 1ICHA 1CY5A 2N00A 1Z6TA 2OF5H 1C15A 2HM2Q 2OF5A 4NQKA 1A1WA 1YGOA 2M5VA 2KN6A 4JUPA 3LQQA 1WH4A 1WXPA 4D8OA 2N1FA 2LWDA 4O9FA 4M9XA 4N1JA 3CL3A 4FH0A 3MOPK 4O7QA 4F42A 4M9ZA 3J6JA 3MOPG 4A2QA 2LS7A 3MOPA 4M9SA 4F44A 3CRDA 4EWIA 2MS7A 2B1WA 1N3KA 2YGSA 2DBDA 2GF5A 4P4HA 2DBGA 2N83A 2DBFA 2O71A 4QOBA 2L9MA 4I16A 2BBZA 1A1ZA 1DDFA 3J63A 4IZ5E 4O9LA 3YGSC 1D2ZA 4RHWA 3KATA 2MS8A 4O6XA 4E9MA 2L6AA 1UCPA 4LWDA 2KM6A 4RHWE 4N1LA 2YVIA 2LWEA 1CWWA 2MN4A 2NZ7A 2G7RA 1PN5A 2YU0A 2NSNA 2VGQA 3QF2A 2D96A 3EZQB 4JQWA 2MPCA 2YQFA 1E3YA 1D2ZB 4IZ7B 4UZ0A 3EZQA 2N80A 2DO9A 1FADA 1NGRA 4P4HI 4A2WA 1DGNA 4ZBWA
chains in the Genus database with same CATH superfamily
2N7ZA 3T6PA 2N97A 4N1KA 3LQRA 2DBHA 2P1HA 3YGSP 2NAQA 2BBRA 4IZAB 1E41A 2A5YB 2A9IA 2F1SA 1WMGA 4DWNA 2IB1A 2MB9A 1ICHA 1CY5A 2N00A 1Z6TA 2OF5H 1C15A 2HM2Q 2OF5A 4NQKA 1A1WA 1YGOA 2M5VA 2KN6A 2MJMA 4JUPA 3LQQA 1WH4A 1WXPA 4D8OA 2N1FA 2LWDA 4O9FA 4M9XA 4N1JA 3CL3A 4FH0A 3MOPK 4O7QA 4F42A 4M9ZA 3J6JA 3MOPG 4A2QA 2LS7A 3MOPA 4M9SA 4F44A 3CRDA 4EWIA 2MS7A 2B1WA 2XV9A 1N3KA 2YGSA 2DBDA 2GF5A 4P4HA 2DBGA 2N83A 2DBFA 2O71A 4QOBA 2L9MA 4I16A 2BBZA 1A1ZA 1DDFA 3J63A 4IZ5E 4O9LA 3YGSC 1D2ZA 4RHWA 3KATA 2MS8A 4O6XA 4E9MA 2L6AA 1UCPA 4LWDA 2KM6A 4RHWE 4N1LA 2YVIA 2LWEA 1CWWA 2MN4A 2NZ7A 2G7RA 1PN5A 2YU0A 2NSNA 2VGQA 3QF2A 2D96A 3EZQB 4JQWA 2MPCA 2YQFA 1E3YA 1D2ZB 4IZ7B 4UZ0A 3EZQA 2N80A 2DO9A 1FADA 1NGRA 4P4HI 4A2WA 1DGNA 4ZBWA
chains in the Genus database with same CATH topology
2N7ZA 3T6PA 2N97A 4N1KA 3LQRA 2DBHA 2P1HA 3YGSP 2NAQA 2BBRA 4IZAB 1E41A 2A5YB 2A9IA 2F1SA 1WMGA 4DWNA 2IB1A 2MB9A 1ICHA 1CY5A 2N00A 1Z6TA 2OF5H 1C15A 2HM2Q 2OF5A 4NQKA 1A1WA 1YGOA 2M5VA 2KN6A 2MJMA 4JUPA 3LQQA 1WH4A 1WXPA 4D8OA 2N1FA 2LWDA 4O9FA 4M9XA 4N1JA 3CL3A 4FH0A 3MOPK 4O7QA 4F42A 4M9ZA 3J6JA 3MOPG 4A2QA 2LS7A 3MOPA 4M9SA 4F44A 3CRDA 4EWIA 2MS7A 2B1WA 2XV9A 1N3KA 2YGSA 2DBDA 2GF5A 4P4HA 2DBGA 2N83A 2DBFA 2O71A 4QOBA 2L9MA 4I16A 