3EZQA

Crystal structure of the fas/fadd death domain complex
Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
115
structure length
115
Chain Sequence
NLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSDSENSNFRNEIQSLVLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Apoptosis
source organism Homo sapiens
publication title The Fas-FADD death domain complex structure unravels signalling by receptor clustering
pubmed doi rcsb
molecule keywords Tumor necrosis factor receptor superfamily member 6
total genus 43
structure length 115
sequence length 115
chains with identical sequence C, E, G, I, K, M, O
ec nomenclature
pdb deposition date 2008-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 3ezqA00
4QOBA 2IB1A 1E41A 4P4HI 1D2ZA 4ZBWA 4N1LA 4UZ0A 1DDFA 1NGRA 2KM6A 1WXPA 4RHWE 4JUPA 2MB9A 4I16A 1WH4A 2DBFA 4O9LA 2DBHA 4P4HA 2B1WA 2A5YB 2M5VA 2OF5H 1D2ZB 1UCPA 2L6AA 4M9XA 3T6PA 4DWNA 2MS8A 2P1HA 2YQFA 3CL3A 2LWEA 1DGNA 1FADA 3MOPA 1ICHA 4IZ5E 4M9SA 1A1ZA 4EWIA 2DBGA 2MN4A 2LWDA 2NZ7A 3YGSC 2N97A 1N3KA 3MOPK 2YGSA 4E9MA 2G7RA 1E3YA 4N1JA 4NQKA 2D96A 3MOPG 2L9MA 3KATA 2BBRA 3YGSP 1YGOA 2MS7A 4LWDA 2GF5A 4FH0A 1PN5A 2N83A 2LS7A 2NSNA 4M9ZA 4F42A 2MPCA 1A1WA 2OF5A 4A2WA 1Z6TA 2YVIA 3LQQA 4N1KA 3LQRA 3EZQA 3QF2A 4O6XA 4IZAB 4F44A 2VGQA 2N00A 2DO9A 1WMGA 2N1FA 4O7QA 4A2QA 2A9IA 4D8OA 1CWWA 2YU0A 2NAQA 4JQWA 4RHWA 3EZQB 4IZ7B 3J6JA 3CRDA 1CY5A 3J63A 1C15A 2HM2Q 2O71A 2N80A 2F1SA 2BBZA 4O9FA 2KN6A 2N7ZA 2DBDA
chains in the Genus database with same CATH superfamily
4QOBA 2IB1A 1E41A 4P4HI 1D2ZA 4ZBWA 4N1LA 4UZ0A 1DDFA 1NGRA 2KM6A 1WXPA 4RHWE 4JUPA 2MB9A 4I16A 1WH4A 2DBFA 4O9LA 2DBHA 4P4HA 2B1WA 2A5YB 2M5VA 2OF5H 1D2ZB 1UCPA 2L6AA 4M9XA 3T6PA 4DWNA 2MS8A 2P1HA 2YQFA 3CL3A 2LWEA 1DGNA 1FADA 3MOPA 1ICHA 4IZ5E 4M9SA 1A1ZA 4EWIA 2DBGA 2MN4A 2LWDA 2NZ7A 2XV9A 3YGSC 2N97A 1N3KA 3MOPK 2YGSA 4E9MA 2G7RA 1E3YA 4N1JA 4NQKA 2D96A 3MOPG 2L9MA 3KATA 2BBRA 3YGSP 1YGOA 2MS7A 4LWDA 2GF5A 4FH0A 1PN5A 2N83A 2LS7A 2NSNA 4M9ZA 4F42A 2MPCA 1A1WA 2OF5A 4A2WA 1Z6TA 2YVIA 3LQQA 4N1KA 2MJMA 3LQRA 3EZQA 3QF2A 4O6XA 4IZAB 4F44A 2VGQA 2N00A 2DO9A 1WMGA 2N1FA 4O7QA 4A2QA 2A9IA 4D8OA 1CWWA 2YU0A 2NAQA 4JQWA 4RHWA 3EZQB 4IZ7B 3J6JA 3CRDA 1CY5A 3J63A 1C15A 2HM2Q 2O71A 2N80A 2F1SA 2BBZA 4O9FA 2KN6A 2N7ZA 2DBDA
