3KATA

Crystal structure of the card domain of the human nlrp1 protein, northeast structural genomics consortium target hr3486e
Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
84
structure length
84
Chain Sequence
LHFVDQYREQLIARVTSVEVVLDKLHGQVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHLIMELWEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Apoptosis
source organism Homo sapiens
publication title Northeast Structural Genomics Consortium Target HR3486E
rcsb
molecule keywords NACHT, LRR and PYD domains-containing protein 1
total genus 21
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2009-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 3katA00
1N3KA 2BBZA 4P4HI 4D8OA 2G7RA 4O9LA 1D2ZA 3J63A 2DBDA 3YGSC 2KM6A 2L6AA 3LQQA 4E9MA 1E41A 2IB1A 4O7QA 3KATA 2GF5A 1NGRA 1FADA 2OF5A 2YQFA 4O6XA 3YGSP 2YU0A 2NSNA 1PN5A 2LWEA 2YVIA 2F1SA 2OF5H 4RHWA 3EZQB 2DBGA 2N1FA 1WH4A 1C15A 2B1WA 1YGOA 4JQWA 2N97A 2D96A 4A2QA 1WXPA 2BBRA 2N7ZA 3MOPK 4UZ0A 2NZ7A 2A5YB 4DWNA 4N1JA 3J6JA 2N80A 2O71A 2KN6A 2MN4A 1Z6TA 2P1HA 2N00A 1WMGA 3MOPG 4N1LA 2MS7A 4FH0A 1ICHA 1D2ZB 4IZ7B 4IZ5E 2MB9A 4F44A 2HM2Q 4NQKA 4A2WA 1A1ZA 4JUPA 1CY5A 1A1WA 4ZBWA 1CWWA 3LQRA 2N83A 1DGNA 3T6PA 3EZQA 4M9XA 1E3YA 4O9FA 4RHWE 2LS7A 3CL3A 4EWIA 4IZAB 2DBFA 2A9IA 3QF2A 2LWDA 2YGSA 4QOBA 2MS8A 4P4HA 2DO9A 3MOPA 2DBHA 4LWDA 2NAQA 3CRDA 4N1KA 1UCPA 2M5VA 2MPCA 1DDFA 4M9SA 4F42A 4I16A 4M9ZA 2L9MA 2VGQA
chains in the Genus database with same CATH superfamily
1N3KA 2BBZA 4P4HI 4D8OA 2G7RA 4O9LA 1D2ZA 3J63A 2DBDA 3YGSC 2KM6A 2L6AA 3LQQA 4E9MA 1E41A 2IB1A 4O7QA 3KATA 2GF5A 1NGRA 1FADA 2OF5A 2YQFA 4O6XA 3YGSP 2YU0A 2NSNA 1PN5A 2LWEA 2YVIA 2F1SA 2OF5H 4RHWA 3EZQB 2DBGA 2N1FA 1WH4A 1C15A 2B1WA 1YGOA 4JQWA 2N97A 2D96A 4A2QA 1WXPA 2BBRA 2N7ZA 3MOPK 4UZ0A 2NZ7A 2A5YB 4DWNA 4N1JA 3J6JA 2N80A 2O71A 2KN6A 2MN4A 1Z6TA 2P1HA 2N00A 1WMGA 3MOPG 4N1LA 2MS7A 4FH0A 1ICHA 1D2ZB 4IZ7B 4IZ5E 2MB9A 4F44A 2HM2Q 4NQKA 4A2WA 1A1ZA 4JUPA 1CY5A 1A1WA 4ZBWA 2XV9A 1CWWA 3LQRA 2N83A 1DGNA 3T6PA 3EZQA 2MJMA 4M9XA 1E3YA 4O9FA 4RHWE 2LS7A 3CL3A 4EWIA 4IZAB 2DBFA 2A9IA 3QF2A 2LWDA 2YGSA 4QOBA 2MS8A 4P4HA 2DO9A 3MOPA 2DBHA 4LWDA 2NAQA 3CRDA 4N1KA 1UCPA 2M5VA 2MPCA 1DDFA 4M9SA 4F42A 4I16A 4M9ZA 2L9MA 2VGQA