2BBZA 1A1ZA 1DDFA 3J63A 4IZ5E 4O9LA 3YGSC 1D2ZA 4RHWA 3KATA 2MS8A 4O6XA 4E9MA 2L6AA 1UCPA 4LWDA 2KM6A 4RHWE 4N1LA 2YVIA 2LWEA 1CWWA 2MN4A 2NZ7A 2G7RA 1PN5A 2YU0A 2NSNA 2VGQA 3QF2A 2D96A 3EZQB 4JQWA 2MPCA 2YQFA 1E3YA 1D2ZB 4IZ7B 4UZ0A 3EZQA 2N80A 2DO9A 1FADA 1NGRA 4P4HI 4A2WA 1DGNA 4ZBWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2N7Z A;  3T6P A;  2N97 A;  4N1K A;  3LQR A;  2DBH A;  2P1H A;  3YGS P;  2NAQ A;  2BBR A;  4IZA B;  1E41 A;  2A5Y B;  2A9I A;  2F1S A;  1WMG A;  4DWN A;  2IB1 A;  2MB9 A;  1ICH A;  1CY5 A;  2N00 A;  1Z6T A;  2OF5 H;  1C15 A;  2HM2 Q;  2OF5 A;  4NQK A;  1A1W A;  1YGO A;  2M5V A;  2KN6 A;  4JUP A;  3LQQ A;  1WH4 A;  1WXP A;  4D8O A;  2N1F A;  2LWD A;  4O9F A;  4M9X A;  4N1J A;  3CL3 A;  4FH0 A;  3MOP K;  4O7Q A;  4F42 A;  4M9Z A;  3J6J A;  3MOP G;  4A2Q A;  2LS7 A;  3MOP A;  4M9S A;  4F44 A;  3CRD A;  4EWI A;  2MS7 A;  2B1W A;  1N3K A;  2YGS A;  2DBD A;  2GF5 A;  4P4H A;  2DBG A;  2N83 A;  2DBF A;  2O71 A;  4QOB A;  2L9M A;  4I16 A;  2BBZ A;  1A1Z A;  1DDF A;  3J63 A;  4IZ5 E;  4O9L A;  3YGS C;  1D2Z A;  4RHW A;  3KAT A;  2MS8 A;  4O6X A;  4E9M A;  2L6A A;  1UCP A;  4LWD A;  2KM6 A;  4RHW E;  4N1L A;  2YVI A;  2LWE A;  1CWW A;  2MN4 A;  2NZ7 A;  2G7R A;  1PN5 A;  2YU0 A;  2NSN A;  2VGQ A;  3QF2 A;  2D96 A;  3EZQ B;  4JQW A;  2MPC A;  2YQF A;  1E3Y A;  1D2Z B;  4IZ7 B;  4UZ0 A;  3EZQ A;  2N80 A;  2DO9 A;  1FAD A;  1NGR A;  4P4H I;  4A2W A;  1DGN A;  4ZBW A; 
#chains in the Genus database with same CATH topology
 2N7Z A;  3T6P A;  2N97 A;  4N1K A;  3LQR A;  2DBH A;  2P1H A;  3YGS P;  2NAQ A;  2BBR A;  4IZA B;  1E41 A;  2A5Y B;  2A9I A;  2F1S A;  1WMG A;  4DWN A;  2IB1 A;  2MB9 A;  1ICH A;  1CY5 A;  2N00 A;  1Z6T A;  2OF5 H;  1C15 A;  2HM2 Q;  2OF5 A;  4NQK A;  1A1W A;  1YGO A;  2M5V A;  2KN6 A;  2MJM A;  4JUP A;  3LQQ A;  1WH4 A;  1WXP A;  4D8O A;  2N1F A;  2LWD A;  4O9F A;  4M9X A;  4N1J A;  3CL3 A;  4FH0 A;  3MOP