2YQFA

Solution structure of the death domain of ankyrin-1
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
111
structure length
111
Chain Sequence
GSSGSSGPGSLSGTEQAEMKMAVISEHLGLSWAELARELQFSVEDINRIRVENPNSLLEQSVALLNLWVIREGQNANMENLYTALQSIDRGEIVNMLEGSGRQSRNLKPDR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
source organism Homo sapiens
publication title Solution structure of the death domain of Ankyrin-1
rcsb
molecule keywords Ankyrin-1
total genus 26
structure length 111
sequence length 111
ec nomenclature
pdb deposition date 2007-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2yqfA01
2MB9A 4EWIA 4D8OA 2M5VA 4N1KA 2GF5A 2L9MA 2DO9A 2BBRA 2O71A 3J6JA 4LWDA 1CWWA 3YGSC 1C15A 2MS8A 2N97A 1WMGA 4N1LA 2G7RA 2NAQA 3CL3A 2BBZA 1A1ZA 3T6PA 4A2WA 4IZAB 1DDFA 3J63A 1DGNA 4JUPA 4M9ZA 1E41A 3EZQB 2IB1A 3EZQA 1Z6TA 2N00A 4I16A 2B1WA 1UCPA 4DWNA 2KM6A 2NZ7A 2DBFA 2F1SA 1WH4A 4O9FA 4QOBA 3LQQA 4N1JA 1FADA 2MS7A 4IZ5E 4IZ7B 2NSNA 2N7ZA 2LS7A 2DBDA 3LQRA 4O9LA 4JQWA 2N80A 4M9XA 2MPCA 2MN4A 4A2QA 3MOPK 4RHWA 1CY5A 2DBHA 2KN6A 2YQFA 4RHWE 4F42A 1N3KA 2YVIA 2YU0A 1D2ZA 2N1FA 2N83A 4UZ0A 2D96A 2VGQA 3KATA 3MOPG 3QF2A 2OF5A 1NGRA 3YGSP 2YGSA 4F44A 2P1HA 4ZBWA 4E9MA 1E3YA 1A1WA 4FH0A 4P4HI 4P4HA 4O7QA 4O6XA 2OF5H 2L6AA 1WXPA 1D2ZB 1YGOA 2LWEA 2HM2Q 3MOPA 2DBGA 4M9SA 2LWDA 1ICHA 4NQKA 1PN5A 2A5YB 2A9IA 3CRDA
chains in the Genus database with same CATH superfamily
2MB9A 4EWIA 4D8OA 2M5VA 4N1KA 2GF5A 2L9MA 2DO9A 2BBRA 2O71A 2MJMA 3J6JA 4LWDA 1CWWA 3YGSC 1C15A 2MS8A 2N97A 1WMGA 4N1LA 2G7RA 2NAQA 3CL3A 2BBZA 1A1ZA 3T6PA 4A2WA 4IZAB 1DDFA 3J63A 1DGNA 4JUPA 4M9ZA 1E41A 3EZQB 2IB1A 3EZQA 1Z6TA 2N00A 2XV9A 4I16A 2B1WA 1UCPA 4DWNA 2KM6A 2NZ7A 2DBFA 2F1SA 1WH4A 4O9FA 4QOBA 3LQQA 4N1JA 1FADA 2MS7A 4IZ5E 4IZ7B 2NSNA 2N7ZA 2LS7A 2DBDA 3LQRA 4O9LA 4JQWA 2N80A 4M9XA 2MPCA 2MN4A 4A2QA 3MOPK 4RHWA 1CY5A 2DBHA 2KN6A 2YQFA 4RHWE 4F42A 1N3KA 2YVIA 2YU0A 1D2ZA 2N1FA 2N83A 4UZ0A 2D96A 2VGQA 3KATA 3MOPG 3QF2A 2OF5A 1NGRA 3YGSP 2YGSA 4F44A 2P1HA 4ZBWA 4E9MA 1E3YA 1A1WA 4FH0A 4P4HI 4P4HA 4O7QA 4O6XA 2OF5H 2L6AA 1WXPA 1D2ZB 1YGOA 2LWEA 2HM2Q 3MOPA 2DBGA 4M9SA 2LWDA 1ICHA 4NQKA 1PN5A 2A5YB 2A9IA 3CRDA