chains in the Genus database with same CATH topology
1N3KA 2BBZA 4P4HI 4D8OA 2G7RA 4O9LA 1D2ZA 3J63A 2DBDA 3YGSC 2KM6A 2L6AA 3LQQA 4E9MA 1E41A 2IB1A 4O7QA 3KATA 2GF5A 1NGRA 1FADA 2OF5A 2YQFA 4O6XA 3YGSP 2YU0A 2NSNA 1PN5A 2LWEA 2YVIA 2F1SA 2OF5H 4RHWA 3EZQB 2DBGA 2N1FA 1WH4A 1C15A 2B1WA 1YGOA 4JQWA 2N97A 2D96A 4A2QA 1WXPA 2BBRA 2N7ZA 3MOPK 4UZ0A 2NZ7A 2A5YB 4DWNA 4N1JA 3J6JA 2N80A 2O71A 2KN6A 2MN4A 1Z6TA 2P1HA 2N00A 1WMGA 3MOPG 4N1LA 2MS7A 4FH0A 1ICHA 1D2ZB 4IZ7B 4IZ5E 2MB9A 4F44A 2HM2Q 4NQKA 4A2WA 1A1ZA 4JUPA 1CY5A 1A1WA 4ZBWA 2XV9A 1CWWA 3LQRA 2N83A 1DGNA 3T6PA 3EZQA 2MJMA 4M9XA 1E3YA 4O9FA 4RHWE 2LS7A 3CL3A 4EWIA 4IZAB 2DBFA 2A9IA 3QF2A 2LWDA 2YGSA 4QOBA 2MS8A 4P4HA 2DO9A 3MOPA 2DBHA 4LWDA 2NAQA 3CRDA 4N1KA 1UCPA 2M5VA 2MPCA 1DDFA 4M9SA 4F42A 4I16A 4M9ZA 2L9MA 2VGQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N3K A;  2BBZ A;  4P4H I;  4D8O A;  2G7R A;  4O9L A;  1D2Z A;  3J63 A;  2DBD A;  3YGS C;  2KM6 A;  2L6A A;  3LQQ A;  4E9M A;  1E41 A;  2IB1 A;  4O7Q A;  3KAT A;  2GF5 A;  1NGR A;  1FAD A;  2OF5 A;  2YQF A;  4O6X A;  3YGS P;  2YU0 A;  2NSN A;  1PN5 A;  2LWE A;  2YVI A;  2F1S A;  2OF5 H;  4RHW A;  3EZQ B;  2DBG A;  2N1F A;  1WH4 A;  1C15 A;  2B1W A;  1YGO A;  4JQW A;  2N97 A;  2D96 A;  4A2Q A;  1WXP A;  2BBR A;  2N7Z A;  3MOP K;  4UZ0 A;  2NZ7 A;  2A5Y B;  4DWN A;  4N1J A;  3J6J A;  2N80 A;  2O71 A;  2KN6 A;  2MN4 A;  1Z6T A;  2P1H A;  2N00 A;  1WMG A;  3MOP G;  4N1L A;  2MS7 A;  4FH0 A;  1ICH A;  1D2Z B;  4IZ7 B;  4IZ5 E;  2MB9 A;  4F44 A;  2HM2 Q;  4NQK A;  4A2W A;  1A1Z A;  4JUP A;  1CY5 A;  1A1W A;  4ZBW A;  1CWW A;  3LQR A;  2N83 A;  1DGN A;  3T6P A;  3EZQ A;  4M9X A;  1E3Y A;  4O9F A;  4RHW E;  2LS7 A;  3CL3 A;  4EWI A;  4IZA B;  2DBF A;  2A9I A;  3QF2 A;  2LWD A;  2YGS A;  4QOB A;  2MS8 A;  4P4H A;  2DO9 A;  3MOP A;  2DBH A;  4LWD A;  2NAQ A;  3CRD A;  4N1K A;  1UCP A;  2M5V A;  2MPC A;  1DDF A;  4M9S A;  4F42 A;  4I16 A;  4M9Z A;  2L9M A;  2VGQ A; 
#chains in the Genus database with same CATH topology