chains in the Genus database with same CATH topology
4QOBA 2IB1A 1E41A 4P4HI 1D2ZA 4ZBWA 4N1LA 4UZ0A 1DDFA 1NGRA 2KM6A 1WXPA 4RHWE 4JUPA 2MB9A 4I16A 1WH4A 2DBFA 4O9LA 2DBHA 4P4HA 2B1WA 2A5YB 2M5VA 2OF5H 1D2ZB 1UCPA 2L6AA 4M9XA 3T6PA 4DWNA 2MS8A 2P1HA 2YQFA 3CL3A 2LWEA 1DGNA 1FADA 3MOPA 1ICHA 4IZ5E 4M9SA 1A1ZA 4EWIA 2DBGA 2MN4A 2LWDA 2NZ7A 2XV9A 3YGSC 2N97A 1N3KA 3MOPK 2YGSA 4E9MA 2G7RA 1E3YA 4N1JA 4NQKA 2D96A 3MOPG 2L9MA 3KATA 2BBRA 3YGSP 1YGOA 2MS7A 4LWDA 2GF5A 4FH0A 1PN5A 2N83A 2LS7A 2NSNA 4M9ZA 4F42A 2MPCA 1A1WA 2OF5A 4A2WA 1Z6TA 2YVIA 3LQQA 4N1KA 2MJMA 3LQRA 3EZQA 3QF2A 4O6XA 4IZAB 4F44A 2VGQA 2N00A 2DO9A 1WMGA 2N1FA 4O7QA 4A2QA 2A9IA 4D8OA 1CWWA 2YU0A 2NAQA 4JQWA 4RHWA 3EZQB 4IZ7B 3J6JA 3CRDA 1CY5A 3J63A 1C15A 2HM2Q 2O71A 2N80A 2F1SA 2BBZA 4O9FA 2KN6A 2N7ZA 2DBDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QOB A;  2IB1 A;  1E41 A;  4P4H I;  1D2Z A;  4ZBW A;  4N1L A;  4UZ0 A;  1DDF A;  1NGR A;  2KM6 A;  1WXP A;  4RHW E;  4JUP A;  2MB9 A;  4I16 A;  1WH4 A;  2DBF A;  4O9L A;  2DBH A;  4P4H A;  2B1W A;  2A5Y B;  2M5V A;  2OF5 H;  1D2Z B;  1UCP A;  2L6A A;  4M9X A;  3T6P A;  4DWN A;  2MS8 A;  2P1H A;  2YQF A;  3CL3 A;  2LWE A;  1DGN A;  1FAD A;  3MOP A;  1ICH A;  4IZ5 E;  4M9S A;  1A1Z A;  4EWI A;  2DBG A;  2MN4 A;  2LWD A;  2NZ7 A;  3YGS C;  2N97 A;  1N3K A;  3MOP K;  2YGS A;  4E9M A;  2G7R A;  1E3Y A;  4N1J A;  4NQK A;  2D96 A;  3MOP G;  2L9M A;  3KAT A;  2BBR A;  3YGS P;  1YGO A;  2MS7 A;  4LWD A;  2GF5 A;  4FH0 A;  1PN5 A;  2N83 A;  2LS7 A;  2NSN A;  4M9Z A;  4F42 A;  2MPC A;  1A1W A;  2OF5 A;  4A2W A;  1Z6T A;  2YVI A;  3LQQ A;  4N1K A;  3LQR A;  3EZQ A;  3QF2 A;  4O6X A;  4IZA B;  4F44 A;  2VGQ A;  2N00 A;  2DO9 A;  1WMG A;  2N1F A;  4O7Q A;  4A2Q A;  2A9I A;  4D8O A;  1CWW A;  2YU0 A;  2NAQ A;  4JQW A;  4RHW A;  3EZQ B;  4IZ7 B;  3J6J A;  3CRD A;  1CY5 A;  3J63 A;  1C15 A;  2HM2 Q;  2O71 A;  2N80 A;  2F1S A;  2BBZ A;  4O9F A;  2KN6 A;  2N7Z A;  2DBD A; 
#chains in the Genus database with same CATH topology