chains in the Genus database with same CATH topology
2MB9A 4EWIA 4D8OA 2M5VA 4N1KA 2GF5A 2L9MA 2DO9A 2BBRA 2O71A 2MJMA 3J6JA 4LWDA 1CWWA 3YGSC 1C15A 2MS8A 2N97A 1WMGA 4N1LA 2G7RA 2NAQA 3CL3A 2BBZA 1A1ZA 3T6PA 4A2WA 4IZAB 1DDFA 3J63A 1DGNA 4JUPA 4M9ZA 1E41A 3EZQB 2IB1A 3EZQA 1Z6TA 2N00A 2XV9A 4I16A 2B1WA 1UCPA 4DWNA 2KM6A 2NZ7A 2DBFA 2F1SA 1WH4A 4O9FA 4QOBA 3LQQA 4N1JA 1FADA 2MS7A 4IZ5E 4IZ7B 2NSNA 2N7ZA 2LS7A 2DBDA 3LQRA 4O9LA 4JQWA 2N80A 4M9XA 2MPCA 2MN4A 4A2QA 3MOPK 4RHWA 1CY5A 2DBHA 2KN6A 2YQFA 4RHWE 4F42A 1N3KA 2YVIA 2YU0A 1D2ZA 2N1FA 2N83A 4UZ0A 2D96A 2VGQA 3KATA 3MOPG 3QF2A 2OF5A 1NGRA 3YGSP 2YGSA 4F44A 2P1HA 4ZBWA 4E9MA 1E3YA 1A1WA 4FH0A 4P4HI 4P4HA 4O7QA 4O6XA 2OF5H 2L6AA 1WXPA 1D2ZB 1YGOA 2LWEA 2HM2Q 3MOPA 2DBGA 4M9SA 2LWDA 1ICHA 4NQKA 1PN5A 2A5YB 2A9IA 3CRDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MB9 A;  4EWI A;  4D8O A;  2M5V A;  4N1K A;  2GF5 A;  2L9M A;  2DO9 A;  2BBR A;  2O71 A;  3J6J A;  4LWD A;  1CWW A;  3YGS C;  1C15 A;  2MS8 A;  2N97 A;  1WMG A;  4N1L A;  2G7R A;  2NAQ A;  3CL3 A;  2BBZ A;  1A1Z A;  3T6P A;  4A2W A;  4IZA B;  1DDF A;  3J63 A;  1DGN A;  4JUP A;  4M9Z A;  1E41 A;  3EZQ B;  2IB1 A;  3EZQ A;  1Z6T A;  2N00 A;  4I16 A;  2B1W A;  1UCP A;  4DWN A;  2KM6 A;  2NZ7 A;  2DBF A;  2F1S A;  1WH4 A;  4O9F A;  4QOB A;  3LQQ A;  4N1J A;  1FAD A;  2MS7 A;  4IZ5 E;  4IZ7 B;  2NSN A;  2N7Z A;  2LS7 A;  2DBD A;  3LQR A;  4O9L A;  4JQW A;  2N80 A;  4M9X A;  2MPC A;  2MN4 A;  4A2Q A;  3MOP K;  4RHW A;  1CY5 A;  2DBH A;  2KN6 A;  2YQF A;  4RHW E;  4F42 A;  1N3K A;  2YVI A;  2YU0 A;  1D2Z A;  2N1F A;  2N83 A;  4UZ0 A;  2D96 A;  2VGQ A;  3KAT A;  3MOP G;  3QF2 A;  2OF5 A;  1NGR A;  3YGS P;  2YGS A;  4F44 A;  2P1H A;  4ZBW A;  4E9M A;  1E3Y A;  1A1W A;  4FH0 A;  4P4H I;  4P4H A;  4O7Q A;  4O6X A;  2OF5 H;  2L6A A;  1WXP A;  1D2Z B;  1YGO A;  2LWE A;  2HM2 Q;  3MOP A;  2DBG A;  4M9S A;  2LWD A;  1ICH A;  4NQK A;  1PN5 A;  2A5Y B;  2A9I A;  3CRD A; 
#chains in the Genus database with same CATH topology