 1N3K A;  2BBZ A;  4P4H I;  4D8O A;  2G7R A;  4O9L A;  1D2Z A;  3J63 A;  2DBD A;  3YGS C;  2KM6 A;  2L6A A;  3LQQ A;  4E9M A;  1E41 A;  2IB1 A;  4O7Q A;  3KAT A;  2GF5 A;  1NGR A;  1FAD A;  2OF5 A;  2YQF A;  4O6X A;  3YGS P;  2YU0 A;  2NSN A;  1PN5 A;  2LWE A;  2YVI A;  2F1S A;  2OF5 H;  4RHW A;  3EZQ B;  2DBG A;  2N1F A;  1WH4 A;  1C15 A;  2B1W A;  1YGO A;  4JQW A;  2N97 A;  2D96 A;  4A2Q A;  1WXP A;  2BBR A;  2N7Z A;  3MOP K;  4UZ0 A;  2NZ7 A;  2A5Y B;  4DWN A;  4N1J A;  3J6J A;  2N80 A;  2O71 A;  2KN6 A;  2MN4 A;  1Z6T A;  2P1H A;  2N00 A;  1WMG A;  3MOP G;  4N1L A;  2MS7 A;  4FH0 A;  1ICH A;  1D2Z B;  4IZ7 B;  4IZ5 E;  2MB9 A;  4F44 A;  2HM2 Q;  4NQK A;  4A2W A;  1A1Z A;  4JUP A;  1CY5 A;  1A1W A;  4ZBW A;  2XV9 A;  1CWW A;  3LQR A;  2N83 A;  1DGN A;  3T6P A;  3EZQ A;  2MJM A;  4M9X A;  1E3Y A;  4O9F A;  4RHW E;  2LS7 A;  3CL3 A;  4EWI A;  4IZA B;  2DBF A;  2A9I A;  3QF2 A;  2LWD A;  2YGS A;  4QOB A;  2MS8 A;  4P4H A;  2DO9 A;  3MOP A;  2DBH A;  4LWD A;  2NAQ A;  3CRD A;  4N1K A;  1UCP A;  2M5V A;  2MPC A;  1DDF A;  4M9S A;  4F42 A;  4I16 A;  4M9Z A;  2L9M A;  2VGQ A; 
#chains in the Genus database with same CATH homology
 1N3K A;  2BBZ A;  4P4H I;  4D8O A;  2G7R A;  4O9L A;  1D2Z A;  3J63 A;  2DBD A;  3YGS C;  2KM6 A;  2L6A A;  3LQQ A;  4E9M A;  1E41 A;  2IB1 A;  4O7Q A;  3KAT A;  2GF5 A;  1NGR A;  1FAD A;  2OF5 A;  2YQF A;  4O6X A;  3YGS P;  2YU0 A;  2NSN A;  1PN5 A;  2LWE A;  2YVI A;  2F1S A;  2OF5 H;  4RHW A;  3EZQ B;  2DBG A;  2N1F A;  1WH4 A;  1C15 A;  2B1W A;  1YGO A;  4JQW A;  2N97 A;  2D96 A;  4A2Q A;  1WXP A;  2BBR A;  2N7Z A;  3MOP K;  4UZ0 A;  2NZ7 A;  2A5Y B;  4DWN A;  4N1J A;  3J6J A;  2N80 A;  2O71 A;  2KN6 A;  2MN4 A;  1Z6T A;  2P1H A;  2N00 A;  1WMG A;  3MOP G;  4N1L A;  2MS7 A;  4FH0 A;  1ICH A;  1D2Z B;  4IZ7 B;  4IZ5 E;  2MB9 A;  4F44 A;  2HM2 Q;  4NQK A;  4A2W A;  1A1Z A;  4JUP A;  1CY5 A;  1A1W A;  4ZBW A;  2XV9 A;  1CWW A;  3LQR A;  2N83 A;  1DGN A;  3T6P A;  3EZQ A;  2MJM A;  4M9X A;  1E3Y A;  4O9F A;  4RHW E;  2LS7 A;  3CL3 A;  4EWI A;  4IZA B;  2DBF A;  2A9I A;  3QF2 A;  2LWD A;  2YGS A;  4QOB A;  2MS8 A;  4P4H A;  2DO9 A;  3MOP A;  2DBH A;  4LWD A;  2NAQ A;  3CRD A;  4N1K A;  1UCP A;  2M5V A;  2MPC A;  1DDF A;  4M9S A;  4F42 A;  4I16 A;  4M9Z A;  2L9M A;  2VGQ A; 
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