 4QOB A;  2IB1 A;  1E41 A;  4P4H I;  1D2Z A;  4ZBW A;  4N1L A;  4UZ0 A;  1DDF A;  1NGR A;  2KM6 A;  1WXP A;  4RHW E;  4JUP A;  2MB9 A;  4I16 A;  1WH4 A;  2DBF A;  4O9L A;  2DBH A;  4P4H A;  2B1W A;  2A5Y B;  2M5V A;  2OF5 H;  1D2Z B;  1UCP A;  2L6A A;  4M9X A;  3T6P A;  4DWN A;  2MS8 A;  2P1H A;  2YQF A;  3CL3 A;  2LWE A;  1DGN A;  1FAD A;  3MOP A;  1ICH A;  4IZ5 E;  4M9S A;  1A1Z A;  4EWI A;  2DBG A;  2MN4 A;  2LWD A;  2NZ7 A;  2XV9 A;  3YGS C;  2N97 A;  1N3K A;  3MOP K;  2YGS A;  4E9M A;  2G7R A;  1E3Y A;  4N1J A;  4NQK A;  2D96 A;  3MOP G;  2L9M A;  3KAT A;  2BBR A;  3YGS P;  1YGO A;  2MS7 A;  4LWD A;  2GF5 A;  4FH0 A;  1PN5 A;  2N83 A;  2LS7 A;  2NSN A;  4M9Z A;  4F42 A;  2MPC A;  1A1W A;  2OF5 A;  4A2W A;  1Z6T A;  2YVI A;  3LQQ A;  4N1K A;  2MJM A;  3LQR A;  3EZQ A;  3QF2 A;  4O6X A;  4IZA B;  4F44 A;  2VGQ A;  2N00 A;  2DO9 A;  1WMG A;  2N1F A;  4O7Q A;  4A2Q A;  2A9I A;  4D8O A;  1CWW A;  2YU0 A;  2NAQ A;  4JQW A;  4RHW A;  3EZQ B;  4IZ7 B;  3J6J A;  3CRD A;  1CY5 A;  3J63 A;  1C15 A;  2HM2 Q;  2O71 A;  2N80 A;  2F1S A;  2BBZ A;  4O9F A;  2KN6 A;  2N7Z A;  2DBD A; 
#chains in the Genus database with same CATH homology
 4QOB A;  2IB1 A;  1E41 A;  4P4H I;  1D2Z A;  4ZBW A;  4N1L A;  4UZ0 A;  1DDF A;  1NGR A;  2KM6 A;  1WXP A;  4RHW E;  4JUP A;  2MB9 A;  4I16 A;  1WH4 A;  2DBF A;  4O9L A;  2DBH A;  4P4H A;  2B1W A;  2A5Y B;  2M5V A;  2OF5 H;  1D2Z B;  1UCP A;  2L6A A;  4M9X A;  3T6P A;  4DWN A;  2MS8 A;  2P1H A;  2YQF A;  3CL3 A;  2LWE A;  1DGN A;  1FAD A;  3MOP A;  1ICH A;  4IZ5 E;  4M9S A;  1A1Z A;  4EWI A;  2DBG A;  2MN4 A;  2LWD A;  2NZ7 A;  2XV9 A;  3YGS C;  2N97 A;  1N3K A;  3MOP K;  2YGS A;  4E9M A;  2G7R A;  1E3Y A;  4N1J A;  4NQK A;  2D96 A;  3MOP G;  2L9M A;  3KAT A;  2BBR A;  3YGS P;  1YGO A;  2MS7 A;  4LWD A;  2GF5 A;  4FH0 A;  1PN5 A;  2N83 A;  2LS7 A;  2NSN A;  4M9Z A;  4F42 A;  2MPC A;  1A1W A;  2OF5 A;  4A2W A;  1Z6T A;  2YVI A;  3LQQ A;  4N1K A;  2MJM A;  3LQR A;  3EZQ A;  3QF2 A;  4O6X A;  4IZA B;  4F44 A;  2VGQ A;  2N00 A;  2DO9 A;  1WMG A;  2N1F A;  4O7Q A;  4A2Q A;  2A9I A;  4D8O A;  1CWW A;  2YU0 A;  2NAQ A;  4JQW A;  4RHW A;  3EZQ B;  4IZ7 B;  3J6J A;  3CRD A;  1CY5 A;  3J63 A;  1C15 A;  2HM2 Q;  2O71 A;  2N80 A;  2F1S A;  2BBZ A;  4O9F A;  2KN6 A;  2N7Z A;  2DBD A; 
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