 2MB9 A;  4EWI A;  4D8O A;  2M5V A;  4N1K A;  2GF5 A;  2L9M A;  2DO9 A;  2BBR A;  2O71 A;  2MJM A;  3J6J A;  4LWD A;  1CWW A;  3YGS C;  1C15 A;  2MS8 A;  2N97 A;  1WMG A;  4N1L A;  2G7R A;  2NAQ A;  3CL3 A;  2BBZ A;  1A1Z A;  3T6P A;  4A2W A;  4IZA B;  1DDF A;  3J63 A;  1DGN A;  4JUP A;  4M9Z A;  1E41 A;  3EZQ B;  2IB1 A;  3EZQ A;  1Z6T A;  2N00 A;  2XV9 A;  4I16 A;  2B1W A;  1UCP A;  4DWN A;  2KM6 A;  2NZ7 A;  2DBF A;  2F1S A;  1WH4 A;  4O9F A;  4QOB A;  3LQQ A;  4N1J A;  1FAD A;  2MS7 A;  4IZ5 E;  4IZ7 B;  2NSN A;  2N7Z A;  2LS7 A;  2DBD A;  3LQR A;  4O9L A;  4JQW A;  2N80 A;  4M9X A;  2MPC A;  2MN4 A;  4A2Q A;  3MOP K;  4RHW A;  1CY5 A;  2DBH A;  2KN6 A;  2YQF A;  4RHW E;  4F42 A;  1N3K A;  2YVI A;  2YU0 A;  1D2Z A;  2N1F A;  2N83 A;  4UZ0 A;  2D96 A;  2VGQ A;  3KAT A;  3MOP G;  3QF2 A;  2OF5 A;  1NGR A;  3YGS P;  2YGS A;  4F44 A;  2P1H A;  4ZBW A;  4E9M A;  1E3Y A;  1A1W A;  4FH0 A;  4P4H I;  4P4H A;  4O7Q A;  4O6X A;  2OF5 H;  2L6A A;  1WXP A;  1D2Z B;  1YGO A;  2LWE A;  2HM2 Q;  3MOP A;  2DBG A;  4M9S A;  2LWD A;  1ICH A;  4NQK A;  1PN5 A;  2A5Y B;  2A9I A;  3CRD A; 
#chains in the Genus database with same CATH homology
 2MB9 A;  4EWI A;  4D8O A;  2M5V A;  4N1K A;  2GF5 A;  2L9M A;  2DO9 A;  2BBR A;  2O71 A;  2MJM A;  3J6J A;  4LWD A;  1CWW A;  3YGS C;  1C15 A;  2MS8 A;  2N97 A;  1WMG A;  4N1L A;  2G7R A;  2NAQ A;  3CL3 A;  2BBZ A;  1A1Z A;  3T6P A;  4A2W A;  4IZA B;  1DDF A;  3J63 A;  1DGN A;  4JUP A;  4M9Z A;  1E41 A;  3EZQ B;  2IB1 A;  3EZQ A;  1Z6T A;  2N00 A;  2XV9 A;  4I16 A;  2B1W A;  1UCP A;  4DWN A;  2KM6 A;  2NZ7 A;  2DBF A;  2F1S A;  1WH4 A;  4O9F A;  4QOB A;  3LQQ A;  4N1J A;  1FAD A;  2MS7 A;  4IZ5 E;  4IZ7 B;  2NSN A;  2N7Z A;  2LS7 A;  2DBD A;  3LQR A;  4O9L A;  4JQW A;  2N80 A;  4M9X A;  2MPC A;  2MN4 A;  4A2Q A;  3MOP K;  4RHW A;  1CY5 A;  2DBH A;  2KN6 A;  2YQF A;  4RHW E;  4F42 A;  1N3K A;  2YVI A;  2YU0 A;  1D2Z A;  2N1F A;  2N83 A;  4UZ0 A;  2D96 A;  2VGQ A;  3KAT A;  3MOP G;  3QF2 A;  2OF5 A;  1NGR A;  3YGS P;  2YGS A;  4F44 A;  2P1H A;  4ZBW A;  4E9M A;  1E3Y A;  1A1W A;  4FH0 A;  4P4H I;  4P4H A;  4O7Q A;  4O6X A;  2OF5 H;  2L6A A;  1WXP A;  1D2Z B;  1YGO A;  2LWE A;  2HM2 Q;  3MOP A;  2DBG A;  4M9S A;  2LWD A;  1ICH A;  4NQK A;  1PN5 A;  2A5Y B;  2A9I A;  3CRD A; 
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