K;  4O7Q A;  4F42 A;  4M9Z A;  3J6J A;  3MOP G;  4A2Q A;  2LS7 A;  3MOP A;  4M9S A;  4F44 A;  3CRD A;  4EWI A;  2MS7 A;  2B1W A;  2XV9 A;  1N3K A;  2YGS A;  2DBD A;  2GF5 A;  4P4H A;  2DBG A;  2N83 A;  2DBF A;  2O71 A;  4QOB A;  2L9M A;  4I16 A;  2BBZ A;  1A1Z A;  1DDF A;  3J63 A;  4IZ5 E;  4O9L A;  3YGS C;  1D2Z A;  4RHW A;  3KAT A;  2MS8 A;  4O6X A;  4E9M A;  2L6A A;  1UCP A;  4LWD A;  2KM6 A;  4RHW E;  4N1L A;  2YVI A;  2LWE A;  1CWW A;  2MN4 A;  2NZ7 A;  2G7R A;  1PN5 A;  2YU0 A;  2NSN A;  2VGQ A;  3QF2 A;  2D96 A;  3EZQ B;  4JQW A;  2MPC A;  2YQF A;  1E3Y A;  1D2Z B;  4IZ7 B;  4UZ0 A;  3EZQ A;  2N80 A;  2DO9 A;  1FAD A;  1NGR A;  4P4H I;  4A2W A;  1DGN A;  4ZBW A; 
#chains in the Genus database with same CATH homology
 2N7Z A;  3T6P A;  2N97 A;  4N1K A;  3LQR A;  2DBH A;  2P1H A;  3YGS P;  2NAQ A;  2BBR A;  4IZA B;  1E41 A;  2A5Y B;  2A9I A;  2F1S A;  1WMG A;  4DWN A;  2IB1 A;  2MB9 A;  1ICH A;  1CY5 A;  2N00 A;  1Z6T A;  2OF5 H;  1C15 A;  2HM2 Q;  2OF5 A;  4NQK A;  1A1W A;  1YGO A;  2M5V A;  2KN6 A;  2MJM A;  4JUP A;  3LQQ A;  1WH4 A;  1WXP A;  4D8O A;  2N1F A;  2LWD A;  4O9F A;  4M9X A;  4N1J A;  3CL3 A;  4FH0 A;  3MOP K;  4O7Q A;  4F42 A;  4M9Z A;  3J6J A;  3MOP G;  4A2Q A;  2LS7 A;  3MOP A;  4M9S A;  4F44 A;  3CRD A;  4EWI A;  2MS7 A;  2B1W A;  2XV9 A;  1N3K A;  2YGS A;  2DBD A;  2GF5 A;  4P4H A;  2DBG A;  2N83 A;  2DBF A;  2O71 A;  4QOB A;  2L9M A;  4I16 A;  2BBZ A;  1A1Z A;  1DDF A;  3J63 A;  4IZ5 E;  4O9L A;  3YGS C;  1D2Z A;  4RHW A;  3KAT A;  2MS8 A;  4O6X A;  4E9M A;  2L6A A;  1UCP A;  4LWD A;  2KM6 A;  4RHW E;  4N1L A;  2YVI A;  2LWE A;  1CWW A;  2MN4 A;  2NZ7 A;  2G7R A;  1PN5 A;  2YU0 A;  2NSN A;  2VGQ A;  3QF2 A;  2D96 A;  3EZQ B;  4JQW A;  2MPC A;  2YQF A;  1E3Y A;  1D2Z B;  4IZ7 B;  4UZ0 A;  3EZQ A;  2N80 A;  2DO9 A;  1FAD A;  1NGR A;  4P4H I;  4A2W A;  1DGN A;  4ZBW A; 
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